Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Reverse (-)

22583972 .. 22586405

Gene Structure 2434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGATGTCCCGTTACCAGTCGAGAAATTATCTTATGGATCAAACACTGAGGACAAAACTTGTGTAGTGCTTGTGGCAACTGGGAGTTTCAATCCTCCTACTTTCATGCATTTACGCATGTTTGAGCTGGCGAGAGATGAATTACGCTCAAAAGGATTTCATGTTCTTGGAGGATATATGTCTCCTGTTAATGATGCATATAAGAAGAAGGGCCTTTTATCTGCAGAACATCGTTTAGAGATGTGTAATGTATCATGTCAAAGCTCTGACTTTGTAATGGTTGATCCGTGGGAGGCATCTCAAAGCAACTACCAACGAACTTTGACGGTTTTATCAAGGGTCAAGACTTTCTTAACAACAAATCGACATGTACCCGAGGAATCTCTCAAAGTCATGCTACTATGTGGCTCGGATTTACTGCTATCTTTCTGCACTCCCGGTGTTTGGATCCCTGAACAGTTAAGAACTATTTGCAAAGATTATGGCATTGTGTGCATCCGTAGAGAAGGACAAGATGTTGAAAATATGATCTCTGGTGACGAAATCTTAAACGAAAACTGTGCTAACGTCAAAATCGTTGACAATACTGTTCCTAATCAAATCAGTTCGAGTAGATTAAGGCAATGCATTTCGCGAGGGTTATCGGTTAAATACTTGACTGAAGATGGAGTAATAGATTATATCAGACAACATCAACTATACACTGAGCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

238

Amino Acids

26.92

Weight (kDa)

5.77

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	26 - 234	1.9e-06	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	634
AclWI	GGATC	4 cut(s)	46, 278, 442, 455
AcuI	CTGAAG	1 cut(s)	681
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	91, 521
AloI	GAACNNNNNNTCC	2 cut(s)	147, 179
AluBI	AGCT	3 cut(s)	127, 264, 709
AluI	AGCT	3 cut(s)	127, 264, 709
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	4 cut(s)	46, 278, 442, 455
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	374
BamHI	GGATCC	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	711
BccI	CCATC	1 cut(s)	659
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	438
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	3 cut(s)	184, 305, 504
BmuI	ACTGGG	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	287, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	2 cut(s)	17, 85
Bse3DI	GCAATG	1 cut(s)	629
BseDI	CCNNGG	2 cut(s)	287, 375
BseGI	GGATG	2 cut(s)	10, 495
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	629
BseMII	CTCAG	2 cut(s)	39, 696
BseNI	ACTGG	2 cut(s)	17, 85
BsgI	GTGCAG	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	634
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	711
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	438
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	4 cut(s)	38, 283, 447, 528
Bsp68I	TCGCGA	1 cut(s)	634
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	40, 697
BspFNI	CGCG	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	449
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	4 cut(s)	46, 278, 442, 455
BsrDI	GCAATG	1 cut(s)	629
BsrI	ACTGG	2 cut(s)	17, 85
BssECI	CCNNGG	2 cut(s)	287, 375
BssMI	GATC	4 cut(s)	38, 283, 447, 528
Bst4CI	ACNGT	4 cut(s)	328, 459, 560, 589
BstAPI	GCANNNNNTGC	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	48, 705
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	10, 495
BstFNI	CGCG	1 cut(s)	634
BstKTI	GATC	4 cut(s)	41, 286, 450, 531
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	4 cut(s)	38, 283, 447, 528
BstMWI	GCNNNNNNNGC	1 cut(s)	492
BstNSI	RCATGY	2 cut(s)	121, 371
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	222
BstUI	CGCG	1 cut(s)	634
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	10, 495
BtsIMutI	CAGTG	2 cut(s)	45, 702
BtuMI	TCGCGA	1 cut(s)	634
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	7 cut(s)	106, 118, 161, 255, 368, 394, 714
CviJI	RGCY	5 cut(s)	127, 213, 264, 408, 709
CviKI_1	RGCY	5 cut(s)	127, 213, 264, 408, 709
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	2 cut(s)	48, 705
DpnI	GATC	4 cut(s)	40, 285, 449, 530
DpnII	GATC	4 cut(s)	38, 283, 447, 528
Ecl136II	GAGCTC	1 cut(s)	709
Eco24I	GRGCYC	1 cut(s)	711
Eco53kI	GAGCTC	1 cut(s)	709
Eco57I	CTGAAG	1 cut(s)	681
Eco88I	CYCGRG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	709
EcoO109I	RGGNCCY	1 cut(s)	211
EcoT22I	ATGCAT	3 cut(s)	111, 199, 629
EcoT38I	GRGCYC	1 cut(s)	711
FaeI	CATG	7 cut(s)	109, 121, 164, 258, 371, 397, 717
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FatI	CATG	7 cut(s)	105, 117, 160, 254, 367, 393, 713
FokI	GGATG	2 cut(s)	17, 482
FriOI	GRGCYC	1 cut(s)	711
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	438
Hin1II	CATG	7 cut(s)	109, 121, 164, 258, 371, 397, 717
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	3 cut(s)	268, 412, 686
Hpy188III	TCNNGA	3 cut(s)	22, 343, 633
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	2 cut(s)	202, 500
HpyCH4III	ACNGT	4 cut(s)	328, 459, 560, 589
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	7 cut(s)	109, 197, 224, 432, 474, 495, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	492
HpyF3I	CTNAG	2 cut(s)	48, 705
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	7 cut(s)	109, 121, 164, 258, 371, 397, 717
Kzo9I	GATC	4 cut(s)	38, 283, 447, 528
LpnPI	CCDG	7 cut(s)	30, 66, 113, 198, 451, 465, 519
LweI	GCATC	3 cut(s)	184, 305, 504
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	12, 536
MalI	GATC	4 cut(s)	40, 285, 449, 530
MboI	GATC	4 cut(s)	38, 283, 447, 528
MboII	GAAGA	2 cut(s)	217, 674
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	2 cut(s)	26, 140
MnlI	CCTC	6 cut(s)	43, 105, 164, 286, 370, 629
Mph1103I	ATGCAT	3 cut(s)	111, 199, 629
MseI	TTAA	6 cut(s)	189, 353, 461, 548, 617, 648
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	634
MwoI	GCNNNNNNNGC	1 cut(s)	492
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	4 cut(s)	38, 283, 447, 528
NlaIII	CATG	7 cut(s)	109, 121, 164, 258, 371, 397, 717
NlaIV	GGNNCC	1 cut(s)	449
NmuCI	GTSAC	1 cut(s)	536
NruI	TCGCGA	1 cut(s)	634
NsiI	ATGCAT	3 cut(s)	111, 199, 629
NspI	RCATGY	2 cut(s)	121, 371
PciI	ACATGT	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	380
PscI	ACATGT	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	711
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	447
RruI	TCGCGA	1 cut(s)	634
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	711
SaqAI	TTAA	6 cut(s)	189, 353, 461, 548, 617, 648
Sau3AI	GATC	4 cut(s)	38, 283, 447, 528
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	1 cut(s)	711
SetI	ASST	4 cut(s)	129, 266, 570, 711
SfaNI	GCATC	3 cut(s)	184, 305, 504
SfcI	CTRYAG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	26, 140
SstI	GAGCTC	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	436
TaaI	ACNGT	4 cut(s)	328, 459, 560, 589
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	3 cut(s)	21, 364, 608
TasI	AATT	2 cut(s)	26, 140
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	6 cut(s)	189, 353, 461, 548, 617, 648
Tru9I	TTAA	6 cut(s)	189, 353, 461, 548, 617, 648
TscAI	CASTG	2 cut(s)	52, 709
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	3 cut(s)	94, 149, 153
TspGWI	ACGGA	2 cut(s)	276, 488
TspRI	CASTG	2 cut(s)	52, 709
XceI	RCATGY	2 cut(s)	121, 371
Zsp2I	ATGCAT	3 cut(s)	111, 199, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.