Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Reverse (-)

26097753 .. 26099666

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24550.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGTTGATCAATGGGAGGCAAGACAAAGTAGCTTCCAGCGCACCTTAACTGTTCTATCTAGAGTCAAGGGTTTCATATCTGAGGCTGGGCTGATAACAAGTGATTCCCTTAAGTGCATGCTTGTCTGTGGTTCTGATCTACTCCACTCTTTTGGCATTCCTGGATTTTGGATTCCTGAGCAGGTGAGGAGCATATGCAGAGATTACGGTGTGGTTTGCATTCGCAGGGATGGACAAGATGTTGACAAGATTATATCAAATGACGAAATTTTGACAGAGAACAAGGGTAACATAAAAGTGGTGGATGAACTTGTACCAAACCAAATAAGTTCGACGAGAGTAAGGGATTGCATCTCAAGAGGATTGTCAATAAAATATCTGACTGCAGATGAAGTAATTGATTACATTAGAGATCATCATCTGTACTTGAACACGAATGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

149

Amino Acids

16.81

Weight (kDa)

5.58

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	267
AfaI	GTAC	2 cut(s)	315, 425
AflII	CTTAAG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	196
BccI	CCATC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	1 cut(s)	7
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	384
BfrI	CTTAAG	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	235, 310
BseJI	GATNNNNATC	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	72, 168
BseRI	GAGGAG	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	86
BsmI	GAATGC	2 cut(s)	156, 219
Bsp143I	GATC	3 cut(s)	7, 136, 412
BspCNI	CTCAG	2 cut(s)	73, 169
BspMAI	CTGCAG	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	172
BspTI	CTTAAG	1 cut(s)	110
BssMI	GATC	3 cut(s)	7, 136, 412
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	52, 209
BstAFI	CTTAAG	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	81, 177
BstF5I	GGATG	2 cut(s)	235, 310
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	10, 139, 415
BstMBI	GATC	3 cut(s)	7, 136, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	384
BstXI	CCANNNNNNTGG	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	235, 310
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	314, 424
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	3 cut(s)	33, 86, 91
CviKI_1	RGCY	3 cut(s)	33, 86, 91
CviQI	GTAC	2 cut(s)	314, 424
DdeI	CTNAG	2 cut(s)	81, 177
DpnI	GATC	3 cut(s)	9, 138, 414
DpnII	GATC	3 cut(s)	7, 136, 412
EcoRII	CCWGG	1 cut(s)	160
FaeI	CATG	1 cut(s)	121
FaiI	YATR	6 cut(s)	77, 119, 194, 196, 254, 293
FatI	CATG	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	194
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	242, 317
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	90
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	63, 104, 172
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	82, 136, 381
Hpy188III	TCNNGA	3 cut(s)	60, 176, 357
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	337
HpyCH4III	ACNGT	2 cut(s)	52, 209
HpyCH4V	TGCA	5 cut(s)	117, 198, 219, 351, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	2 cut(s)	81, 177
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 136, 412
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	7 cut(s)	50, 72, 147, 167, 174, 189, 211
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	9, 138, 414
MboI	GATC	3 cut(s)	7, 136, 412
MluCI	AATT	2 cut(s)	267, 396
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	4 cut(s)	10, 76, 180, 353
MseI	TTAA	2 cut(s)	47, 111
MslI	CAYNNNNRTG	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	162
Mva1269I	GAATGC	2 cut(s)	156, 219
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	39
NdeI	CATATG	1 cut(s)	194
NdeII	GATC	3 cut(s)	7, 136, 412
NlaIII	CATG	1 cut(s)	121
NspI	RCATGY	1 cut(s)	121
PaeI	GCATGC	1 cut(s)	121
PaqCI	CACCTGC	1 cut(s)	172
PctI	GAATGC	2 cut(s)	156, 219
PfeI	GAWTC	2 cut(s)	104, 172
PfoI	TCCNGGA	1 cut(s)	160
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	315, 425
RsaNI	GTAC	2 cut(s)	314, 424
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	47, 111
Sau3AI	GATC	3 cut(s)	7, 136, 412
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	3 cut(s)	35, 47, 186
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	2 cut(s)	110, 355
SmoI	CTYRAG	2 cut(s)	110, 355
SphI	GCATGC	1 cut(s)	121
Sse9I	AATT	2 cut(s)	267, 396
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	52, 209
TaqI	TCGA	1 cut(s)	332
TasI	AATT	2 cut(s)	267, 396
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	2 cut(s)	104, 172
Tru1I	TTAA	2 cut(s)	47, 111
Tru9I	TTAA	2 cut(s)	47, 111
TspDTI	ATGAA	3 cut(s)	64, 321, 405
Vha464I	CTTAAG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	267
XbaI	TCTAGA	1 cut(s)	59
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.