Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006807

Physical Location & Seq

Genomic Coordinates Forward (+)

10496113 .. 10498917

Gene Structure 2805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G176900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGTGGGCTCAGGAGCAACAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGCGTCTGTCTCAGCACAGACTGGACTTACTCTGTCTTCTGGACCATCCGTCCACGCCCGAGAGTCAGAGGAGGTAATGGCTGCAAGGTTGGGGATGACAATGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGTCGAGGAAGAGTTTCATCAGATTGTCTTGAAGATATTGACGGAGAAGATCCTGTCAGGAAAGCCTTCAGCAAAATGTCCATTCAGCTGTATAATTATGGAGAAGGGTTGATGGGGAAGGTTGCATCTGATAAGTGCCACAAATGGGTTTTCAAAGAACCTACAGAGTGTGAACCAAACATCTCCAACTACTGGCAAAGTTCTTTTGATGCTCTTCCTCCTGAATGGACTGATCAGTTTGAGTCAGGCATTCAGACAATTGCTGTAATTCAAGCTGGTCATGGGCTTCTGCAGTTGGGCTCCTGCAAGATTATACCAGAAGACCTTCACTTTGTGCTAAGAATGAGGCATACCTTTGAGTCTTTAGGCTACCAATCTGGTTTTTACCTCTCCCAACTATTTTCCTCTACCAGAAACAACTCTGCCTCATCAGTGCTTCCTTCAAAGCAGTCCCCAATTCCGATCCGGCCTCCGCCTCCTCACTTCAATTGGGCTCAAGGGCCTCTTCCATCTGCAACAGCTATGCAGCTGCCATCCCCCAACAGTTTCCAGAACTCTGCAGCCAGACTTGGATACAATCCACAAGCCAATAAAGACGGGACACACATGTTTTTGCTGCCTCATTCAGCAGAAACACAAATGGGAGGAGACATGATGGGAGGGGGAGGAGGAGAGCATGAAAATGACATCAAATGGCCAAATGGATTGTCTTTCTTCAATGCCCTCACGGGACGTTCTGATGATGCAAAGCTTTTGTTCAATCCGGAGAACTTGGGAAACAAAGGTGGAGACGAAAATCACCACCACAACCCGAATCCAAACTCAGATCATGCTTCGAATCACAATGAGTTTTTGAGCTTGGATTGCCACCCGGACAGTAGTGCAAGGAAGAACATGGAAAACAAGTACAAGAGGAGCTTTACTTTGCCTGCAAGAATGGCTTCATCATCTTCAAACTCAGTTGATCACCATCAGCACCAATCTGTGGGGTATCGAAACGCCGAAGCTGGTATGTACTCTGATGTTATGGAGACCTTCTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

418

Amino Acids

46.18

Weight (kDa)

5.89

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53900 AT5G53900 AT5G53900
fragaria_vesca	FvH4_3g19620 FvH4_3g19620 FvH4_3g19620
malus_domestica	MD03G1230900.v1.1 MD11G1252200.v1.1
prunus_persica	Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.2G207300_v2.0.a1 Prupe.4G176900_v2.0.a1
pyrus_communis	pycom03g17860 pycom11g22370
rosa_chinensis	RchiOBHm_Chr5g0032811
rosa_laevigata	RLG00000033430
rosa_multiflora	Rmu_sc0000986.1_g000046
rosa_roxburghii	Rroxscaffold_1G00047240
rosa_rugosa	Rorug05G0134000 Rorug05G0134100
rosa_samantha	Rh5AG226600 Rh5BG227700 Rh5CG255600 Rh5DG232500
rosa_wichuraiana	Rw5G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	399, 1192
AccIII	TCCGGA	1 cut(s)	970
AciI	CCGC	1 cut(s)	680
AclWI	GGATC	2 cut(s)	251, 664
AcoI	YGGCCR	1 cut(s)	902
AcuI	CTGAAG	1 cut(s)	259
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	2 cut(s)	1115, 1223
AfiI	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 1192
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	8 cut(s)	239, 361, 479, 651, 694, 925, 967, 1161
AhdI	GACNNNNNGTC	1 cut(s)	120
Alw26I	GTCTC	4 cut(s)	86, 849, 990, 1232
AlwI	GGATC	2 cut(s)	251, 664
Ama87I	CYCGRG	1 cut(s)	130
Aor13HI	TCCGGA	1 cut(s)	970
AoxI	GGCC	5 cut(s)	51, 63, 674, 707, 902
ApeKI	GCWGC	6 cut(s)	153, 177, 733, 736, 767, 823
ArsI	GACNNNNNNTTYG	4 cut(s)	521, 553, 899, 931
Asp700I	GAANNNNTTC	4 cut(s)	220, 272, 531, 1147
AspS9I	GGNCC	4 cut(s)	52, 64, 114, 707
AsuC2I	CCSGG	1 cut(s)	1079
AsuHPI	GGTGA	2 cut(s)	998, 1166
AsuII	TTCGAA	1 cut(s)	1043
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	904
BanII	GRGCYC	3 cut(s)	11, 509, 703
BbsI	GAAGAC	2 cut(s)	100, 534
BbvI	GCAGC	6 cut(s)	140, 189, 723, 745, 779, 810
BccI	CCATC	8 cut(s)	43, 125, 194, 313, 724, 748, 856, 1185
BciVI	GTATCC	1 cut(s)	773
BclI	TGATCA	2 cut(s)	439, 1171
BcnI	CCSGG	1 cut(s)	1079
BcoDI	GTCTC	4 cut(s)	86, 849, 990, 1232
BfmI	CTRYAG	3 cut(s)	369, 497, 765
BfuI	GTATCC	1 cut(s)	773
BisI	GCNGC	6 cut(s)	154, 178, 734, 737, 768, 824
BlsI	GCNGC	6 cut(s)	155, 179, 735, 738, 769, 825
Bme1390I	CCNGG	1 cut(s)	1079
Bme18I	GGWCC	1 cut(s)	114
BmeRI	GACNNNNNGTC	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	4 cut(s)	52, 64, 114, 707
BmiI	GGNNCC	1 cut(s)	508
BmrFI	CCNGG	1 cut(s)	1079
BmsI	GCATC	3 cut(s)	341, 406, 940
BpiI	GAAGAC	2 cut(s)	100, 534
Bpu10I	CCTNAGC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	1043
BpuEI	CTTGAG	1 cut(s)	687
BpuMI	CCSGG	1 cut(s)	1079
BsaBI	GATNNNNATC	1 cut(s)	1176
BsaI	GGTCTC	1 cut(s)	1232
BsaWI	WCCGGW	1 cut(s)	970
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 1192
Bse1I	ACTGG	2 cut(s)	98, 404
Bse8I	GATNNNNATC	1 cut(s)	1176
BseAI	TCCGGA	1 cut(s)	970
BseGI	GGATG	4 cut(s)	51, 117, 172, 740
BseJI	GATNNNNATC	1 cut(s)	1176
BseLI	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 1192
BseMII	CTCAG	5 cut(s)	24, 82, 97, 1044, 1179
BseNI	ACTGG	2 cut(s)	98, 404
BseRI	GAGGAG	6 cut(s)	156, 675, 867, 888, 891, 1135
BseXI	GCAGC	6 cut(s)	140, 189, 723, 745, 779, 810
BshFI	GGCC	5 cut(s)	53, 65, 676, 709, 904
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	3 cut(s)	673, 971, 1079
BslFI	GGGAC	3 cut(s)	643, 820, 951
BslI	CCNNNNNNNGG	4 cut(s)	61, 352, 399, 1192
BsmAI	GTCTC	4 cut(s)	86, 849, 990, 1232
BsmBI	CGTCTC	1 cut(s)	990
BsmFI	GGGAC	3 cut(s)	643, 820, 951
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	5 cut(s)	53, 65, 676, 709, 904
Bso31I	GGTCTC	1 cut(s)	1232
BsoBI	CYCGRG	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	1043
Bsp1286I	GDGCHC	3 cut(s)	11, 509, 703
Bsp13I	TCCGGA	1 cut(s)	970
Bsp143I	GATC	5 cut(s)	256, 439, 669, 1033, 1171
BspACI	CCGC	1 cut(s)	680
BspANI	GGCC	5 cut(s)	53, 65, 676, 709, 904
BspCNI	CTCAG	5 cut(s)	23, 81, 96, 1043, 1178
BspEI	TCCGGA	1 cut(s)	970
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	508
BspMAI	CTGCAG	2 cut(s)	501, 769
BspPI	GGATC	2 cut(s)	251, 664
BspQI	GCTCTTC	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	1043
BspTNI	GGTCTC	1 cut(s)	1232
BsrI	ACTGG	2 cut(s)	98, 404
BssMI	GATC	5 cut(s)	256, 439, 669, 1033, 1171
Bst4CI	ACNGT	2 cut(s)	752, 1085
Bst6I	CTCTTC	3 cut(s)	211, 426, 717
BstBI	TTCGAA	1 cut(s)	1043
BstC8I	GCNNGC	1 cut(s)	1137
BstDEI	CTNAG	6 cut(s)	10, 68, 83, 545, 1030, 1165
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	4 cut(s)	51, 117, 172, 740
BstKTI	GATC	5 cut(s)	259, 442, 672, 1036, 1174
BstMAI	GTCTC	4 cut(s)	86, 849, 990, 1232
BstMBI	GATC	5 cut(s)	256, 439, 669, 1033, 1171
BstMWI	GCNNNNNNNGC	2 cut(s)	1071, 1145
BstNSI	RCATGY	1 cut(s)	817
BstSCI	CCNGG	1 cut(s)	1077
BstSFI	CTRYAG	3 cut(s)	369, 497, 765
BstV1I	GCAGC	6 cut(s)	140, 189, 723, 745, 779, 810
BstV2I	GAAGAC	2 cut(s)	100, 534
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	5 cut(s)	53, 65, 676, 709, 904
BtsCI	GGATG	4 cut(s)	51, 117, 172, 740
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	1 cut(s)	1137
CciI	TCATGA	1 cut(s)	58
Cfr13I	GGNCC	4 cut(s)	52, 64, 114, 707
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	1114, 1222
CviAII	CATG	7 cut(s)	59, 488, 814, 859, 884, 1037, 1102
CviQI	GTAC	2 cut(s)	1114, 1222
DdeI	CTNAG	6 cut(s)	10, 68, 83, 545, 1030, 1165
DpnI	GATC	5 cut(s)	258, 441, 671, 1035, 1173
DpnII	GATC	5 cut(s)	256, 439, 669, 1033, 1171
DraIII	CACNNNGTG	1 cut(s)	541
DriI	GACNNNNNGTC	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	902
Eam1104I	CTCTTC	3 cut(s)	211, 426, 717
Eam1105I	GACNNNNNGTC	1 cut(s)	120
EarI	CTCTTC	3 cut(s)	211, 426, 717
EciI	GGCGGA	1 cut(s)	669
Eco24I	GRGCYC	3 cut(s)	11, 509, 703
Eco31I	GGTCTC	1 cut(s)	1232
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	2 cut(s)	64, 707
EcoT38I	GRGCYC	3 cut(s)	11, 509, 703
Esp3I	CGTCTC	1 cut(s)	990
FaeI	CATG	7 cut(s)	62, 491, 817, 862, 887, 1040, 1105
FalI	AAGNNNNNCTT	6 cut(s)	696, 728, 1109, 1141, 1132, 1164
FaqI	GGGAC	3 cut(s)	643, 820, 951
FatI	CATG	7 cut(s)	58, 487, 813, 858, 883, 1036, 1101
FbaI	TGATCA	2 cut(s)	439, 1171
Fnu4HI	GCNGC	6 cut(s)	154, 178, 734, 737, 768, 824
FokI	GGATG	4 cut(s)	58, 104, 179, 727
FriOI	GRGCYC	3 cut(s)	11, 509, 703
Fsp4HI	GCNGC	6 cut(s)	154, 178, 734, 737, 768, 824
GluI	GCNGC	6 cut(s)	154, 178, 734, 737, 768, 824
HaeIII	GGCC	5 cut(s)	53, 65, 676, 709, 904
HapII	CCGG	3 cut(s)	673, 971, 1079
HgaI	GACGC	1 cut(s)	64
Hin1II	CATG	7 cut(s)	62, 491, 817, 862, 887, 1040, 1105
HindIII	AAGCTT	1 cut(s)	956
HinfI	GANTC	5 cut(s)	135, 449, 566, 1021, 1045
HpaII	CCGG	3 cut(s)	673, 971, 1079
HphI	GGTGA	2 cut(s)	998, 1166
Hpy166II	GTNNAC	2 cut(s)	125, 380
Hpy188I	TCNGA	9 cut(s)	71, 140, 229, 337, 462, 669, 946, 1033, 1228
Hpy188III	TCNNGA	8 cut(s)	12, 59, 112, 236, 265, 428, 757, 971
Hpy8I	GTNNAC	2 cut(s)	125, 380
HpyAV	CCTTC	7 cut(s)	65, 283, 305, 319, 542, 657, 1252
HpyCH4III	ACNGT	2 cut(s)	752, 1085
HpyCH4IV	ACGT	1 cut(s)	940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1071, 1145
HpyF3I	CTNAG	6 cut(s)	10, 68, 83, 545, 1030, 1165
HpySE526I	ACGT	1 cut(s)	940
Hsp92II	CATG	7 cut(s)	62, 491, 817, 862, 887, 1040, 1105
Kpn2I	TCCGGA	1 cut(s)	970
Ksp22I	TGATCA	2 cut(s)	439, 1171
Kzo9I	GATC	5 cut(s)	256, 439, 669, 1033, 1171
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	4 cut(s)	14, 27, 512, 1122
Lsp1109I	GCAGC	6 cut(s)	140, 189, 723, 745, 779, 810
LweI	GCATC	3 cut(s)	341, 406, 940
MaeII	ACGT	1 cut(s)	940
MalI	GATC	5 cut(s)	258, 441, 671, 1035, 1173
MboI	GATC	5 cut(s)	256, 439, 669, 1033, 1171
MfeI	CAATTG	2 cut(s)	465, 694
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	3 cut(s)	11, 509, 703
MlsI	TGGCCA	1 cut(s)	904
MluCI	AATT	5 cut(s)	301, 465, 474, 663, 694
MluNI	TGGCCA	1 cut(s)	904
MlyI	GAGTC	3 cut(s)	144, 458, 575
MmeI	TCCRAC	1 cut(s)	417
Mox20I	TGGCCA	1 cut(s)	904
MroI	TCCGGA	1 cut(s)	970
MroXI	GAANNNNTTC	4 cut(s)	220, 272, 531, 1147
MscI	TGGCCA	1 cut(s)	904
MslI	CAYNNNNRTG	1 cut(s)	888
Msp20I	TGGCCA	1 cut(s)	904
MspA1I	CMGCKG	2 cut(s)	295, 736
MspI	CCGG	3 cut(s)	673, 971, 1079
MspR9I	CCNGG	1 cut(s)	1079
MunI	CAATTG	2 cut(s)	465, 694
Mva1269I	GAATGC	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	1071, 1145
NciI	CCSGG	1 cut(s)	1079
NdeII	GATC	5 cut(s)	256, 439, 669, 1033, 1171
NlaIII	CATG	7 cut(s)	62, 491, 817, 862, 887, 1040, 1105
NlaIV	GGNNCC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	817
NspV	TTCGAA	1 cut(s)	1043
PagI	TCATGA	1 cut(s)	58
PciI	ACATGT	1 cut(s)	813
PciSI	GCTCTTC	1 cut(s)	426
PctI	GAATGC	1 cut(s)	456
PdmI	GAANNNNTTC	4 cut(s)	220, 272, 531, 1147
PfeI	GAWTC	2 cut(s)	1021, 1045
PflMI	CCANNNNNTGG	2 cut(s)	399, 1192
PkrI	GCNGC	6 cut(s)	155, 179, 735, 738, 769, 825
PleI	GAGTC	3 cut(s)	143, 457, 574
PpsI	GAGTC	3 cut(s)	143, 457, 574
PscI	ACATGT	1 cut(s)	813
PspN4I	GGNNCC	1 cut(s)	508
PspPI	GGNCC	4 cut(s)	52, 64, 114, 707
PstI	CTGCAG	2 cut(s)	501, 769
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	2 cut(s)	295, 736
RsaI	GTAC	2 cut(s)	1115, 1223
RsaNI	GTAC	2 cut(s)	1114, 1222
RseI	CAYNNNNRTG	1 cut(s)	888
SapI	GCTCTTC	1 cut(s)	426
SatI	GCNGC	6 cut(s)	154, 178, 734, 737, 768, 824
Sau3AI	GATC	5 cut(s)	256, 439, 669, 1033, 1171
Sau96I	GGNCC	4 cut(s)	52, 64, 114, 707
SchI	GAGTC	3 cut(s)	144, 458, 575
ScrFI	CCNGG	1 cut(s)	1079
SduI	GDGCHC	3 cut(s)	11, 509, 703
SfaNI	GCATC	3 cut(s)	341, 406, 940
SfcI	CTRYAG	3 cut(s)	369, 497, 765
SfuI	TTCGAA	1 cut(s)	1043
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
Sse9I	AATT	5 cut(s)	301, 465, 474, 663, 694
SsiI	CCGC	1 cut(s)	680
StyD4I	CCNGG	1 cut(s)	1077
TaaI	ACNGT	2 cut(s)	752, 1085
TaiI	ACGT	1 cut(s)	943
TaqI	TCGA	3 cut(s)	211, 1043, 1201
TasI	AATT	5 cut(s)	301, 465, 474, 663, 694
TatI	WGTACW	2 cut(s)	1113, 1221
TfiI	GAWTC	2 cut(s)	1021, 1045
TscAI	CASTG	1 cut(s)	645
TseI	GCWGC	6 cut(s)	153, 177, 733, 736, 767, 823
TspDTI	ATGAA	4 cut(s)	47, 213, 900, 1140
TspGWI	ACGGA	2 cut(s)	110, 264
TspRI	CASTG	1 cut(s)	645
Van91I	CCANNNNNTGG	2 cut(s)	399, 1192
VpaK11BI	GGWCC	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	59
XceI	RCATGY	1 cut(s)	817
XmnI	GAANNNNTTC	4 cut(s)	220, 272, 531, 1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.