Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Forward (+)

6864245 .. 6869567

Gene Structure 5323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGATATCCCTCTGCCTCTTAGTAAATTGGCTATGCATTTGGTTAATCACGACGACAAGGACAAGAAATATGTAGTTCTAGTAGCAACTGGAAGTTTCAATCCTCCTACTTACATGCATTTACGAATGTTGGAAATGGCGAGAGACGCGTTGAATTCTGAAGGCTTTTGTGTGATTGGAGGTTATATTTCGCCTGTTAATGATGCATACAACAAGAGGGGACTTATATCTGCTGAACATCGTATACAATTGTGTCATCTAGCCTGCAAAAGTTCGGAATTTGTAATGGTTGATCCATGGGAGGCAAGACAAAGTACATTCCAACGAACTTTAACAGTACTGTCTAGAGTCAAGGGCTTCTTTTCCGCATCTGGGCTGATACCCAGTGAATCCCTGAAGTGCATGCTTGTCTGTGGTTCTGATCTACTCCACTCTTTTAGCATTCCTGGAGTTTGGATTCCCGACCAGATCAGGGGCATATGTAGAGATTATGGTGTGGTTTGCATTCGCAGGGAGGGACAAGATGTTGACAAGATAATGTCAAATGACGATATTTTGAGGGAGAATAGGGGTAACATAAGAATTGTGGATGAGCTTGTACCAAACCAAATAAGCTCAACAAGAGTAAGGGATTGCATCTCAAGAGGATTGTCGATAAAATATCTGACTGCAGATAAAGTAATTGATTATATTAAAGAGCAACATCTCTTCTTGAACTCAGATGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

244

Amino Acids

27.46

Weight (kDa)

7.03

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	29 - 210	9.7e-18	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	244
AccII	CGCG	1 cut(s)	149
AciI	CCGC	1 cut(s)	366
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	2 cut(s)	154, 278
AcuI	CTGAAG	2 cut(s)	180, 416
AfaI	GTAC	3 cut(s)	316, 339, 600
AfiI	CCNNNNNNNGG	2 cut(s)	372, 472
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	100, 154, 715
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	2 cut(s)	595, 615
AluI	AGCT	2 cut(s)	595, 615
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	154, 278
BciT130I	CCWGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	3 cut(s)	80, 260, 345
BfmI	CTRYAG	1 cut(s)	669
BmcAI	AGTACT	1 cut(s)	339
Bme1390I	CCNGG	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	3 cut(s)	193, 377, 645
BmuI	ACTGGG	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	625
BsaJI	CCNNGG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 472
Bse1I	ACTGG	2 cut(s)	94, 384
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	2 cut(s)	372, 472
BseMII	CTCAG	1 cut(s)	732
BseNI	ACTGG	2 cut(s)	94, 384
Bsh1236I	CGCG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	234, 531
BslI	CCNNNNNNNGG	2 cut(s)	372, 472
BsmAI	GTCTC	1 cut(s)	138
BsmBI	CGTCTC	1 cut(s)	138
BsmFI	GGGAC	2 cut(s)	234, 531
BsmI	GAATGC	2 cut(s)	441, 504
Bsp143I	GATC	3 cut(s)	292, 421, 468
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	1 cut(s)	366
BspCNI	CTCAG	1 cut(s)	731
BspFNI	CGCG	1 cut(s)	149
BspMAI	CTGCAG	1 cut(s)	673
BspPI	GGATC	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	94, 384
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	3 cut(s)	292, 421, 468
BssNAI	GTATAC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	296
Bst1107I	GTATAC	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	337, 342
Bst6I	CTCTTC	1 cut(s)	713
BstC8I	GCNNGC	2 cut(s)	265, 404
BstDEI	CTNAG	2 cut(s)	20, 718
BstDSI	CCRYGG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	3 cut(s)	295, 424, 471
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	3 cut(s)	292, 421, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	2 cut(s)	118, 406
BstSCI	CCNGG	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	669
BstUI	CGCG	1 cut(s)	149
BstZ17I	GTATAC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	265, 404
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	315, 338, 599
CviAII	CATG	3 cut(s)	115, 297, 403
CviJI	RGCY	7 cut(s)	32, 165, 263, 357, 376, 595, 615
CviKI_1	RGCY	7 cut(s)	32, 165, 263, 357, 376, 595, 615
CviQI	GTAC	3 cut(s)	315, 338, 599
DdeI	CTNAG	2 cut(s)	20, 718
DpnI	GATC	3 cut(s)	294, 423, 470
DpnII	GATC	3 cut(s)	292, 421, 468
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
Eco130I	CCWWGG	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	180, 416
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	445
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	296
EcoT22I	ATGCAT	3 cut(s)	39, 120, 208
ErhI	CCWWGG	1 cut(s)	296
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	3 cut(s)	118, 300, 406
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	2 cut(s)	234, 531
FatI	CATG	3 cut(s)	114, 296, 402
FauNDI	CATATG	1 cut(s)	479
FblI	GTMKAC	1 cut(s)	244
FokI	GGATG	1 cut(s)	602
FspBI	CTAG	3 cut(s)	80, 260, 345
GsuI	CTGGAG	1 cut(s)	468
HgaI	GACGC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	118, 300, 406
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	3 cut(s)	348, 389, 457
Hpy166II	GTNNAC	2 cut(s)	245, 529
Hpy188I	TCNGA	5 cut(s)	160, 277, 421, 666, 721
Hpy188III	TCNNGA	5 cut(s)	50, 345, 461, 642, 712
Hpy8I	GTNNAC	2 cut(s)	245, 529
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	2 cut(s)	337, 342
HpyCH4V	TGCA	8 cut(s)	37, 118, 206, 267, 402, 504, 636, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	20, 718
Hsp92II	CATG	3 cut(s)	118, 300, 406
Kzo9I	GATC	3 cut(s)	292, 421, 468
LweI	GCATC	3 cut(s)	193, 377, 645
MaeI	CTAG	3 cut(s)	80, 260, 345
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	3 cut(s)	294, 423, 470
MboI	GATC	3 cut(s)	292, 421, 468
MboII	GAAGA	1 cut(s)	700
MfeI	CAATTG	1 cut(s)	248
MluCI	AATT	6 cut(s)	26, 154, 248, 278, 582, 681
MluI	ACGCGT	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	2 cut(s)	111, 346
MnlI	CCTC	9 cut(s)	21, 27, 114, 173, 210, 295, 508, 552, 638
Mph1103I	ATGCAT	3 cut(s)	39, 120, 208
MseI	TTAA	4 cut(s)	45, 198, 332, 693
MspR9I	CCNGG	1 cut(s)	447
MunI	CAATTG	1 cut(s)	248
Mva1269I	GAATGC	2 cut(s)	441, 504
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	296
NdeI	CATATG	1 cut(s)	479
NdeII	GATC	3 cut(s)	292, 421, 468
NlaIII	CATG	3 cut(s)	118, 300, 406
NsiI	ATGCAT	3 cut(s)	39, 120, 208
NspI	RCATGY	2 cut(s)	118, 406
PaeI	GCATGC	1 cut(s)	406
PctI	GAATGC	2 cut(s)	441, 504
PfeI	GAWTC	2 cut(s)	389, 457
PfoI	TCCNGGA	1 cut(s)	445
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PsrI	GAACNNNNNNTAC	2 cut(s)	228, 260
PstI	CTGCAG	1 cut(s)	673
RsaI	GTAC	3 cut(s)	316, 339, 600
RsaNI	GTAC	3 cut(s)	315, 338, 599
SaqAI	TTAA	4 cut(s)	45, 198, 332, 693
Sau3AI	GATC	3 cut(s)	292, 421, 468
ScaI	AGTACT	1 cut(s)	339
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	3 cut(s)	184, 597, 617
SfaNI	GCATC	3 cut(s)	193, 377, 645
SfcI	CTRYAG	1 cut(s)	669
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	6 cut(s)	26, 154, 248, 278, 582, 681
SsiI	CCGC	1 cut(s)	366
SspMI	CTAG	3 cut(s)	80, 260, 345
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	2 cut(s)	337, 342
TaqI	TCGA	1 cut(s)	653
TasI	AATT	6 cut(s)	26, 154, 248, 278, 582, 681
TatI	WGTACW	2 cut(s)	314, 337
TfiI	GAWTC	2 cut(s)	389, 457
Tru1I	TTAA	4 cut(s)	45, 198, 332, 693
Tru9I	TTAA	4 cut(s)	45, 198, 332, 693
TscAI	CASTG	1 cut(s)	391
TspRI	CASTG	1 cut(s)	391
XapI	RAATTY	2 cut(s)	154, 278
XbaI	TCTAGA	1 cut(s)	344
XceI	RCATGY	2 cut(s)	118, 406
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	3 cut(s)	80, 260, 345
ZrmI	AGTACT	1 cut(s)	339
Zsp2I	ATGCAT	3 cut(s)	39, 120, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.