Rh5DG232500
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006807
Physical Location & Seq
Forward (+)
26522288 .. 26525314
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG232500.1

Sequence Viewer

Length: 1071 bp
ATGTTGATGTGGGAAGATGGGTTTTGCCGAGGAAGAGTTGCAGATTGTCTTCCAGACATTGATGGAGAAGATCCTGTCAGAAAATCCTTCAGCAAAATGTCCATTCAACTATATAATTATGGAGAAGGGTTGATGGGGAAGGTTGCATCTGATAAGTGCCACAAATGGGTGTTCAAAGAACCAACAGAGTGTGAACCAAACATCTCCAACTACTGGCAAAGTTCATTCGATGCTCTTCCTCCTGAATGGACTGATCAGTTCGAGTCAGGAATACAGACAATTGCTGTAATTCAAGCTGGCCATGGACTTCTGCAATTGGGTTCCTGCAAAATTATACCTGAAGACCTTCATTTTGTGCTAAGAATGAGGCACACCTTTGAATCTCTAGGCTACCAATCTGGTTTCTACCTATCTCAGCTTTTTGCTTCAAACAGAAACAATTCAAATTCCTCTGTTCCAGTACTTCCTTCGAAGCAATCCCCCATTCCAATTCGACCTCCTCCTCCTTTGTTCAATTGGGCTCAAAGGCCACTCCCACCTGCAACATCCATGCAGCTGCCTTCACCCAATTTTCAAAACTCCGCTGCAGCCAGACTAGGGTATCCTCACCAACCCAACAAAGACGAAAGTACCCATATGTTTTTGCTGCCTCATTCGGCCGAAACCCAAATGGGAGATCACCACATGATGGGAGGAGGAGAACAGCATGAAAATGACATCAAGTGGCCAAATGGGCTGTCTTTCTTCAGTGCCCTCACTGGACGAAGTGAGGATGCAAAGCTTTTGTTCAACCCGGAGAACTTAGGAAACAAAGCAGCAGAGGAAGATCCAAATTCAGATGCTTCCAACAATCCCAATCACGAGTTCTTGAGCTTGGATTGCCATCCGGATAGTAGTAATGCAAGGAAGATGAACATGGAAAATAAGTACAAGAGGAGCTTCACTTTGCCTGCAAGAATGACCTCATCATCTTCAACTTCAGTTGATCATCACCACCAGCACCAGAACGTGTACAATCGGAATTCTGAAGCCGGTATGTACTCTGATGTCATGGAGACCTTCTTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

356

Amino Acids

40.11

Weight (kDa)

5.63

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 24 - 126 5e-17 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 547
Acc36I ACCTGC 1 cut(s) 547
AccB7I CCANNNNNTGG 2 cut(s) 213, 688
AccIII TCCGGA 1 cut(s) 886
AciI CCGC 1 cut(s) 582
AclWI GGATC 2 cut(s) 65, 821
AcoI YGGCCR 3 cut(s) 298, 657, 725
AcsI RAATTY 3 cut(s) 445, 832, 1021
AcuI CTGAAG 5 cut(s) 73, 360, 730, 963, 1047
AfaI GTAC 5 cut(s) 462, 631, 929, 1013, 1040
AfiI CCNNNNNNNGG 4 cut(s) 166, 213, 597, 688
AflIII ACRYGT 1 cut(s) 1008
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
AluBI AGCT 6 cut(s) 296, 418, 556, 781, 873, 939
AluI AGCT 6 cut(s) 296, 418, 556, 781, 873, 939
Alw26I GTCTC 1 cut(s) 1049
AlwI GGATC 2 cut(s) 65, 821
Aor13HI TCCGGA 1 cut(s) 886
AoxI GGCC 4 cut(s) 298, 527, 657, 725
ApeKI GCWGC 6 cut(s) 553, 556, 584, 587, 646, 815
ApoI RAATTY 3 cut(s) 445, 832, 1021
ArsI GACNNNNNNTTYG 4 cut(s) 335, 367, 722, 754
Asp700I GAANNNNTTC 2 cut(s) 345, 439
AsuC2I CCSGG 1 cut(s) 794
AsuHPI GGTGA 4 cut(s) 555, 599, 671, 983
AsuII TTCGAA 1 cut(s) 470
BaeGI GKGCMC 1 cut(s) 754
BaeI ACNNNNGTAYC 4 cut(s) 584, 613, 617, 646
BalI TGGCCA 2 cut(s) 300, 727
BanII GRGCYC 1 cut(s) 523
BauI CACGAG 1 cut(s) 860
BbsI GAAGAC 2 cut(s) 41, 348
BbvI GCAGC 6 cut(s) 543, 565, 571, 599, 633, 827
BccI CCATC 5 cut(s) 11, 56, 127, 682, 891
BciVI GTATCC 1 cut(s) 612
BclI TGATCA 2 cut(s) 253, 985
BcnI CCSGG 1 cut(s) 794
BcoDI GTCTC 1 cut(s) 1049
BfaI CTAG 2 cut(s) 386, 596
BfmI CTRYAG 1 cut(s) 585
BfuAI ACCTGC 1 cut(s) 547
BfuI GTATCC 1 cut(s) 612
BglI GCCNNNNNGGC 1 cut(s) 733
BisI GCNGC 6 cut(s) 554, 557, 585, 588, 647, 816
BlsI GCNGC 6 cut(s) 555, 558, 586, 589, 648, 817
BmcAI AGTACT 1 cut(s) 462
Bme1390I CCNGG 1 cut(s) 794
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 794
BmsI GCATC 4 cut(s) 155, 220, 763, 829
BpiI GAAGAC 2 cut(s) 41, 348
Bpu14I TTCGAA 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 889
BpuMI CCSGG 1 cut(s) 794
BsaBI GATNNNNATC 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 1049
BsaJI CCNNGG 2 cut(s) 28, 301
BsaWI WCCGGW 1 cut(s) 886
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 213, 597, 688
Bse118I RCCGGY 1 cut(s) 1031
Bse1I ACTGG 3 cut(s) 218, 458, 763
Bse8I GATNNNNATC 1 cut(s) 882
BseAI TCCGGA 1 cut(s) 886
BseDI CCNNGG 2 cut(s) 28, 301
BseGI GGATG 3 cut(s) 545, 778, 883
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 4 cut(s) 166, 213, 597, 688
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 3 cut(s) 218, 458, 763
BseRI GAGGAG 5 cut(s) 489, 492, 708, 711, 949
BseSI GKGCMC 1 cut(s) 754
BseX3I CGGCCG 1 cut(s) 657
BseXI GCAGC 6 cut(s) 543, 565, 571, 599, 633, 827
Bsh1285I CGRYCG 1 cut(s) 660
BshFI GGCC 4 cut(s) 300, 529, 659, 727
BsiEI CGRYCG 1 cut(s) 660
BsiSI CCGG 3 cut(s) 794, 887, 1032
BslI CCNNNNNNNGG 4 cut(s) 166, 213, 597, 688
BsmAI GTCTC 1 cut(s) 1049
BsnI GGCC 4 cut(s) 300, 529, 659, 727
Bso31I GGTCTC 1 cut(s) 1049
Bsp119I TTCGAA 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 523, 754
Bsp13I TCCGGA 1 cut(s) 886
Bsp1407I TGTACA 1 cut(s) 1011
Bsp143I GATC 5 cut(s) 70, 253, 676, 826, 985
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 1 cut(s) 582
BspANI GGCC 4 cut(s) 300, 529, 659, 727
BspCNI CTCAG 1 cut(s) 427
BspEI TCCGGA 1 cut(s) 886
BspLI GGNNCC 1 cut(s) 322
BspMAI CTGCAG 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 2 cut(s) 65, 821
BspQI GCTCTTC 1 cut(s) 240
BspT104I TTCGAA 1 cut(s) 470
BspTNI GGTCTC 1 cut(s) 1049
BsrFI RCCGGY 1 cut(s) 1031
BsrGI TGTACA 1 cut(s) 1011
BsrI ACTGG 3 cut(s) 218, 458, 763
BssAI RCCGGY 1 cut(s) 1031
BssECI CCNNGG 2 cut(s) 28, 301
BssMI GATC 5 cut(s) 70, 253, 676, 826, 985
BssSI CACGAG 1 cut(s) 860
BssT1I CCWWGG 1 cut(s) 301
Bst2BI CACGAG 1 cut(s) 860
Bst6I CTCTTC 2 cut(s) 28, 240
BstAUI TGTACA 1 cut(s) 1011
BstBI TTCGAA 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 298, 951
BstDEI CTNAG 4 cut(s) 359, 414, 802, 1063
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 3 cut(s) 545, 778, 883
BstKTI GATC 5 cut(s) 73, 256, 679, 829, 988
BstMAI GTCTC 1 cut(s) 1049
BstMBI GATC 5 cut(s) 70, 253, 676, 826, 985
BstMCI CGRYCG 1 cut(s) 660
BstMWI GCNNNNNNNGC 2 cut(s) 733, 879
BstSCI CCNGG 1 cut(s) 792
BstSFI CTRYAG 1 cut(s) 585
BstSLI GKGCMC 1 cut(s) 754
BstV1I GCAGC 6 cut(s) 543, 565, 571, 599, 633, 827
BstV2I GAAGAC 2 cut(s) 41, 348
BstX2I RGATCY 2 cut(s) 70, 826
BstYI RGATCY 2 cut(s) 70, 826
BstZI CGGCCG 1 cut(s) 657
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 4 cut(s) 300, 529, 659, 727
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 3 cut(s) 545, 778, 883
BtsIMutI CAGTG 2 cut(s) 754, 756
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 2 cut(s) 298, 951
Cfr10I RCCGGY 1 cut(s) 1031
Csp6I GTAC 5 cut(s) 461, 630, 928, 1012, 1039
CviAII CATG 6 cut(s) 302, 550, 685, 707, 916, 1051
CviQI GTAC 5 cut(s) 461, 630, 928, 1012, 1039
DdeI CTNAG 4 cut(s) 359, 414, 802, 1063
DpnI GATC 5 cut(s) 72, 255, 678, 828, 987
DpnII GATC 5 cut(s) 70, 253, 676, 826, 985
EaeI YGGCCR 3 cut(s) 298, 657, 725
EagI CGGCCG 1 cut(s) 657
Eam1104I CTCTTC 2 cut(s) 28, 240
EarI CTCTTC 2 cut(s) 28, 240
EclXI CGGCCG 1 cut(s) 657
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 523
Eco31I GGTCTC 1 cut(s) 1049
Eco52I CGGCCG 1 cut(s) 657
Eco57I CTGAAG 5 cut(s) 73, 360, 730, 963, 1047
EcoRI GAATTC 1 cut(s) 1021
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 6 cut(s) 305, 553, 688, 710, 919, 1054
FalI AAGNNNNNCTT 2 cut(s) 923, 955
FatI CATG 6 cut(s) 301, 549, 684, 706, 915, 1050
FauNDI CATATG 1 cut(s) 636
FbaI TGATCA 2 cut(s) 253, 985
Fnu4HI GCNGC 6 cut(s) 554, 557, 585, 588, 647, 816
FokI GGATG 3 cut(s) 532, 785, 870
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 6 cut(s) 554, 557, 585, 588, 647, 816
FspBI CTAG 2 cut(s) 386, 596
GluI GCNGC 6 cut(s) 554, 557, 585, 588, 647, 816
HaeIII GGCC 4 cut(s) 300, 529, 659, 727
HapII CCGG 3 cut(s) 794, 887, 1032
Hin1II CATG 6 cut(s) 305, 553, 688, 710, 919, 1054
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 2 cut(s) 263, 380
HpaII CCGG 3 cut(s) 794, 887, 1032
HphI GGTGA 4 cut(s) 555, 599, 671, 983
Hpy166II GTNNAC 2 cut(s) 194, 1012
Hpy188I TCNGA 6 cut(s) 80, 151, 838, 1020, 1027, 1045
Hpy188III TCNNGA 6 cut(s) 53, 242, 267, 860, 868, 887
Hpy8I GTNNAC 2 cut(s) 194, 1012
HpyAV CCTTC 7 cut(s) 97, 119, 133, 356, 477, 570, 1069
HpyCH4IV ACGT 1 cut(s) 1008
HpyF10VI GCNNNNNNNGC 2 cut(s) 733, 879
HpyF3I CTNAG 4 cut(s) 359, 414, 802, 1063
HpySE526I ACGT 1 cut(s) 1008
Hsp92II CATG 6 cut(s) 305, 553, 688, 710, 919, 1054
Kpn2I TCCGGA 1 cut(s) 886
Ksp22I TGATCA 2 cut(s) 253, 985
Kzo9I GATC 5 cut(s) 70, 253, 676, 826, 985
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 936
Lsp1109I GCAGC 6 cut(s) 543, 565, 571, 599, 633, 827
LweI GCATC 4 cut(s) 155, 220, 763, 829
MaeI CTAG 2 cut(s) 386, 596
MaeII ACGT 1 cut(s) 1008
MalI GATC 5 cut(s) 72, 255, 678, 828, 987
MboI GATC 5 cut(s) 70, 253, 676, 826, 985
MfeI CAATTG 3 cut(s) 279, 314, 514
MflI RGATCY 2 cut(s) 70, 826
MhlI GDGCHC 2 cut(s) 523, 754
MlsI TGGCCA 2 cut(s) 300, 727
MluNI TGGCCA 2 cut(s) 300, 727
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 231, 870
Mox20I TGGCCA 2 cut(s) 300, 727
MroI TCCGGA 1 cut(s) 886
MroXI GAANNNNTTC 2 cut(s) 345, 439
MscI TGGCCA 2 cut(s) 300, 727
MslI CAYNNNNRTG 1 cut(s) 711
Msp20I TGGCCA 2 cut(s) 300, 727
MspA1I CMGCKG 2 cut(s) 556, 584
MspI CCGG 3 cut(s) 794, 887, 1032
MspR9I CCNGG 1 cut(s) 794
MunI CAATTG 3 cut(s) 279, 314, 514
MwoI GCNNNNNNNGC 2 cut(s) 733, 879
NciI CCSGG 1 cut(s) 794
NcoI CCATGG 1 cut(s) 301
NdeI CATATG 1 cut(s) 636
NdeII GATC 5 cut(s) 70, 253, 676, 826, 985
NlaIII CATG 6 cut(s) 305, 553, 688, 710, 919, 1054
NlaIV GGNNCC 1 cut(s) 322
NmeAIII GCCGAG 1 cut(s) 53
NspV TTCGAA 1 cut(s) 470
PaqCI CACCTGC 1 cut(s) 547
PciSI GCTCTTC 1 cut(s) 240
PdmI GAANNNNTTC 2 cut(s) 345, 439
PfeI GAWTC 1 cut(s) 380
PflMI CCANNNNNTGG 2 cut(s) 213, 688
PkrI GCNGC 6 cut(s) 555, 558, 586, 589, 648, 817
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 322
PstI CTGCAG 1 cut(s) 589
PsuI RGATCY 2 cut(s) 70, 826
PvuII CAGCTG 1 cut(s) 556
RsaI GTAC 5 cut(s) 462, 631, 929, 1013, 1040
RsaNI GTAC 5 cut(s) 461, 630, 928, 1012, 1039
RseI CAYNNNNRTG 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 240
SatI GCNGC 6 cut(s) 554, 557, 585, 588, 647, 816
Sau3AI GATC 5 cut(s) 70, 253, 676, 826, 985
ScaI AGTACT 1 cut(s) 462
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 794
SduI GDGCHC 2 cut(s) 523, 754
SfaNI GCATC 4 cut(s) 155, 220, 763, 829
SfcI CTRYAG 1 cut(s) 585
SfuI TTCGAA 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 868
SmoI CTYRAG 1 cut(s) 868
SsiI CCGC 1 cut(s) 582
SspMI CTAG 2 cut(s) 386, 596
StyD4I CCNGG 1 cut(s) 792
StyI CCWWGG 1 cut(s) 301
TaiI ACGT 1 cut(s) 1011
TaqI TCGA 4 cut(s) 228, 261, 470, 493
TatI WGTACW 4 cut(s) 460, 927, 1011, 1038
TfiI GAWTC 1 cut(s) 380
TscAI CASTG 2 cut(s) 754, 763
TseI GCWGC 6 cut(s) 553, 556, 584, 587, 646, 815
TspDTI ATGAA 4 cut(s) 213, 338, 723, 926
TspRI CASTG 2 cut(s) 754, 763
Van91I CCANNNNNTGG 2 cut(s) 213, 688
XapI RAATTY 3 cut(s) 445, 832, 1021
XmnI GAANNNNTTC 2 cut(s) 345, 439
XspI CTAG 2 cut(s) 386, 596
ZrmI AGTACT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.