Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Forward (+)

16341468 .. 16344909

Gene Structure 3442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G149500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGACATCCCTCTGCCTCTTAGTAAATTAGCTCTGCATTTGGTTAATCGCGACGACAAGGACAAAAAGTATGTAGTTCTAGTAGCAACTGGAAGTTTCAATCCTCCTACTTATATGCATTTACGAATGTTCGAGCTGGCGAGAGATGCACTGAATTCAGAAGGCTTTTGTGTCATTGGAGGTTATATGTCGCCTGTTAATGATGCGTACTATAAGAAGGGCCTTATATCAGCCGAACATCGTATACAGTTGTGCCATCTAGCCTGCCAGAGTTCAGAATTTATAATGGTTGATCCTTGGGAGGCAAGACAAAGTAACTTCCAACGCACTTTAACTGTTCTGTCTAGAGTCAAGGATTTCTTGTCTGAGGCTGGGCTGATACCCAGTGAATCTCTTAAGTGCATGCTTGTGTGTGGCTCTGATCTACTCCACTCTTTTGGCATTCCTGGAGTTTGGATTTCTGAACAGGTCAGAGGCATATGCAGAGATTATGGTGTGGTTTGCATTCGCAGGGAGGGACAAGATGTTGATACAATTATCTCAAATGATGAAATTTTGAAAGAAAACAAGGGCAACATAAGAATCGTGGACGATGTTGTACCGAACCAAATAAGTTCTACAAGAATAAGGGATTGCATTTCAAGAGGATTGTCGATTAAATATCTGACTGCAGATGAAGTAATTGTTTACATCAGAGAACATCATCTCTACTCCAACTCAAATGACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

244

Amino Acids

27.49

Weight (kDa)

5.98

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	244
AccII	CGCG	1 cut(s)	51
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	3 cut(s)	154, 278, 552
AfaI	GTAC	2 cut(s)	209, 600
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	3 cut(s)	100, 559, 642
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	2 cut(s)	32, 136
AluI	AGCT	2 cut(s)	32, 136
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	220
ApoI	RAATTY	3 cut(s)	154, 278, 552
AspS9I	GGNCC	1 cut(s)	220
BccI	CCATC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	447
BfaI	CTAG	3 cut(s)	80, 260, 345
BfmI	CTRYAG	1 cut(s)	669
BfrI	CTTAAG	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	2 cut(s)	136, 193
BmuI	ACTGGG	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	94, 384
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	94, 384
BseYI	CCCAGC	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	531
BsmFI	GGGAC	1 cut(s)	531
BsmI	GAATGC	2 cut(s)	441, 504
BsnI	GGCC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	292, 421
Bsp68I	TCGCGA	1 cut(s)	51
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	673
BspPI	GGATC	1 cut(s)	287
BspTI	CTTAAG	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	94, 384
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	2 cut(s)	292, 421
BssNAI	GTATAC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	296
Bst1107I	GTATAC	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	249, 337
BstAFI	CTTAAG	1 cut(s)	395
BstC8I	GCNNGC	3 cut(s)	138, 265, 404
BstDEI	CTNAG	2 cut(s)	20, 366
BstF5I	GGATG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	2 cut(s)	295, 424
BstMBI	GATC	2 cut(s)	292, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	2 cut(s)	406, 730
BstSCI	CCNGG	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	669
BstUI	CGCG	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	437
BstZ17I	GTATAC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	6
BtsIMutI	CAGTG	2 cut(s)	149, 391
BtuMI	TCGCGA	1 cut(s)	51
Cac8I	GCNNGC	3 cut(s)	138, 265, 404
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	208, 599
CviAII	CATG	2 cut(s)	403, 727
CviJI	RGCY	9 cut(s)	32, 136, 165, 222, 233, 263, 371, 376, 417
CviKI_1	RGCY	9 cut(s)	32, 136, 165, 222, 233, 263, 371, 376, 417
CviQI	GTAC	2 cut(s)	208, 599
DdeI	CTNAG	2 cut(s)	20, 366
DpnI	GATC	2 cut(s)	294, 423
DpnII	GATC	2 cut(s)	292, 421
Eco130I	CCWWGG	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	296
EcoT22I	ATGCAT	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	406, 730
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	2 cut(s)	402, 726
FauNDI	CATATG	1 cut(s)	479
FblI	GTMKAC	1 cut(s)	244
FspBI	CTAG	3 cut(s)	80, 260, 345
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	406, 730
HinfI	GANTC	3 cut(s)	348, 389, 582
Hpy166II	GTNNAC	3 cut(s)	245, 589, 688
Hpy188I	TCNGA	8 cut(s)	160, 277, 367, 421, 463, 473, 666, 695
Hpy188III	TCNNGA	3 cut(s)	50, 345, 642
Hpy8I	GTNNAC	3 cut(s)	245, 589, 688
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	155, 211
HpyCH4III	ACNGT	2 cut(s)	249, 337
HpyCH4V	TGCA	8 cut(s)	37, 118, 149, 402, 483, 504, 636, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	20, 366
Hsp92II	CATG	2 cut(s)	406, 730
Kzo9I	GATC	2 cut(s)	292, 421
LweI	GCATC	2 cut(s)	136, 193
MaeI	CTAG	3 cut(s)	80, 260, 345
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	2 cut(s)	294, 423
MboI	GATC	2 cut(s)	292, 421
MluCI	AATT	6 cut(s)	26, 154, 278, 534, 552, 681
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	9 cut(s)	21, 27, 114, 173, 295, 361, 467, 508, 638
Mph1103I	ATGCAT	1 cut(s)	120
MseI	TTAA	5 cut(s)	45, 198, 332, 396, 657
MslI	CAYNNNNRTG	1 cut(s)	407
MspCI	CTTAAG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	2 cut(s)	441, 504
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeI	CATATG	1 cut(s)	479
NdeII	GATC	2 cut(s)	292, 421
NlaIII	CATG	2 cut(s)	406, 730
NruI	TCGCGA	1 cut(s)	51
NsiI	ATGCAT	1 cut(s)	120
NspI	RCATGY	2 cut(s)	406, 730
PaeI	GCATGC	1 cut(s)	406
PciI	ACATGT	1 cut(s)	726
PctI	GAATGC	2 cut(s)	441, 504
PfeI	GAWTC	2 cut(s)	389, 582
PfoI	TCCNGGA	1 cut(s)	445
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PscI	ACATGT	1 cut(s)	726
PsiI	TTATAA	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	445
PspPI	GGNCC	1 cut(s)	220
PsrI	GAACNNNNNNTAC	2 cut(s)	228, 260
PstI	CTGCAG	1 cut(s)	673
RruI	TCGCGA	1 cut(s)	51
RsaI	GTAC	2 cut(s)	209, 600
RsaNI	GTAC	2 cut(s)	208, 599
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	5 cut(s)	45, 198, 332, 396, 657
Sau3AI	GATC	2 cut(s)	292, 421
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	4 cut(s)	34, 138, 184, 471
SfaNI	GCATC	2 cut(s)	136, 193
SfcI	CTRYAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	6 cut(s)	26, 154, 278, 534, 552, 681
SspMI	CTAG	3 cut(s)	80, 260, 345
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	2 cut(s)	249, 337
TaqI	TCGA	2 cut(s)	132, 653
TasI	AATT	6 cut(s)	26, 154, 278, 534, 552, 681
TfiI	GAWTC	2 cut(s)	389, 582
Tru1I	TTAA	5 cut(s)	45, 198, 332, 396, 657
Tru9I	TTAA	5 cut(s)	45, 198, 332, 396, 657
TscAI	CASTG	2 cut(s)	156, 391
TspDTI	ATGAA	2 cut(s)	564, 690
TspRI	CASTG	2 cut(s)	156, 391
Vha464I	CTTAAG	1 cut(s)	395
XapI	RAATTY	3 cut(s)	154, 278, 552
XbaI	TCTAGA	1 cut(s)	344
XceI	RCATGY	2 cut(s)	406, 730
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	3 cut(s)	80, 260, 345
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.