MD11G1252200.v1.1
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0006807
Physical Location & Seq
Reverse (-)
36451411 .. 36454278
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1252200.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGGTGGGCTCAGGAGCAACAGATAGGAGCAAAGAGGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAACCGTCTGTCTCAACACTGACTGGACTTACTCTGTCTTCTGGACTATCCGTCCCCGCCCGAGAGTTAGAGGTGGTAATGGTTGCAAGGTTGGGGATGACAATGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGTCGAGCGAGAGTTTCATCAGATTGTCTGGAAGAAATTGATGGAGAAGATCCTGTCAGAAAGGCCTTCAGCAAAATGTCCATTCAGCTGTATAATTACGGAGAAGGGTTGATGGGGAAGGTGGCATCTGATAAGTGCCACAAATGGGTCTTCAAAGAACCCACAGAGTGTGAACCAAACATCTCCAACTACTGGCAAAGTTCATTTGATGCTCTTCCTCCTGAATGGACTGATCAGTTTGAGTCAGGCATTCAGACAATTGCTGTAATTCAAGCTGGTCACGGGCTTCTGCAGTTGGGCTCCTGCAAGATTATTCCTGAAGACCTGCATTTTGTGCTAAGAATGAGGCATACATTTGAATCTCTAGGCTACCAATCTGGTTTCTACCTCTCCCAACTCTTTTCATCAAACCGAAACAACTCTGGATCATCGGTGCTGCCCTCAAAGCAGTCCCCAATGCCAATCCGCCCTTCTCCACCTCTCTTCAATTGGGCTCAAAGGCCTCTTCCATCTGCAGCAACCATGCAGCTTCCTTCACCCAATTTCCAAAACTCTGCTGCTAGACTAGGGTACAATCCTCAAGCTGGTAAAGACGAGACACACATGTTTTTGCTGCCTCATTCGGCCGAAACACAAATGGGAGGAGACATGATGAGAGGCGGAGGAGGAGGAGGAGGAGAGCATGAAGGTGACATCAAATGGCCTAATGGATTGTCCTTCTTCAATGCACTCACGGGGCGGTCTGATGATGCAAAGCTTTTGTTCAATCCGGAGAGCTTGGCAAACAAAGGCGGGGACGAAAATCATCACCACAACAACCCGAATGCAAATTCAGACCACAATGAGTTTTTGAGCTTGGACTGCCATCCGGATAGTAGCATAAGGAAGCACATGGAAAACAAGTACAAGAGGAGCTTTACTTTGCCTGCAAGGATGGCTTCGTCGTCTTCGAATTCGGTTGATCACCATCAGCACCAACCTGTCGGGTATCGAAACGCAGAAGCTGGTATGTACTCAGATGTCATGGAGACATTCTTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

417

Amino Acids

46.21

Weight (kDa)

5.94

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 19 - 188 1.6e-25 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 540
AccB7I CCANNNNNTGG 1 cut(s) 399
AccIII TCCGGA 2 cut(s) 976, 1075
AciI CCGC 5 cut(s) 127, 673, 867, 946, 999
AclWI GGATC 2 cut(s) 251, 640
AcoI YGGCCR 1 cut(s) 831
AcsI RAATTY 2 cut(s) 1036, 1159
AcuI CTGAAG 2 cut(s) 259, 546
AdeI CACNNNGTG 1 cut(s) 375
AfaI GTAC 3 cut(s) 779, 1112, 1220
AfiI CCNNNNNNNGG 4 cut(s) 61, 352, 399, 791
AflIII ACRYGT 1 cut(s) 810
AgsI TTSAA 6 cut(s) 361, 479, 566, 694, 931, 973
AhdI GACNNNNNGTC 1 cut(s) 120
AjuI GAANNNNNNNTTGG 2 cut(s) 661, 693
Alw26I GTCTC 4 cut(s) 86, 797, 846, 1229
AlwI GGATC 2 cut(s) 251, 640
AlwNI CAGNNNCTG 1 cut(s) 1211
Ama87I CYCGRG 1 cut(s) 130
Aor13HI TCCGGA 2 cut(s) 976, 1075
AoxI GGCC 6 cut(s) 51, 63, 270, 707, 831, 908
ApeKI GCWGC 6 cut(s) 177, 643, 722, 733, 764, 820
ApoI RAATTY 2 cut(s) 1036, 1159
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AspS9I GGNCC 2 cut(s) 52, 64
AsuHPI GGTGA 4 cut(s) 735, 908, 1007, 1163
AsuII TTCGAA 1 cut(s) 1157
AvaI CYCGRG 1 cut(s) 130
BanII GRGCYC 3 cut(s) 11, 509, 703
BbsI GAAGAC 4 cut(s) 100, 349, 534, 1146
BbvI GCAGC 6 cut(s) 189, 630, 734, 745, 751, 807
BccI CCATC 8 cut(s) 43, 194, 242, 313, 724, 1080, 1135, 1182
BclI TGATCA 2 cut(s) 439, 1168
BcoDI GTCTC 4 cut(s) 86, 797, 846, 1229
BfaI CTAG 3 cut(s) 572, 768, 773
BfmI CTRYAG 2 cut(s) 497, 720
BfuAI ACCTGC 1 cut(s) 540
BisI GCNGC 6 cut(s) 178, 644, 723, 734, 765, 821
BlsI GCNGC 6 cut(s) 179, 645, 724, 735, 766, 822
BmeRI GACNNNNNGTC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 52, 64
BmiI GGNNCC 1 cut(s) 508
BmsI GCATC 3 cut(s) 341, 406, 946
BpiI GAAGAC 4 cut(s) 100, 349, 534, 1146
Bpu10I CCTNAGC 1 cut(s) 10
Bpu14I TTCGAA 1 cut(s) 1157
BpuEI CTTGAG 1 cut(s) 771
BsaBI GATNNNNATC 1 cut(s) 1173
BsaWI WCCGGW 2 cut(s) 976, 1075
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 352, 399, 791
Bse1I ACTGG 2 cut(s) 98, 404
Bse8I GATNNNNATC 1 cut(s) 1173
BseAI TCCGGA 2 cut(s) 976, 1075
BseGI GGATG 4 cut(s) 51, 172, 1072, 1146
BseJI GATNNNNATC 1 cut(s) 1173
BseLI CCNNNNNNNGG 4 cut(s) 61, 352, 399, 791
BseMII CTCAG 3 cut(s) 24, 82, 1236
BseNI ACTGG 2 cut(s) 98, 404
BseRI GAGGAG 7 cut(s) 864, 885, 888, 891, 894, 897, 1132
BseX3I CGGCCG 1 cut(s) 831
BseXI GCAGC 6 cut(s) 189, 630, 734, 745, 751, 807
Bsh1285I CGRYCG 1 cut(s) 834
BshFI GGCC 6 cut(s) 53, 65, 272, 709, 833, 910
BsiEI CGRYCG 1 cut(s) 834
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 2 cut(s) 977, 1076
BslFI GGGAC 3 cut(s) 108, 643, 1016
BslI CCNNNNNNNGG 4 cut(s) 61, 352, 399, 791
BsmAI GTCTC 4 cut(s) 86, 797, 846, 1229
BsmFI GGGAC 3 cut(s) 108, 643, 1016
BsmI GAATGC 2 cut(s) 456, 1036
BsnI GGCC 6 cut(s) 53, 65, 272, 709, 833, 910
BsoBI CYCGRG 1 cut(s) 130
Bsp119I TTCGAA 1 cut(s) 1157
Bsp1286I GDGCHC 3 cut(s) 11, 509, 703
Bsp13I TCCGGA 2 cut(s) 976, 1075
Bsp143I GATC 4 cut(s) 256, 439, 632, 1168
BspACI CCGC 5 cut(s) 127, 673, 867, 946, 999
BspANI GGCC 6 cut(s) 53, 65, 272, 709, 833, 910
BspCNI CTCAG 3 cut(s) 23, 81, 1235
BspEI TCCGGA 2 cut(s) 976, 1075
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 508
BspMAI CTGCAG 2 cut(s) 501, 724
BspMI ACCTGC 1 cut(s) 540
BspPI GGATC 2 cut(s) 251, 640
BspQI GCTCTTC 1 cut(s) 426
BspT104I TTCGAA 1 cut(s) 1157
BsrI ACTGG 2 cut(s) 98, 404
BssMI GATC 4 cut(s) 256, 439, 632, 1168
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 3 cut(s) 426, 695, 717
BstAPI GCANNNNNTGC 1 cut(s) 541
BstBI TTCGAA 1 cut(s) 1157
BstC8I GCNNGC 1 cut(s) 1134
BstDEI CTNAG 4 cut(s) 10, 68, 545, 1222
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 4 cut(s) 51, 172, 1072, 1146
BstKTI GATC 4 cut(s) 259, 442, 635, 1171
BstMAI GTCTC 4 cut(s) 86, 797, 846, 1229
BstMBI GATC 4 cut(s) 256, 439, 632, 1168
BstMCI CGRYCG 1 cut(s) 834
BstMWI GCNNNNNNNGC 4 cut(s) 541, 652, 1068, 1142
BstNSI RCATGY 1 cut(s) 814
BstSFI CTRYAG 2 cut(s) 497, 720
BstV1I GCAGC 6 cut(s) 189, 630, 734, 745, 751, 807
BstV2I GAAGAC 4 cut(s) 100, 349, 534, 1146
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BstZI CGGCCG 1 cut(s) 831
BsuRI GGCC 6 cut(s) 53, 65, 272, 709, 833, 910
BtsCI GGATG 4 cut(s) 51, 172, 1072, 1146
BtsIMutI CAGTG 1 cut(s) 87
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 1 cut(s) 1134
CaiI CAGNNNCTG 1 cut(s) 1211
CciI TCATGA 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 52, 64
Csp6I GTAC 3 cut(s) 778, 1111, 1219
CviAII CATG 7 cut(s) 59, 730, 811, 856, 890, 1099, 1231
CviQI GTAC 3 cut(s) 778, 1111, 1219
DdeI CTNAG 4 cut(s) 10, 68, 545, 1222
DpnI GATC 4 cut(s) 258, 441, 634, 1170
DpnII GATC 4 cut(s) 256, 439, 632, 1168
DraIII CACNNNGTG 1 cut(s) 375
DriI GACNNNNNGTC 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 831
EagI CGGCCG 1 cut(s) 831
Eam1104I CTCTTC 3 cut(s) 426, 695, 717
Eam1105I GACNNNNNGTC 1 cut(s) 120
EarI CTCTTC 3 cut(s) 426, 695, 717
EciI GGCGGA 2 cut(s) 662, 882
EclXI CGGCCG 1 cut(s) 831
Eco147I AGGCCT 2 cut(s) 272, 709
Eco24I GRGCYC 3 cut(s) 11, 509, 703
Eco52I CGGCCG 1 cut(s) 831
Eco57I CTGAAG 2 cut(s) 259, 546
Eco88I CYCGRG 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 1159
EcoT38I GRGCYC 3 cut(s) 11, 509, 703
FaeI CATG 7 cut(s) 62, 733, 814, 859, 893, 1102, 1234
FalI AAGNNNNNCTT 4 cut(s) 1106, 1138, 1129, 1161
FaqI GGGAC 3 cut(s) 108, 643, 1016
FatI CATG 7 cut(s) 58, 729, 810, 855, 889, 1098, 1230
FauI CCCGC 2 cut(s) 134, 992
FbaI TGATCA 2 cut(s) 439, 1168
Fnu4HI GCNGC 6 cut(s) 178, 644, 723, 734, 765, 821
FokI GGATG 4 cut(s) 58, 179, 1059, 1153
FriOI GRGCYC 3 cut(s) 11, 509, 703
Fsp4HI GCNGC 6 cut(s) 178, 644, 723, 734, 765, 821
FspBI CTAG 3 cut(s) 572, 768, 773
GluI GCNGC 6 cut(s) 178, 644, 723, 734, 765, 821
HaeIII GGCC 6 cut(s) 53, 65, 272, 709, 833, 910
HapII CCGG 2 cut(s) 977, 1076
Hin1II CATG 7 cut(s) 62, 733, 814, 859, 893, 1102, 1234
HindIII AAGCTT 1 cut(s) 962
HinfI GANTC 2 cut(s) 449, 566
HpaII CCGG 2 cut(s) 977, 1076
HphI GGTGA 4 cut(s) 735, 908, 1007, 1163
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 8 cut(s) 71, 229, 266, 337, 462, 952, 1042, 1225
Hpy188III TCNNGA 9 cut(s) 12, 59, 112, 236, 428, 524, 630, 977, 1076
Hpy8I GTNNAC 1 cut(s) 380
Hpy99I CGWCG 1 cut(s) 1153
HpyAV CCTTC 8 cut(s) 65, 283, 305, 319, 687, 750, 887, 934
HpyCH4III ACNGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 4 cut(s) 541, 652, 1068, 1142
HpyF3I CTNAG 4 cut(s) 10, 68, 545, 1222
Hsp92II CATG 7 cut(s) 62, 733, 814, 859, 893, 1102, 1234
Kpn2I TCCGGA 2 cut(s) 976, 1075
Ksp22I TGATCA 2 cut(s) 439, 1168
Kzo9I GATC 4 cut(s) 256, 439, 632, 1168
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 4 cut(s) 14, 27, 512, 1119
Lsp1109I GCAGC 6 cut(s) 189, 630, 734, 745, 751, 807
LweI GCATC 3 cut(s) 341, 406, 946
MaeI CTAG 3 cut(s) 572, 768, 773
MaeIII GTNAC 2 cut(s) 485, 896
MalI GATC 4 cut(s) 258, 441, 634, 1170
MboI GATC 4 cut(s) 256, 439, 632, 1168
MfeI CAATTG 2 cut(s) 465, 694
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 3 cut(s) 11, 509, 703
MluCI AATT 8 cut(s) 243, 301, 465, 474, 694, 748, 1036, 1159
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 1 cut(s) 417
MroI TCCGGA 2 cut(s) 976, 1075
MslI CAYNNNNRTG 1 cut(s) 894
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 2 cut(s) 977, 1076
MunI CAATTG 2 cut(s) 465, 694
Mva1269I GAATGC 2 cut(s) 456, 1036
MwoI GCNNNNNNNGC 4 cut(s) 541, 652, 1068, 1142
NdeII GATC 4 cut(s) 256, 439, 632, 1168
NlaIII CATG 7 cut(s) 62, 733, 814, 859, 893, 1102, 1234
NlaIV GGNNCC 1 cut(s) 508
NmuCI GTSAC 2 cut(s) 485, 896
NspI RCATGY 1 cut(s) 814
NspV TTCGAA 1 cut(s) 1157
PagI TCATGA 1 cut(s) 58
PceI AGGCCT 2 cut(s) 272, 709
PciI ACATGT 1 cut(s) 810
PciSI GCTCTTC 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 1154
PctI GAATGC 2 cut(s) 456, 1036
PfeI GAWTC 1 cut(s) 566
PflMI CCANNNNNTGG 1 cut(s) 399
PkrI GCNGC 6 cut(s) 179, 645, 724, 735, 766, 822
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PscI ACATGT 1 cut(s) 810
PspN4I GGNNCC 1 cut(s) 508
PspPI GGNCC 2 cut(s) 52, 64
PstI CTGCAG 2 cut(s) 501, 724
PstNI CAGNNNCTG 1 cut(s) 1211
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 295
RsaI GTAC 3 cut(s) 779, 1112, 1220
RsaNI GTAC 3 cut(s) 778, 1111, 1219
RseI CAYNNNNRTG 1 cut(s) 894
SapI GCTCTTC 1 cut(s) 426
SatI GCNGC 6 cut(s) 178, 644, 723, 734, 765, 821
Sau3AI GATC 4 cut(s) 256, 439, 632, 1168
Sau96I GGNCC 2 cut(s) 52, 64
SchI GAGTC 1 cut(s) 458
SduI GDGCHC 3 cut(s) 11, 509, 703
SfaNI GCATC 3 cut(s) 341, 406, 946
SfcI CTRYAG 2 cut(s) 497, 720
SfuI TTCGAA 1 cut(s) 1157
SmiMI CAYNNNNRTG 1 cut(s) 894
SmlI CTYRAG 1 cut(s) 786
SmoI CTYRAG 1 cut(s) 786
Sse9I AATT 8 cut(s) 243, 301, 465, 474, 694, 748, 1036, 1159
SseBI AGGCCT 2 cut(s) 272, 709
SsiI CCGC 5 cut(s) 127, 673, 867, 946, 999
SspMI CTAG 3 cut(s) 572, 768, 773
StuI AGGCCT 2 cut(s) 272, 709
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 3 cut(s) 211, 1157, 1198
TasI AATT 8 cut(s) 243, 301, 465, 474, 694, 748, 1036, 1159
TatI WGTACW 2 cut(s) 1110, 1218
TfiI GAWTC 1 cut(s) 566
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 2 cut(s) 485, 896
TseI GCWGC 6 cut(s) 177, 643, 722, 733, 764, 820
Tsp45I GTSAC 2 cut(s) 485, 896
TspDTI ATGAA 5 cut(s) 47, 213, 399, 600, 906
TspGWI ACGGA 2 cut(s) 110, 321
TspRI CASTG 1 cut(s) 94
Van91I CCANNNNNTGG 1 cut(s) 399
XagI CCTNNNNNAGG 1 cut(s) 59
XapI RAATTY 2 cut(s) 1036, 1159
XceI RCATGY 1 cut(s) 814
XspI CTAG 3 cut(s) 572, 768, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.