Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Forward (+)

1072100 .. 1077054

Gene Structure 4955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATATCCCTCTGCCTCTTAGTAAATTGGCTATGCATTTGGTTAATCACGACGACAAGGACAAGAAATATGTAGTTCTAGTAGCACCCGGAAGTTTCAATCCTCCTACTTACATGCATTTACGAATGTTGGAACTGGCGAGAGACGCTTTGAATTCTGAAGGCTTTTGTGTGATTGGAGGTTATATTTCACCTGTTAATGATGCATACAACAAGAGGGGACTTATATCTGCTGAACATCGTATACAGTTGTGTCATCTAGCCTGCAAAAGTTCAGAGTTTGTAATGGTTGATCCATGGGAGGCAAGACAAAGTACCTTCCAACGATGTTTAACAGTACTGTCTAGAATCAAGGGTTTCTTGTCTGAGTCTGGGCTGATACCCAGTGAATCCCTGAAGTGCGTGCTTGTCTGTGGTTCTGATCTACTCCACTCTTTTAGCATTCCTGGAGTTTGGATTCCAGACCAGGTCAGGAGCATATGTAGAGACTATGGTGTGGTTTGCATTCGCAGGGAGGGACAAGATGTTGACAAGATAATGTCAAATGATGATATTTTGAGGGAGAATAGGGGTAACATAAGAATTGTGGATGAGCTTGTACCAAACCAAGTAAGCTCGACAAGAGTAAGAGCTCCGGTTCTTACTATCTTTTGCTTCAGGACTTCCTATTTCTGTGCTTCAAAAAGCTGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

231

Amino Acids

25.96

Weight (kDa)

7.97

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	28 - 211	2.4e-17	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	3 cut(s)	180, 416, 640
AfaI	GTAC	3 cut(s)	316, 339, 600
AgsI	TTSAA	3 cut(s)	100, 154, 681
AjnI	CCWGG	2 cut(s)	445, 465
AluBI	AGCT	4 cut(s)	595, 615, 632, 687
AluI	AGCT	4 cut(s)	595, 615, 632, 687
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	2 cut(s)	138, 480
AlwI	GGATC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	687, 690
ApoI	RAATTY	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	674, 677
BciT130I	CCWGG	2 cut(s)	447, 467
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	138, 480
BfaI	CTAG	3 cut(s)	80, 260, 345
BisI	GCNGC	2 cut(s)	688, 691
BlsI	GCNGC	2 cut(s)	689, 692
BmcAI	AGTACT	1 cut(s)	339
Bme1390I	CCNGG	3 cut(s)	90, 447, 467
BmrFI	CCNGG	3 cut(s)	90, 447, 467
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	634
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bse1I	ACTGG	2 cut(s)	141, 384
BseBI	CCWGG	2 cut(s)	447, 467
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	595
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	141, 384
BseXI	GCAGC	2 cut(s)	674, 677
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	2 cut(s)	90, 635
BslFI	GGGAC	2 cut(s)	234, 531
BsmAI	GTCTC	2 cut(s)	138, 480
BsmBI	CGTCTC	1 cut(s)	138
BsmFI	GGGAC	2 cut(s)	234, 531
BsmI	GAATGC	2 cut(s)	441, 504
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	2 cut(s)	292, 421
Bsp19I	CCATGG	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	358
BspPI	GGATC	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	141, 384
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	2 cut(s)	292, 421
BssNAI	GTATAC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	296
Bst1107I	GTATAC	1 cut(s)	245
Bst2UI	CCWGG	2 cut(s)	447, 467
Bst4CI	ACNGT	3 cut(s)	249, 337, 342
BstC8I	GCNNGC	2 cut(s)	265, 404
BstDEI	CTNAG	2 cut(s)	20, 366
BstDSI	CCRYGG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	595
BstKTI	GATC	2 cut(s)	295, 424
BstMAI	GTCTC	2 cut(s)	138, 480
BstMBI	GATC	2 cut(s)	292, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	2 cut(s)	447, 467
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	3 cut(s)	88, 445, 465
BstV1I	GCAGC	2 cut(s)	674, 677
BstZ17I	GTATAC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	265, 404
CseI	GACGC	1 cut(s)	155
CsiI	ACCWGGT	1 cut(s)	465
Csp6I	GTAC	3 cut(s)	315, 338, 599
CviAII	CATG	2 cut(s)	115, 297
CviJI	RGCY	8 cut(s)	32, 165, 263, 376, 595, 615, 632, 687
CviKI_1	RGCY	8 cut(s)	32, 165, 263, 376, 595, 615, 632, 687
CviQI	GTAC	3 cut(s)	315, 338, 599
DdeI	CTNAG	2 cut(s)	20, 366
DpnI	GATC	2 cut(s)	294, 423
DpnII	GATC	2 cut(s)	292, 421
Ecl136II	GAGCTC	1 cut(s)	632
Eco130I	CCWWGG	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	634
Eco32I	GATATC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	632
Eco57I	CTGAAG	3 cut(s)	180, 416, 640
EcoICRI	GAGCTC	1 cut(s)	632
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	445, 465
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	296
EcoT22I	ATGCAT	3 cut(s)	39, 120, 208
EcoT38I	GRGCYC	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	296
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	2 cut(s)	118, 300
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	2 cut(s)	234, 531
FatI	CATG	2 cut(s)	114, 296
FauNDI	CATATG	1 cut(s)	479
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	688, 691
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	634
Fsp4HI	GCNGC	2 cut(s)	688, 691
FspBI	CTAG	3 cut(s)	80, 260, 345
GluI	GCNGC	2 cut(s)	688, 691
GsuI	CTGGAG	1 cut(s)	468
HapII	CCGG	2 cut(s)	90, 635
HgaI	GACGC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	118, 300
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	4 cut(s)	348, 368, 389, 457
HpaII	CCGG	2 cut(s)	90, 635
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	2 cut(s)	245, 529
Hpy188I	TCNGA	4 cut(s)	160, 277, 367, 421
Hpy188III	TCNNGA	5 cut(s)	50, 345, 461, 472, 658
Hpy8I	GTNNAC	2 cut(s)	245, 529
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	155, 328
HpyCH4III	ACNGT	3 cut(s)	249, 337, 342
HpyCH4V	TGCA	5 cut(s)	37, 118, 206, 267, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	20, 366
Hsp92II	CATG	2 cut(s)	118, 300
Kzo9I	GATC	2 cut(s)	292, 421
LmnI	GCTCC	2 cut(s)	474, 637
Lsp1109I	GCAGC	2 cut(s)	674, 677
LweI	GCATC	1 cut(s)	193
MabI	ACCWGGT	1 cut(s)	465
MaeI	CTAG	3 cut(s)	80, 260, 345
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	2 cut(s)	294, 423
MboI	GATC	2 cut(s)	292, 421
MhlI	GDGCHC	1 cut(s)	634
MluCI	AATT	3 cut(s)	26, 154, 582
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	2 cut(s)	111, 346
MnlI	CCTC	8 cut(s)	21, 27, 114, 173, 210, 295, 508, 552
Mph1103I	ATGCAT	3 cut(s)	39, 120, 208
MseI	TTAA	3 cut(s)	45, 198, 332
MspI	CCGG	2 cut(s)	90, 635
MspR9I	CCNGG	3 cut(s)	90, 447, 467
Mva1269I	GAATGC	2 cut(s)	441, 504
MvaI	CCWGG	2 cut(s)	447, 467
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	296
NdeI	CATATG	1 cut(s)	479
NdeII	GATC	2 cut(s)	292, 421
NlaIII	CATG	2 cut(s)	118, 300
NsiI	ATGCAT	3 cut(s)	39, 120, 208
NspI	RCATGY	1 cut(s)	118
PctI	GAATGC	2 cut(s)	441, 504
PfeI	GAWTC	3 cut(s)	348, 389, 457
PflFI	GACNNNGTC	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	445
PkrI	GCNGC	2 cut(s)	689, 692
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	634
Psp6I	CCWGG	2 cut(s)	445, 465
PspGI	CCWGG	2 cut(s)	445, 465
PsrI	GAACNNNNNNTAC	2 cut(s)	228, 260
PsyI	GACNNNGTC	1 cut(s)	467
RsaI	GTAC	3 cut(s)	316, 339, 600
RsaNI	GTAC	3 cut(s)	315, 338, 599
SacI	GAGCTC	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	45, 198, 332
SatI	GCNGC	2 cut(s)	688, 691
Sau3AI	GATC	2 cut(s)	292, 421
ScaI	AGTACT	1 cut(s)	339
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	3 cut(s)	90, 447, 467
SduI	GDGCHC	1 cut(s)	634
SetI	ASST	8 cut(s)	184, 196, 320, 471, 597, 617, 634, 689
SexAI	ACCWGGT	1 cut(s)	465
SfaNI	GCATC	1 cut(s)	193
Sse9I	AATT	3 cut(s)	26, 154, 582
SspMI	CTAG	3 cut(s)	80, 260, 345
SstI	GAGCTC	1 cut(s)	634
StyD4I	CCNGG	3 cut(s)	88, 445, 465
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	3 cut(s)	249, 337, 342
TaqI	TCGA	1 cut(s)	617
TasI	AATT	3 cut(s)	26, 154, 582
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	3 cut(s)	348, 389, 457
Tru1I	TTAA	3 cut(s)	45, 198, 332
Tru9I	TTAA	3 cut(s)	45, 198, 332
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	2 cut(s)	687, 690
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	467
XapI	RAATTY	1 cut(s)	154
XbaI	TCTAGA	1 cut(s)	344
XceI	RCATGY	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	3 cut(s)	80, 260, 345
ZrmI	AGTACT	1 cut(s)	339
Zsp2I	ATGCAT	3 cut(s)	39, 120, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.