Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Reverse (-)

69621885 .. 69626138

Gene Structure 4254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG517200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTGTTTGTTAATTTGTTTTTCTCTGTTTTGGGACAAGAAATATGTAGTTCTAGTAGCACCCGGAAGTTTCAATCCTCCTACTTACATGCATTTACGAATGTTGGAACTGGCGAGAGACGCATTGAATTCTGAAGGCTTTTGTGTGATTGGAGGTTATATTTCACCTGTTAATGATGCATACAACAAGAGGGGACTTATATCTGCTGAACATCGTATACAGTTGTGTCATCTAGCCTGCAAAAGTTCAGAGTTTGTAATGGTTGATCCATGGGAGGCAAGACAAAGTACCTTCCAACGATGTTTAACAGTACTGTCTAGAATCAAGGGTTTCTTGTCTGAGTCTGGGCTGATACCCGGTGGTAATGTTTGCAAAACTGTGATCCCTTATTTGCTTCTAAGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

135

Amino Acids

15.14

Weight (kDa)

8.18

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	19 - 99	2.3e-13	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	260, 376
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	2 cut(s)	289, 312
AgsI	TTSAA	2 cut(s)	73, 127
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	260, 376
ApoI	RAATTY	1 cut(s)	127
AsuC2I	CCSGG	2 cut(s)	63, 357
AsuHPI	GGTGA	1 cut(s)	156
BcnI	CCSGG	2 cut(s)	63, 357
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	3 cut(s)	53, 233, 318
BmcAI	AGTACT	1 cut(s)	312
Bme1390I	CCNGG	2 cut(s)	63, 357
BmrFI	CCNGG	2 cut(s)	63, 357
BmsI	GCATC	1 cut(s)	166
BpuMI	CCSGG	2 cut(s)	63, 357
BsaJI	CCNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	63, 357
BslFI	GGGAC	2 cut(s)	47, 207
BsmAI	GTCTC	1 cut(s)	111
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	47, 207
Bsp143I	GATC	2 cut(s)	265, 381
Bsp19I	CCATGG	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	331
BspPI	GGATC	2 cut(s)	260, 376
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	2 cut(s)	265, 381
BssNAI	GTATAC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	269
Bst1107I	GTATAC	1 cut(s)	218
Bst4CI	ACNGT	4 cut(s)	222, 310, 315, 379
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	2 cut(s)	339, 398
BstDSI	CCRYGG	1 cut(s)	269
BstKTI	GATC	2 cut(s)	268, 384
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	2 cut(s)	265, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	61, 355
BstZ17I	GTATAC	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	238
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	288, 311
CviAII	CATG	2 cut(s)	88, 270
CviJI	RGCY	3 cut(s)	138, 236, 349
CviKI_1	RGCY	3 cut(s)	138, 236, 349
CviQI	GTAC	2 cut(s)	288, 311
DdeI	CTNAG	2 cut(s)	339, 398
DpnI	GATC	2 cut(s)	267, 383
DpnII	GATC	2 cut(s)	265, 381
Eco130I	CCWWGG	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	269
EcoT22I	ATGCAT	2 cut(s)	93, 181
ErhI	CCWWGG	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	2 cut(s)	91, 273
FaiI	YATR	7 cut(s)	45, 89, 159, 181, 200, 218, 271
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	2 cut(s)	47, 207
FatI	CATG	2 cut(s)	87, 269
FblI	GTMKAC	1 cut(s)	217
FspBI	CTAG	3 cut(s)	53, 233, 318
HapII	CCGG	2 cut(s)	63, 357
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	91, 273
HinfI	GANTC	2 cut(s)	321, 341
HpaII	CCGG	2 cut(s)	63, 357
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	133, 250, 340
Hpy188III	TCNNGA	1 cut(s)	318
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	128, 301
HpyCH4III	ACNGT	4 cut(s)	222, 310, 315, 379
HpyCH4V	TGCA	4 cut(s)	91, 179, 240, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	339, 398
Hsp92II	CATG	2 cut(s)	91, 273
Kzo9I	GATC	2 cut(s)	265, 381
LpnPI	CCDG	6 cut(s)	76, 95, 180, 250, 330, 370
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	3 cut(s)	53, 233, 318
MalI	GATC	2 cut(s)	267, 383
MboI	GATC	2 cut(s)	265, 381
MluCI	AATT	2 cut(s)	12, 127
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	84, 319
MnlI	CCTC	4 cut(s)	87, 146, 183, 268
Mph1103I	ATGCAT	2 cut(s)	93, 181
MseI	TTAA	3 cut(s)	11, 171, 305
MspI	CCGG	2 cut(s)	63, 357
MspR9I	CCNGG	2 cut(s)	63, 357
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	2 cut(s)	63, 357
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	265, 381
NlaIII	CATG	2 cut(s)	91, 273
NsiI	ATGCAT	2 cut(s)	93, 181
NspI	RCATGY	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	321
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PsrI	GAACNNNNNNTAC	2 cut(s)	201, 233
RsaI	GTAC	2 cut(s)	289, 312
RsaNI	GTAC	2 cut(s)	288, 311
SaqAI	TTAA	3 cut(s)	11, 171, 305
Sau3AI	GATC	2 cut(s)	265, 381
ScaI	AGTACT	1 cut(s)	312
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	63, 357
SetI	ASST	3 cut(s)	157, 169, 293
SfaNI	GCATC	1 cut(s)	166
Sse9I	AATT	2 cut(s)	12, 127
SspMI	CTAG	3 cut(s)	53, 233, 318
StyD4I	CCNGG	2 cut(s)	61, 355
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	4 cut(s)	222, 310, 315, 379
TasI	AATT	2 cut(s)	12, 127
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	3 cut(s)	11, 171, 305
Tru9I	TTAA	3 cut(s)	11, 171, 305
XapI	RAATTY	1 cut(s)	127
XbaI	TCTAGA	1 cut(s)	317
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	217
XspI	CTAG	3 cut(s)	53, 233, 318
ZrmI	AGTACT	1 cut(s)	312
Zsp2I	ATGCAT	2 cut(s)	93, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.