Rorug05G0134000
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006807
Physical Location & Seq
Reverse (-)
11963356 .. 11964140
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0134000.1

Sequence Viewer

Length: 618 bp
ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGCGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCATGGTGAGGACATCTTGGGCATCATGAAGACTACTTCCGAGAGAGGTAGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACAGAGATGCAGACATGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

205

Amino Acids

22.62

Weight (kDa)

5.65

Isoelectric Point (pI)

55.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 8.4e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 546, 555
AclWI GGATC 6 cut(s) 118, 131, 141, 333, 346, 381
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 473
AhlI ACTAGT 2 cut(s) 314, 365
AjnI CCWGG 3 cut(s) 92, 322, 462
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 3 cut(s) 7, 199, 580
AluI AGCT 3 cut(s) 7, 199, 580
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 6 cut(s) 118, 131, 141, 333, 346, 381
Ama87I CYCGRG 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 50, 293
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AseI ATTAAT 1 cut(s) 393
Asp700I GAANNNNTTC 2 cut(s) 316, 477
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 360
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 452, 512
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 306
BamHI GGATCC 2 cut(s) 123, 338
BanII GRGCYC 2 cut(s) 262, 582
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 2 cut(s) 26, 374
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 3 cut(s) 94, 324, 464
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 365
BfaI CTAG 2 cut(s) 315, 366
BfmI CTRYAG 2 cut(s) 168, 595
BfoI RGCGCY 1 cut(s) 163
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 51, 294
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 2 cut(s) 52, 295
Bme1390I CCNGG 4 cut(s) 55, 94, 324, 464
Bme18I GGWCC 1 cut(s) 360
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 360
BmiI GGNNCC 6 cut(s) 102, 125, 245, 340, 361, 409
BmrFI CCNGG 4 cut(s) 55, 94, 324, 464
BmsI GCATC 2 cut(s) 525, 592
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 3 cut(s) 93, 179, 444
Bpu1102I GCTNAGC 1 cut(s) 581
BpuEI CTTGAG 3 cut(s) 113, 282, 596
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 2 cut(s) 205, 427
BseBI CCWGG 3 cut(s) 94, 324, 464
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 2 cut(s) 37, 434
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 1 cut(s) 595
BseNI ACTGG 2 cut(s) 205, 427
BseRI GAGGAG 2 cut(s) 465, 468
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 2 cut(s) 62, 280
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 262, 306, 582
Bsp143I GATC 7 cut(s) 112, 123, 133, 186, 338, 386, 457
Bsp1720I GCTNAGC 1 cut(s) 581
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 546, 555
BspCNI CTCAG 1 cut(s) 594
BspHI TCATGA 1 cut(s) 519
BspLI GGNNCC 6 cut(s) 102, 125, 245, 340, 361, 409
BspPI GGATC 6 cut(s) 118, 131, 141, 333, 346, 381
BsrI ACTGG 2 cut(s) 205, 427
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 7 cut(s) 112, 123, 133, 186, 338, 386, 457
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 94, 324, 464
Bst6I CTCTTC 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 581, 615
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 37, 434
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 7 cut(s) 115, 126, 136, 189, 341, 389, 460
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 7 cut(s) 112, 123, 133, 186, 338, 386, 457
BstMWI GCNNNNNNNGC 2 cut(s) 552, 611
BstNI CCWGG 3 cut(s) 94, 324, 464
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 53, 92, 322, 462
BstSFI CTRYAG 2 cut(s) 168, 595
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 62, 280
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 5 cut(s) 123, 133, 186, 338, 386
BstYI RGATCY 5 cut(s) 123, 133, 186, 338, 386
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 37, 434
CciI TCATGA 1 cut(s) 519
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 360
Csp6I GTAC 1 cut(s) 327
CviAII CATG 6 cut(s) 215, 307, 493, 497, 520, 610
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 2 cut(s) 581, 615
DpnI GATC 7 cut(s) 114, 125, 135, 188, 340, 388, 459
DpnII GATC 7 cut(s) 112, 123, 133, 186, 338, 386, 457
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 582
Eco47I GGWCC 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 580
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 580
EcoRII CCWGG 3 cut(s) 92, 322, 462
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 498
EcoT38I GRGCYC 2 cut(s) 262, 582
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 6 cut(s) 218, 310, 496, 500, 523, 613
FaiI YATR 9 cut(s) 177, 210, 216, 308, 494, 498, 521, 552, 611
FatI CATG 6 cut(s) 214, 306, 492, 496, 519, 609
Fnu4HI GCNGC 2 cut(s) 51, 294
FokI GGATG 2 cut(s) 44, 421
FriOI GRGCYC 2 cut(s) 262, 582
Fsp4HI GCNGC 2 cut(s) 51, 294
FspBI CTAG 2 cut(s) 315, 366
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 51, 294
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 3 cut(s) 93, 179, 444
HaeII RGCGCY 1 cut(s) 163
HapII CCGG 1 cut(s) 54
HhaI GCGC 1 cut(s) 162
Hin1II CATG 6 cut(s) 218, 310, 496, 500, 523, 613
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 1 cut(s) 416
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 452, 512
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 1 cut(s) 535
Hpy188III TCNNGA 5 cut(s) 110, 182, 247, 263, 520
Hpy8I GTNNAC 1 cut(s) 363
HpyAV CCTTC 1 cut(s) 488
HpyCH4V TGCA 4 cut(s) 285, 442, 496, 605
HpyF10VI GCNNNNNNNGC 2 cut(s) 552, 611
HpyF3I CTNAG 2 cut(s) 581, 615
Hsp92II CATG 6 cut(s) 218, 310, 496, 500, 523, 613
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 7 cut(s) 112, 123, 133, 186, 338, 386, 457
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 62, 280
LweI GCATC 2 cut(s) 525, 592
MaeI CTAG 2 cut(s) 315, 366
MalI GATC 7 cut(s) 114, 125, 135, 188, 340, 388, 459
MboI GATC 7 cut(s) 112, 123, 133, 186, 338, 386, 457
MboII GAAGA 2 cut(s) 289, 535
MflI RGATCY 5 cut(s) 123, 133, 186, 338, 386
MhlI GDGCHC 3 cut(s) 262, 306, 582
MluCI AATT 1 cut(s) 352
Mph1103I ATGCAT 1 cut(s) 498
MroXI GAANNNNTTC 2 cut(s) 316, 477
MseI TTAA 2 cut(s) 156, 393
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 4 cut(s) 55, 94, 324, 464
MvaI CCWGG 3 cut(s) 94, 324, 464
MwoI GCNNNNNNNGC 2 cut(s) 552, 611
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 306
NdeII GATC 7 cut(s) 112, 123, 133, 186, 338, 386, 457
NlaIII CATG 6 cut(s) 218, 310, 496, 500, 523, 613
NlaIV GGNNCC 6 cut(s) 102, 125, 245, 340, 361, 409
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PagI TCATGA 1 cut(s) 519
PciI ACATGT 1 cut(s) 214
PdmI GAANNNNTTC 2 cut(s) 316, 477
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 2 cut(s) 52, 295
PscI ACATGT 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 582
Psp6I CCWGG 3 cut(s) 92, 322, 462
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 3 cut(s) 92, 322, 462
PspN4I GGNNCC 6 cut(s) 102, 125, 245, 340, 361, 409
PspPI GGNCC 1 cut(s) 360
PsuI RGATCY 5 cut(s) 123, 133, 186, 338, 386
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 156, 393
SatI GCNGC 2 cut(s) 51, 294
Sau3AI GATC 7 cut(s) 112, 123, 133, 186, 338, 386, 457
Sau96I GGNCC 1 cut(s) 360
ScrFI CCNGG 4 cut(s) 55, 94, 324, 464
SduI GDGCHC 3 cut(s) 262, 306, 582
SetI ASST 6 cut(s) 9, 98, 201, 284, 544, 582
SfaNI GCATC 2 cut(s) 525, 592
SfcI CTRYAG 2 cut(s) 168, 595
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 360
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 4 cut(s) 128, 261, 297, 575
SmoI CTYRAG 4 cut(s) 128, 261, 297, 575
SpeI ACTAGT 2 cut(s) 314, 365
Sse9I AATT 1 cut(s) 352
SsiI CCGC 2 cut(s) 546, 555
SspMI CTAG 2 cut(s) 315, 366
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 4 cut(s) 53, 92, 322, 462
StyI CCWWGG 1 cut(s) 306
TaqI TCGA 2 cut(s) 27, 262
TasI AATT 1 cut(s) 352
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 2 cut(s) 156, 393
Tru9I TTAA 2 cut(s) 156, 393
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 2 cut(s) 290, 536
VpaK11BI GGWCC 1 cut(s) 360
VspI ATTAAT 1 cut(s) 393
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 477
XspI CTAG 2 cut(s) 315, 366
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.