Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Forward (+)

13723532 .. 13728123

Gene Structure 4592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG136900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAGTAAAACAAGAGCACAAAAGGCCAGAGAGAGACCTTTAGCTCTTCAATCTCAAAAGGGTGTCATGGATATCCCTCTGCCTCTTAGTAAATTGGCTATGCATCTGGTTAATCACGACGACAAGGACAAGAAATATGTAGTTCTAGTAGCAACCGGAAGTTTCAATCCTCCTACTTACATGCATTTACGAATGTTGGAACTGGCGAGAGACGCATTGAATTCTGAAGGCTTTTGTGTGATTGGAGGTTATATTTCACCTGTTAATGGTGCATACAACAAGAGCGGACTTATATCTGCTGAACATCGTATACAGTTGTGTCATCTAGCCTGCAAAAGTTCAGAGTTTGTAATGGTTGATCCGTGGGAGGCAAGACAAAGTACCTTCCAACGAAGTTTAACAGTACTGTCTAGAGTCAAGGGTTTCTTGTCTGAGTCTGGGCTGATACCCAGTGAATCCCTGAAGTGCATGCTTGTTTGTGGTTCTGATCTACTCCACTCTTTTAGCATTCCTGGAGTTTGGATTCCAGGCCAGGTCAGGGGCATATGTAGAGATTATGGTGTGGTTTGCATTCGCAGGGAGGGACAAGATGTTGACAAGATAATGTCAAATGATGATATTTTGAGGGAGAATAGGGGTAACATAAGAACTGTGGATGAGCTTGTACCAAACCAAATAAGTTCAACAAGAGTAAGGTTGTTTCCCTTCAAATCTTGTACCAGTGATGGCCACTGTTTCAAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

248

Amino Acids

27.7

Weight (kDa)

8.97

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	51 - 232	1.4e-15	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	310
AciI	CCGC	1 cut(s)	285
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	2 cut(s)	246, 482
AfaI	GTAC	4 cut(s)	382, 405, 666, 718
AfiI	CCNNNNNNNGG	2 cut(s)	266, 538
AgsI	TTSAA	6 cut(s)	50, 166, 220, 684, 709, 739
AjnI	CCWGG	3 cut(s)	511, 526, 531
AluBI	AGCT	2 cut(s)	44, 661
AluI	AGCT	2 cut(s)	44, 661
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	28, 204
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	3 cut(s)	24, 529, 727
ApoI	RAATTY	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	19
BccI	CCATC	1 cut(s)	719
BciT130I	CCWGG	3 cut(s)	513, 528, 533
BcoDI	GTCTC	2 cut(s)	28, 204
BfaI	CTAG	3 cut(s)	146, 326, 411
BmcAI	AGTACT	1 cut(s)	405
Bme1390I	CCNGG	3 cut(s)	513, 528, 533
BmrFI	CCNGG	3 cut(s)	513, 528, 533
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	534
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 538
Bse1I	ACTGG	3 cut(s)	207, 450, 720
BseBI	CCWGG	3 cut(s)	513, 528, 533
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	2 cut(s)	266, 538
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	3 cut(s)	207, 450, 720
BshFI	GGCC	3 cut(s)	26, 531, 729
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	597
BslI	CCNNNNNNNGG	2 cut(s)	266, 538
BsmAI	GTCTC	2 cut(s)	28, 204
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	597
BsmI	GAATGC	2 cut(s)	507, 570
BsnI	GGCC	3 cut(s)	26, 531, 729
Bso31I	GGTCTC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	358, 487
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	3 cut(s)	26, 531, 729
BspCNI	CTCAG	1 cut(s)	424
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	207, 450, 720
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	2 cut(s)	358, 487
BssNAI	GTATAC	1 cut(s)	311
Bst1107I	GTATAC	1 cut(s)	311
Bst2UI	CCWGG	3 cut(s)	513, 528, 533
Bst4CI	ACNGT	5 cut(s)	315, 403, 408, 652, 734
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	331, 470
BstDEI	CTNAG	2 cut(s)	86, 432
BstDSI	CCRYGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	661
BstKTI	GATC	2 cut(s)	361, 490
BstMAI	GTCTC	2 cut(s)	28, 204
BstMBI	GATC	2 cut(s)	358, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 212
BstNI	CCWGG	3 cut(s)	513, 528, 533
BstNSI	RCATGY	2 cut(s)	184, 472
BstSCI	CCNGG	3 cut(s)	511, 526, 531
BstZ17I	GTATAC	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	26, 531, 729
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	3 cut(s)	457, 727, 730
Cac8I	GCNNGC	2 cut(s)	331, 470
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	4 cut(s)	381, 404, 665, 717
CviAII	CATG	3 cut(s)	67, 181, 469
CviJI	RGCY	9 cut(s)	26, 44, 98, 231, 329, 442, 531, 661, 729
CviKI_1	RGCY	9 cut(s)	26, 44, 98, 231, 329, 442, 531, 661, 729
CviQI	GTAC	4 cut(s)	381, 404, 665, 717
DdeI	CTNAG	2 cut(s)	86, 432
DpnI	GATC	2 cut(s)	360, 489
DpnII	GATC	2 cut(s)	358, 487
EaeI	YGGCCR	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	73
Eco57I	CTGAAG	2 cut(s)	246, 482
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	3 cut(s)	511, 526, 531
EcoRV	GATATC	1 cut(s)	73
EcoT22I	ATGCAT	2 cut(s)	105, 186
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	3 cut(s)	70, 184, 472
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	1 cut(s)	597
FatI	CATG	3 cut(s)	66, 180, 468
FauNDI	CATATG	1 cut(s)	545
FblI	GTMKAC	1 cut(s)	310
FokI	GGATG	1 cut(s)	668
FspBI	CTAG	3 cut(s)	146, 326, 411
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	3 cut(s)	26, 531, 729
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	3 cut(s)	70, 184, 472
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	4 cut(s)	414, 434, 455, 523
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	2 cut(s)	311, 595
Hpy188I	TCNGA	4 cut(s)	226, 343, 433, 487
Hpy188III	TCNNGA	2 cut(s)	116, 411
Hpy8I	GTNNAC	2 cut(s)	311, 595
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	221, 394, 715
HpyCH4III	ACNGT	5 cut(s)	315, 403, 408, 652, 734
HpyCH4V	TGCA	6 cut(s)	103, 184, 272, 333, 468, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 212
HpyF3I	CTNAG	2 cut(s)	86, 432
Hsp92II	CATG	3 cut(s)	70, 184, 472
Kzo9I	GATC	2 cut(s)	358, 487
LguI	GCTCTTC	1 cut(s)	51
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	3 cut(s)	146, 326, 411
MaeIII	GTNAC	1 cut(s)	638
MalI	GATC	2 cut(s)	360, 489
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	2 cut(s)	358, 487
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	2 cut(s)	92, 220
MluNI	TGGCCA	1 cut(s)	729
MlyI	GAGTC	2 cut(s)	423, 443
MmeI	TCCRAC	2 cut(s)	177, 412
MnlI	CCTC	7 cut(s)	87, 93, 180, 239, 361, 574, 618
Mox20I	TGGCCA	1 cut(s)	729
Mph1103I	ATGCAT	2 cut(s)	105, 186
MscI	TGGCCA	1 cut(s)	729
MseI	TTAA	3 cut(s)	111, 264, 398
Msp20I	TGGCCA	1 cut(s)	729
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	3 cut(s)	513, 528, 533
Mva1269I	GAATGC	2 cut(s)	507, 570
MvaI	CCWGG	3 cut(s)	513, 528, 533
MwoI	GCNNNNNNNGC	2 cut(s)	23, 212
NdeI	CATATG	1 cut(s)	545
NdeII	GATC	2 cut(s)	358, 487
NlaIII	CATG	3 cut(s)	70, 184, 472
NsiI	ATGCAT	2 cut(s)	105, 186
NspI	RCATGY	2 cut(s)	184, 472
PaeI	GCATGC	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	2 cut(s)	507, 570
PfeI	GAWTC	2 cut(s)	455, 523
PfoI	TCCNGGA	1 cut(s)	511
PleI	GAGTC	2 cut(s)	422, 442
PpsI	GAGTC	2 cut(s)	422, 442
Psp6I	CCWGG	3 cut(s)	511, 526, 531
PspGI	CCWGG	3 cut(s)	511, 526, 531
PsrI	GAACNNNNNNTAC	2 cut(s)	294, 326
RsaI	GTAC	4 cut(s)	382, 405, 666, 718
RsaNI	GTAC	4 cut(s)	381, 404, 665, 717
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	111, 264, 398
Sau3AI	GATC	2 cut(s)	358, 487
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	2 cut(s)	423, 443
ScrFI	CCNGG	3 cut(s)	513, 528, 533
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	8 cut(s)	40, 46, 250, 262, 386, 537, 663, 698
SfaNI	GCATC	1 cut(s)	112
SphI	GCATGC	1 cut(s)	472
Sse9I	AATT	2 cut(s)	92, 220
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	3 cut(s)	146, 326, 411
StyD4I	CCNGG	3 cut(s)	511, 526, 531
TaaI	ACNGT	5 cut(s)	315, 403, 408, 652, 734
TasI	AATT	2 cut(s)	92, 220
TatI	WGTACW	1 cut(s)	403
TfiI	GAWTC	2 cut(s)	455, 523
Tru1I	TTAA	3 cut(s)	111, 264, 398
Tru9I	TTAA	3 cut(s)	111, 264, 398
TscAI	CASTG	3 cut(s)	457, 727, 737
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	3 cut(s)	457, 727, 737
XapI	RAATTY	1 cut(s)	220
XbaI	TCTAGA	1 cut(s)	410
XceI	RCATGY	2 cut(s)	184, 472
XmiI	GTMKAC	1 cut(s)	310
XspI	CTAG	3 cut(s)	146, 326, 411
ZrmI	AGTACT	1 cut(s)	405
Zsp2I	ATGCAT	2 cut(s)	105, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.