Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Reverse (-)

39703071 .. 39706899

Gene Structure 3829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1261800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGACATTCCTCTGCCTGTTTGTAAATTAGCTCTACATTTGGTTAACCACGATGACAAGGACAAGAAATACGTAGTCCTAGTATCAACTGGAAGTTTCAATCCTCCTACCTATATGCATTTACGGATGATGGAGCTGGCAAGAGATACCCTGAATTCAGAAGGCTTTTGTGTCGTTGGAGCTTATATTTCACCTGTCAATGATGCTTACAGCAAGAAGGGCCTTATATCTGCTGAACACCGTGTACAGTTATGTCATCTTGCCTGTAAGAGTTCAGAGTTTATAATGGTTGATCAATGGGAGGCAAGACAAAGTAGCTTCCAGCGCACCTTAACTGTTCTATCTAGAGTCAAGGGTTTCATATCTGAGGCTGGGCTGATACCAAGTGATTCCCTTAAGTGCATGCTTGTCTGTGGTTCTGATCTACTCCACTCTTTTGGCATTCCTGGATTTTGGATTCCTGAGCAGGTGAGGAGCATATGCAGAGATTACGGTGTGGTTTGCATTCACAGGGATGGACAAGATGTTGACAAGATTATATCAAATGACAAAATTTTGACAGAGAACAAGGGTAACATAAAAGTGGTGGATGAACTTGTACCAAACCAAATAAGTTCGACGAGAGTAAGGGATTGCATCTCAAGAGGATTGTCAATAAAATATCTGACTGCAGATGAAGTAATTGATTACATTAGAGATCATCATCTGTACTTGAACACGAATGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

244

Amino Acids

27.39

Weight (kDa)

6.49

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	30 - 210	2.2e-16	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	457
AcsI	RAATTY	2 cut(s)	154, 552
AfaI	GTAC	3 cut(s)	246, 600, 710
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	100, 715
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	4 cut(s)	32, 136, 182, 318
AluI	AGCT	4 cut(s)	32, 136, 182, 318
AoxI	GGCC	1 cut(s)	220
ApoI	RAATTY	2 cut(s)	154, 552
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	183, 481
BccI	CCATC	2 cut(s)	124, 509
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	2 cut(s)	80, 345
BfmI	CTRYAG	1 cut(s)	669
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	193, 645
Bpu10I	CCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	625
BsaAI	YACGTR	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	702
Bse1I	ACTGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	447
BseGI	GGATG	3 cut(s)	132, 520, 595
BseJI	GATNNNNATC	1 cut(s)	702
BseMII	CTCAG	2 cut(s)	357, 453
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	487
BseYI	CCCAGC	1 cut(s)	371
BshFI	GGCC	1 cut(s)	222
BsmI	GAATGC	2 cut(s)	441, 504
BsnI	GGCC	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	292, 421, 697
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	358, 454
BspMAI	CTGCAG	1 cut(s)	673
BspMI	ACCTGC	1 cut(s)	457
BspTI	CTTAAG	1 cut(s)	395
BsrGI	TGTACA	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	94
BssMI	GATC	3 cut(s)	292, 421, 697
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	4 cut(s)	242, 249, 337, 494
BstAFI	CTTAAG	1 cut(s)	395
BstAUI	TGTACA	1 cut(s)	244
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	138, 404
BstDEI	CTNAG	2 cut(s)	366, 462
BstF5I	GGATG	3 cut(s)	132, 520, 595
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	3 cut(s)	295, 424, 700
BstMBI	GATC	3 cut(s)	292, 421, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 324
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	669
BstSNI	TACGTA	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	437
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	132, 520, 595
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	2 cut(s)	138, 404
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	245, 599, 709
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	8 cut(s)	32, 136, 165, 182, 222, 318, 371, 376
CviKI_1	RGCY	8 cut(s)	32, 136, 165, 182, 222, 318, 371, 376
CviQI	GTAC	3 cut(s)	245, 599, 709
DdeI	CTNAG	2 cut(s)	366, 462
DpnI	GATC	3 cut(s)	294, 423, 699
DpnII	GATC	3 cut(s)	292, 421, 697
Eco105I	TACGTA	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	120
FaeI	CATG	1 cut(s)	406
FatI	CATG	1 cut(s)	402
FauNDI	CATATG	1 cut(s)	479
FbaI	TGATCA	1 cut(s)	292
FokI	GGATG	3 cut(s)	139, 527, 602
FspBI	CTAG	2 cut(s)	80, 345
GlaI	GCGC	1 cut(s)	326
GsaI	CCCAGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	222
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	406
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	2 cut(s)	46, 529
HindII	GTYRAC	2 cut(s)	46, 529
HinfI	GANTC	3 cut(s)	348, 389, 457
HpaI	GTTAAC	1 cut(s)	46
HphI	GGTGA	2 cut(s)	183, 481
Hpy166II	GTNNAC	3 cut(s)	46, 245, 529
Hpy188I	TCNGA	5 cut(s)	160, 277, 367, 421, 666
Hpy188III	TCNNGA	3 cut(s)	345, 461, 642
Hpy8I	GTNNAC	3 cut(s)	46, 245, 529
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	2 cut(s)	155, 211
HpyCH4III	ACNGT	4 cut(s)	242, 249, 337, 494
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	6 cut(s)	118, 402, 483, 504, 636, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 324
HpyF3I	CTNAG	2 cut(s)	366, 462
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	406
HspAI	GCGC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	292
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	292, 421, 697
LmnI	GCTCC	3 cut(s)	133, 179, 474
LweI	GCATC	2 cut(s)	193, 645
MaeI	CTAG	2 cut(s)	80, 345
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	3 cut(s)	294, 423, 699
MboI	GATC	3 cut(s)	292, 421, 697
MluCI	AATT	4 cut(s)	26, 154, 552, 681
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	6 cut(s)	21, 114, 295, 361, 465, 638
Mph1103I	ATGCAT	1 cut(s)	120
MseI	TTAA	3 cut(s)	45, 332, 396
MslI	CAYNNNNRTG	2 cut(s)	513, 581
MspCI	CTTAAG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	2 cut(s)	441, 504
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	219, 324
NdeI	CATATG	1 cut(s)	479
NdeII	GATC	3 cut(s)	292, 421, 697
NlaIII	CATG	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	120
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	457
PctI	GAATGC	2 cut(s)	441, 504
PfeI	GAWTC	2 cut(s)	389, 457
PfoI	TCCNGGA	1 cut(s)	445
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	73
PsiI	TTATAA	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	445
PspPI	GGNCC	1 cut(s)	220
PsrI	GAACNNNNNNTAC	2 cut(s)	228, 260
PstI	CTGCAG	1 cut(s)	673
RsaI	GTAC	3 cut(s)	246, 600, 710
RsaNI	GTAC	3 cut(s)	245, 599, 709
RseI	CAYNNNNRTG	2 cut(s)	513, 581
SaqAI	TTAA	3 cut(s)	45, 332, 396
Sau3AI	GATC	3 cut(s)	292, 421, 697
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	9 cut(s)	34, 75, 113, 138, 184, 196, 320, 332, 471
SfaNI	GCATC	2 cut(s)	193, 645
SfcI	CTRYAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	2 cut(s)	513, 581
SmlI	CTYRAG	2 cut(s)	395, 640
SmoI	CTYRAG	2 cut(s)	395, 640
SnaBI	TACGTA	1 cut(s)	73
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	4 cut(s)	26, 154, 552, 681
SspMI	CTAG	2 cut(s)	80, 345
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	4 cut(s)	242, 249, 337, 494
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	617
TasI	AATT	4 cut(s)	26, 154, 552, 681
TatI	WGTACW	2 cut(s)	244, 708
TfiI	GAWTC	2 cut(s)	389, 457
Tru1I	TTAA	3 cut(s)	45, 332, 396
Tru9I	TTAA	3 cut(s)	45, 332, 396
TspDTI	ATGAA	3 cut(s)	349, 606, 690
TspGWI	ACGGA	1 cut(s)	139
Vha464I	CTTAAG	1 cut(s)	395
XapI	RAATTY	2 cut(s)	154, 552
XbaI	TCTAGA	1 cut(s)	344
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	2 cut(s)	80, 345
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.