Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Forward (+)

14034033 .. 14036483

Gene Structure 2451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG136900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGATCTCATTTTTAAAGTTAAGAACGGAATTGCAGAACTGGCGAGAGACGCATTGAATTCTGAAGGCTTTTGTGTGATTGGAGGTTATATTTCACCTGTTAATGGTGCATACAACAAGAGGGGACTTATATCTGCTGAACATCGTATACAGTTGTGTCATCTAGCCTGCAAAAGTTCAGAGTTTGTAATGGTTGATCCGTGGGAGGCAAGACAAAGTACCTTCCAACGAAGTTTAACAGTACTGTCTAGAGTCAAGGGTTTCTTGTCTGAGTCTGGGCTGATACCCAGTGAATCCCTGAAGTGCATGCTTGTTTGTGGTTCTGATCTACTCCACTCTTTTAGCATTCCTGGAGTTTGGATTCCAGGCCAGGTCAGGGGCATATGTAGAGATTATGGTGTGGTTTGCATTCGCAGGGAGGGACAAGATGTTGACAAGATAATGTCAAATGATGATATTTTGAGGGAGAATAGGGGTAACATAAGAACTGTGGATGAGCTTGTACCAAACCAAATAAGTTCAACAAAAGTAAGGGATTGCATCTCAAGAGGATTGTCGATAAAATATCTGACTGCAGATGAAGTAATTGATTATATTAAAGAGCAGCATCTCTACTTGAACTCAAATGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

211

Amino Acids

23.6

Weight (kDa)

6.88

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	12 - 178	4.6e-08	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	148
AclWI	GGATC	2 cut(s)	12, 191
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	2 cut(s)	84, 320
AfaI	GTAC	3 cut(s)	220, 243, 504
AfiI	CCNNNNNNNGG	2 cut(s)	104, 376
AgsI	TTSAA	3 cut(s)	58, 522, 619
AjnI	CCWGG	3 cut(s)	349, 364, 369
AluBI	AGCT	1 cut(s)	499
AluI	AGCT	1 cut(s)	499
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	12, 191
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	604
ApoI	RAATTY	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	616
BciT130I	CCWGG	3 cut(s)	351, 366, 371
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	2 cut(s)	164, 249
BfmI	CTRYAG	1 cut(s)	573
BisI	GCNGC	1 cut(s)	605
BlsI	GCNGC	1 cut(s)	606
BmcAI	AGTACT	1 cut(s)	243
Bme1390I	CCNGG	3 cut(s)	351, 366, 371
BmrFI	CCNGG	3 cut(s)	351, 366, 371
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	549, 616
BmuI	ACTGGG	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 376
Bse1I	ACTGG	2 cut(s)	45, 288
BseBI	CCWGG	3 cut(s)	351, 366, 371
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	2 cut(s)	104, 376
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	45, 288
BseXI	GCAGC	1 cut(s)	616
BshFI	GGCC	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	138, 435
BslI	CCNNNNNNNGG	2 cut(s)	104, 376
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	2 cut(s)	138, 435
BsmI	GAATGC	2 cut(s)	345, 408
BsnI	GGCC	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	4, 196, 325
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	577
BspPI	GGATC	2 cut(s)	12, 191
BsrI	ACTGG	2 cut(s)	45, 288
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	3 cut(s)	4, 196, 325
BssNAI	GTATAC	1 cut(s)	149
Bst1107I	GTATAC	1 cut(s)	149
Bst2UI	CCWGG	3 cut(s)	351, 366, 371
Bst4CI	ACNGT	4 cut(s)	153, 241, 246, 490
BstC8I	GCNNGC	2 cut(s)	169, 308
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	3 cut(s)	7, 199, 328
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	4, 196, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstNI	CCWGG	3 cut(s)	351, 366, 371
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	3 cut(s)	349, 364, 369
BstSFI	CTRYAG	1 cut(s)	573
BstV1I	GCAGC	1 cut(s)	616
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	499
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	169, 308
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	219, 242, 503
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	5 cut(s)	69, 167, 280, 369, 499
CviKI_1	RGCY	5 cut(s)	69, 167, 280, 369, 499
CviQI	GTAC	3 cut(s)	219, 242, 503
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	3 cut(s)	6, 198, 327
DpnII	GATC	3 cut(s)	4, 196, 325
DraI	TTTAAA	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	84, 320
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	3 cut(s)	349, 364, 369
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	310
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	2 cut(s)	138, 435
FatI	CATG	1 cut(s)	306
FauNDI	CATATG	1 cut(s)	383
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	605
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	1 cut(s)	605
FspBI	CTAG	2 cut(s)	164, 249
GluI	GCNGC	1 cut(s)	605
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	369
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	310
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	4 cut(s)	252, 272, 293, 361
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	2 cut(s)	149, 433
Hpy188I	TCNGA	5 cut(s)	64, 181, 271, 325, 570
Hpy188III	TCNNGA	2 cut(s)	249, 546
Hpy8I	GTNNAC	2 cut(s)	149, 433
HpyAV	CCTTC	2 cut(s)	59, 232
HpyCH4III	ACNGT	4 cut(s)	153, 241, 246, 490
HpyCH4V	TGCA	7 cut(s)	35, 110, 171, 306, 408, 540, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	4, 196, 325
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	2 cut(s)	549, 616
MaeI	CTAG	2 cut(s)	164, 249
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	3 cut(s)	6, 198, 327
MboI	GATC	3 cut(s)	4, 196, 325
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	3 cut(s)	30, 58, 585
MlyI	GAGTC	2 cut(s)	261, 281
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	6 cut(s)	77, 114, 199, 412, 456, 542
MseI	TTAA	5 cut(s)	15, 21, 102, 236, 597
MspR9I	CCNGG	3 cut(s)	351, 366, 371
Mva1269I	GAATGC	2 cut(s)	345, 408
MvaI	CCWGG	3 cut(s)	351, 366, 371
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NdeI	CATATG	1 cut(s)	383
NdeII	GATC	3 cut(s)	4, 196, 325
NlaIII	CATG	1 cut(s)	310
NspI	RCATGY	1 cut(s)	310
PaeI	GCATGC	1 cut(s)	310
PctI	GAATGC	2 cut(s)	345, 408
PfeI	GAWTC	2 cut(s)	293, 361
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	606
PleI	GAGTC	2 cut(s)	260, 280
PpsI	GAGTC	2 cut(s)	260, 280
Psp6I	CCWGG	3 cut(s)	349, 364, 369
PspGI	CCWGG	3 cut(s)	349, 364, 369
PsrI	GAACNNNNNNTAC	2 cut(s)	132, 164
PstI	CTGCAG	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	3 cut(s)	220, 243, 504
RsaNI	GTAC	3 cut(s)	219, 242, 503
SaqAI	TTAA	5 cut(s)	15, 21, 102, 236, 597
SatI	GCNGC	1 cut(s)	605
Sau3AI	GATC	3 cut(s)	4, 196, 325
ScaI	AGTACT	1 cut(s)	243
SchI	GAGTC	2 cut(s)	261, 281
ScrFI	CCNGG	3 cut(s)	351, 366, 371
SetI	ASST	5 cut(s)	88, 100, 224, 375, 501
SfaNI	GCATC	2 cut(s)	549, 616
SfcI	CTRYAG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
SphI	GCATGC	1 cut(s)	310
Sse9I	AATT	3 cut(s)	30, 58, 585
SspMI	CTAG	2 cut(s)	164, 249
StyD4I	CCNGG	3 cut(s)	349, 364, 369
TaaI	ACNGT	4 cut(s)	153, 241, 246, 490
TaqI	TCGA	1 cut(s)	557
TasI	AATT	3 cut(s)	30, 58, 585
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	2 cut(s)	293, 361
Tru1I	TTAA	5 cut(s)	15, 21, 102, 236, 597
Tru9I	TTAA	5 cut(s)	15, 21, 102, 236, 597
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	1 cut(s)	604
TspDTI	ATGAA	1 cut(s)	594
TspGWI	ACGGA	2 cut(s)	42, 189
TspRI	CASTG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	58
XbaI	TCTAGA	1 cut(s)	248
XceI	RCATGY	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	2 cut(s)	164, 249
ZrmI	AGTACT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.