Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Reverse (-)

69103965 .. 69112270

Gene Structure 8306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG485700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCCGACGCCTTTGGTGGTGAATTGGCGCGAAAATGAGGTGGGGTTGGCTTACCAGTCTTGCTCCCGCGTCTACCGAGCTTGGAGCTTGGGTCGCAGAAGCACAATCAGGTCCACGTGGCTAAAAGGAGAGAGATCTGTAGTTCTTCAATCTCAAACGGGTGTCATGGATATCCCTCTGCCTCTTACTAAATTGGCTATGCATTTGGTTAATCACGACGACAAGGACAAGAAATATGTAGTTCTAGTAGCACCCGGAAGTTTCAATCCTCCTACTTACATGCATTTACGAATGTTGGAACTGGCGAGAGACGCATTGAATTCTGAAGGCTTTTGTGTGATTGGAGGTTATATTTCACCTGTTAATGATGCATACAACAAGAGGGGACTTATATCTGCTGAACATCGTATACAGTTGTGTCATCTAGCCTGCAAAAGTTCAGAGTTTGTAACGGTTGATCCATGGGAGGCAAGACAAAGTACCTTCCAACGATGTTTAACAGTACTGTCTAGAATCAAGGGTTTCTTGTCTGAGTCTGGGCTGATACCCAGTGAATCCCTGAAGTGCATGCTTGTCTGTGGTTCTGATCTACTCCACTCTTTTAGCATTCCTGGAGTTTGGATTCCAGACCAGGTCAGGAGCATATGTAGAGATTATGGTGTGGTTTGCATTCGCAGGGAGGGACAAGATGTTGACAAGATAATGTCAAATGATGATATTTTGAGGGAGAATAGGGGTAACATAAGAATTGTGGATGAGCTTGTACCAAACCAAATAAGCTCGACAAGAGTAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

265

Amino Acids

29.95

Weight (kDa)

8.73

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	83 - 265	6.9e-17	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	72, 409
AccII	CGCG	2 cut(s)	30, 69
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	2 cut(s)	345, 581
AcvI	CACGTG	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	3 cut(s)	481, 504, 765
AgsI	TTSAA	3 cut(s)	149, 265, 319
AjnI	CCWGG	2 cut(s)	610, 630
AluBI	AGCT	4 cut(s)	80, 87, 760, 780
AluI	AGCT	4 cut(s)	80, 87, 760, 780
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	452
ApoI	RAATTY	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	31, 348
AvaII	GGWCC	1 cut(s)	111
BbrPI	CACGTG	1 cut(s)	117
BciT130I	CCWGG	2 cut(s)	612, 632
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	3 cut(s)	245, 425, 510
BfmI	CTRYAG	1 cut(s)	138
BglII	AGATCT	1 cut(s)	134
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	3 cut(s)	255, 612, 632
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmrFI	CCNGG	3 cut(s)	255, 612, 632
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	543
BpmI	CTGGAG	1 cut(s)	633
BpuMI	CCSGG	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	461
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 631, 661
Bse1I	ACTGG	3 cut(s)	55, 306, 549
BseBI	CCWGG	2 cut(s)	612, 632
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	1 cut(s)	760
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	3 cut(s)	55, 306, 549
Bsh1236I	CGCG	2 cut(s)	30, 69
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	2 cut(s)	399, 696
BsmAI	GTCTC	1 cut(s)	303
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	2 cut(s)	399, 696
BsmI	GAATGC	2 cut(s)	606, 669
Bsp143I	GATC	3 cut(s)	134, 457, 586
Bsp19I	CCATGG	1 cut(s)	461
BspACI	CCGC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	523
BspFNI	CGCG	2 cut(s)	30, 69
BspPI	GGATC	1 cut(s)	452
BsrI	ACTGG	3 cut(s)	55, 306, 549
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	3 cut(s)	134, 457, 586
BssNAI	GTATAC	1 cut(s)	410
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	461
Bst1107I	GTATAC	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	612, 632
Bst4CI	ACNGT	4 cut(s)	414, 454, 502, 507
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	430, 569
BstDEI	CTNAG	1 cut(s)	531
BstDSI	CCRYGG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	760
BstFNI	CGCG	2 cut(s)	30, 69
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	3 cut(s)	137, 460, 589
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	3 cut(s)	134, 457, 586
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 311
BstNI	CCWGG	2 cut(s)	612, 632
BstNSI	RCATGY	2 cut(s)	283, 571
BstSCI	CCNGG	3 cut(s)	253, 610, 630
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	2 cut(s)	30, 69
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BstZ17I	GTATAC	1 cut(s)	410
BtgI	CCRYGG	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	760
BtsIMutI	CAGTG	1 cut(s)	556
Cac8I	GCNNGC	2 cut(s)	430, 569
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	111
CseI	GACGC	3 cut(s)	16, 58, 320
CsiI	ACCWGGT	1 cut(s)	630
Csp6I	GTAC	3 cut(s)	480, 503, 764
CviAII	CATG	4 cut(s)	166, 280, 462, 568
CviQI	GTAC	3 cut(s)	480, 503, 764
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	3 cut(s)	136, 459, 588
DpnII	GATC	3 cut(s)	134, 457, 586
Eco130I	CCWWGG	1 cut(s)	461
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	345, 581
Eco72I	CACGTG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	2 cut(s)	610, 630
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	461
EcoT22I	ATGCAT	3 cut(s)	204, 285, 373
ErhI	CCWWGG	1 cut(s)	461
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	4 cut(s)	169, 283, 465, 571
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	2 cut(s)	399, 696
FatI	CATG	4 cut(s)	165, 279, 461, 567
FauI	CCCGC	1 cut(s)	74
FauNDI	CATATG	1 cut(s)	644
FblI	GTMKAC	2 cut(s)	72, 409
FokI	GGATG	1 cut(s)	767
FspBI	CTAG	3 cut(s)	245, 425, 510
GlaI	GCGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	633
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	3 cut(s)	16, 58, 320
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	4 cut(s)	169, 283, 465, 571
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HinfI	GANTC	4 cut(s)	513, 533, 554, 622
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	2 cut(s)	31, 348
Hpy166II	GTNNAC	4 cut(s)	73, 114, 410, 694
Hpy188I	TCNGA	4 cut(s)	325, 442, 532, 586
Hpy188III	TCNNGA	4 cut(s)	215, 510, 626, 637
Hpy8I	GTNNAC	4 cut(s)	73, 114, 410, 694
Hpy99I	CGWCG	2 cut(s)	10, 221
HpyAV	CCTTC	2 cut(s)	320, 493
HpyCH4III	ACNGT	4 cut(s)	414, 454, 502, 507
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	6 cut(s)	202, 283, 371, 432, 567, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 311
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	4 cut(s)	169, 283, 465, 571
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	134, 457, 586
LmnI	GCTCC	3 cut(s)	68, 84, 639
LweI	GCATC	1 cut(s)	358
MabI	ACCWGGT	1 cut(s)	630
MaeI	CTAG	3 cut(s)	245, 425, 510
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	448, 737
MalI	GATC	3 cut(s)	136, 459, 588
MboI	GATC	3 cut(s)	134, 457, 586
MboII	GAAGA	1 cut(s)	137
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	4 cut(s)	22, 191, 319, 747
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	2 cut(s)	276, 511
MnlI	CCTC	9 cut(s)	31, 186, 192, 279, 338, 375, 460, 673, 717
Mph1103I	ATGCAT	3 cut(s)	204, 285, 373
MseI	TTAA	3 cut(s)	210, 363, 497
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	3 cut(s)	255, 612, 632
Mva1269I	GAATGC	2 cut(s)	606, 669
MvaI	CCWGG	2 cut(s)	612, 632
MvnI	CGCG	2 cut(s)	30, 69
MwoI	GCNNNNNNNGC	2 cut(s)	93, 311
NciI	CCSGG	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	461
NdeI	CATATG	1 cut(s)	644
NdeII	GATC	3 cut(s)	134, 457, 586
NlaIII	CATG	4 cut(s)	169, 283, 465, 571
NsiI	ATGCAT	3 cut(s)	204, 285, 373
NspI	RCATGY	2 cut(s)	283, 571
PaeI	GCATGC	1 cut(s)	571
PctI	GAATGC	2 cut(s)	606, 669
PfeI	GAWTC	3 cut(s)	513, 554, 622
PflFI	GACNNNGTC	1 cut(s)	632
PfoI	TCCNGGA	1 cut(s)	610
PleI	GAGTC	1 cut(s)	541
PmaCI	CACGTG	1 cut(s)	117
PmlI	CACGTG	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	610, 630
PspCI	CACGTG	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	610, 630
PspPI	GGNCC	1 cut(s)	111
PsrI	GAACNNNNNNTAC	2 cut(s)	393, 425
PsuI	RGATCY	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	632
RsaI	GTAC	3 cut(s)	481, 504, 765
RsaNI	GTAC	3 cut(s)	480, 503, 764
SaqAI	TTAA	3 cut(s)	210, 363, 497
Sau3AI	GATC	3 cut(s)	134, 457, 586
Sau96I	GGNCC	1 cut(s)	111
ScaI	AGTACT	1 cut(s)	504
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	3 cut(s)	255, 612, 632
SexAI	ACCWGGT	1 cut(s)	630
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	111
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	4 cut(s)	22, 191, 319, 747
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	3 cut(s)	245, 425, 510
StyD4I	CCNGG	3 cut(s)	253, 610, 630
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	4 cut(s)	414, 454, 502, 507
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	782
TasI	AATT	4 cut(s)	22, 191, 319, 747
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	3 cut(s)	513, 554, 622
Tru1I	TTAA	3 cut(s)	210, 363, 497
Tru9I	TTAA	3 cut(s)	210, 363, 497
TscAI	CASTG	1 cut(s)	556
TspRI	CASTG	1 cut(s)	556
Tth111I	GACNNNGTC	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	509
XceI	RCATGY	2 cut(s)	283, 571
XmiI	GTMKAC	2 cut(s)	72, 409
XspI	CTAG	3 cut(s)	245, 425, 510
ZrmI	AGTACT	1 cut(s)	504
Zsp2I	ATGCAT	3 cut(s)	204, 285, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.