Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Reverse (-)

55663103 .. 55668204

Gene Structure 5102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG471900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCCGACGCCTTTGGTGGTGAATTGGCGCGAAAATGAGGTGGGGTTGGTTCCTCAATCTCAAACGGGTGTCATGGATATCCCTCTGCCTCTTAGTAAATTGGCTATGCATTTGGTTAATCACGACGACAAGGACAAGAAATATGTAGTTCTAGTAGCACCCGGAAGTTTCAATCCTCCTACTTACATGCATTTACGAATGTTGGAACTGGCGAGAGACGCATTGAATTCTGAAGGCTTTTGTGTGATTGGAGGTTATATTTCACCTGTTAATGATGCATACAACAAGAGGGGACTTATATCTGCTGAACATCGTATACAGTTGTGTCATCTAGCCTGCAAAAGTTCAGAGTTTGTAATGGTTGATCCATGGGAGGCAAGACAAAGTACCTTCCAACGATGTTTAACAGTACTGTCTAGAATCAAGGGTTTCTTGTCTGAGTCTGGGCTGATACCCGGTGAATCCCTGAAGTGCGTGCTTGTCTGTGGTTCTGATCTACTCCACTCTTTTAGCATTCCTGGAGTTTGGATTCCAGACCAGGTCAGGAGCATATGTAGAGATTATGGTGTGGTTTGCATTTGCAGGGAGGGACAAGATGTTGACAAGATAATGTCAAATGATGATATTTTGAGGGAGAATAGGGGTAACATAAGAATTGTGGATGAGCTTGTACCAAACCAAATAAGCTCGACAAGAGTAAGGACTTCCTATTTCTGTACTTCAAAAAGCTGCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

245

Amino Acids

27.36

Weight (kDa)

6.58

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	52 - 235	5.9e-17	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	316
AccII	CGCG	1 cut(s)	30
AciI	CCGC	1 cut(s)	732
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	2 cut(s)	252, 488
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	4 cut(s)	388, 411, 672, 718
AgsI	TTSAA	3 cut(s)	172, 226, 723
AjnI	CCWGG	2 cut(s)	517, 537
AluBI	AGCT	3 cut(s)	667, 687, 729
AluI	AGCT	3 cut(s)	667, 687, 729
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	729
ApoI	RAATTY	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	30
AsuC2I	CCSGG	2 cut(s)	162, 456
AsuHPI	GGTGA	3 cut(s)	31, 255, 470
BbvI	GCAGC	1 cut(s)	716
BciT130I	CCWGG	2 cut(s)	519, 539
BcnI	CCSGG	2 cut(s)	162, 456
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	3 cut(s)	152, 332, 417
BisI	GCNGC	2 cut(s)	730, 733
BlsI	GCNGC	2 cut(s)	731, 734
BmcAI	AGTACT	1 cut(s)	411
Bme1390I	CCNGG	4 cut(s)	162, 456, 519, 539
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	4 cut(s)	162, 456, 519, 539
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	540
BpuMI	CCSGG	2 cut(s)	162, 456
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	368
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bse1I	ACTGG	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	519, 539
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	667
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	716
Bsh1236I	CGCG	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	162, 456
BslFI	GGGAC	2 cut(s)	306, 603
BsmAI	GTCTC	1 cut(s)	210
BsmBI	CGTCTC	1 cut(s)	210
BsmFI	GGGAC	2 cut(s)	306, 603
BsmI	GAATGC	1 cut(s)	513
Bsp143I	GATC	2 cut(s)	364, 493
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	1 cut(s)	732
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	2 cut(s)	364, 493
BssNAI	GTATAC	1 cut(s)	317
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	368
Bst1107I	GTATAC	1 cut(s)	317
Bst2UI	CCWGG	2 cut(s)	519, 539
Bst4CI	ACNGT	3 cut(s)	321, 409, 414
BstACI	GRCGYC	1 cut(s)	8
BstC8I	GCNNGC	2 cut(s)	337, 476
BstDEI	CTNAG	2 cut(s)	92, 438
BstDSI	CCRYGG	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	667
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	367, 496
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	364, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	2 cut(s)	519, 539
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	4 cut(s)	160, 454, 517, 537
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	716
BstZ17I	GTATAC	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	667
Cac8I	GCNNGC	2 cut(s)	337, 476
CfoI	GCGC	1 cut(s)	30
CseI	GACGC	2 cut(s)	16, 227
CsiI	ACCWGGT	1 cut(s)	537
Csp6I	GTAC	4 cut(s)	387, 410, 671, 717
CviAII	CATG	3 cut(s)	73, 187, 369
CviJI	RGCY	8 cut(s)	104, 237, 335, 448, 667, 687, 729, 735
CviKI_1	RGCY	8 cut(s)	104, 237, 335, 448, 667, 687, 729, 735
CviQI	GTAC	4 cut(s)	387, 410, 671, 717
DdeI	CTNAG	2 cut(s)	92, 438
DpnI	GATC	2 cut(s)	366, 495
DpnII	GATC	2 cut(s)	364, 493
Eco130I	CCWWGG	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	252, 488
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	517, 537
EcoRV	GATATC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	368
EcoT22I	ATGCAT	3 cut(s)	111, 192, 280
ErhI	CCWWGG	1 cut(s)	368
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	3 cut(s)	76, 190, 372
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	2 cut(s)	306, 603
FatI	CATG	3 cut(s)	72, 186, 368
FauNDI	CATATG	1 cut(s)	551
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	730, 733
FokI	GGATG	1 cut(s)	674
Fsp4HI	GCNGC	2 cut(s)	730, 733
FspBI	CTAG	3 cut(s)	152, 332, 417
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	730, 733
GsuI	CTGGAG	1 cut(s)	540
HapII	CCGG	2 cut(s)	162, 456
HgaI	GACGC	2 cut(s)	16, 227
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	76, 190, 372
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HinfI	GANTC	4 cut(s)	420, 440, 461, 529
HpaII	CCGG	2 cut(s)	162, 456
HphI	GGTGA	3 cut(s)	31, 255, 470
Hpy166II	GTNNAC	2 cut(s)	317, 601
Hpy188I	TCNGA	4 cut(s)	232, 349, 439, 493
Hpy188III	TCNNGA	4 cut(s)	122, 417, 533, 544
Hpy8I	GTNNAC	2 cut(s)	317, 601
Hpy99I	CGWCG	2 cut(s)	10, 128
HpyAV	CCTTC	2 cut(s)	227, 400
HpyCH4III	ACNGT	3 cut(s)	321, 409, 414
HpyCH4V	TGCA	6 cut(s)	109, 190, 278, 339, 576, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	2 cut(s)	92, 438
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	76, 190, 372
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	364, 493
LmnI	GCTCC	1 cut(s)	546
Lsp1109I	GCAGC	1 cut(s)	716
LweI	GCATC	1 cut(s)	265
MabI	ACCWGGT	1 cut(s)	537
MaeI	CTAG	3 cut(s)	152, 332, 417
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	2 cut(s)	366, 495
MboI	GATC	2 cut(s)	364, 493
MluCI	AATT	4 cut(s)	22, 98, 226, 654
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	2 cut(s)	183, 418
Mph1103I	ATGCAT	3 cut(s)	111, 192, 280
MseI	TTAA	3 cut(s)	117, 270, 404
MspI	CCGG	2 cut(s)	162, 456
MspR9I	CCNGG	4 cut(s)	162, 456, 519, 539
Mva1269I	GAATGC	1 cut(s)	513
MvaI	CCWGG	2 cut(s)	519, 539
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	2 cut(s)	162, 456
NcoI	CCATGG	1 cut(s)	368
NdeI	CATATG	1 cut(s)	551
NdeII	GATC	2 cut(s)	364, 493
NlaIII	CATG	3 cut(s)	76, 190, 372
NlaIV	GGNNCC	1 cut(s)	51
NsiI	ATGCAT	3 cut(s)	111, 192, 280
NspI	RCATGY	1 cut(s)	190
PctI	GAATGC	1 cut(s)	513
PfeI	GAWTC	3 cut(s)	420, 461, 529
PflFI	GACNNNGTC	1 cut(s)	539
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	731, 734
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Psp6I	CCWGG	2 cut(s)	517, 537
PspGI	CCWGG	2 cut(s)	517, 537
PspN4I	GGNNCC	1 cut(s)	51
PsrI	GAACNNNNNNTAC	2 cut(s)	300, 332
PsyI	GACNNNGTC	1 cut(s)	539
RsaI	GTAC	4 cut(s)	388, 411, 672, 718
RsaNI	GTAC	4 cut(s)	387, 410, 671, 717
SaqAI	TTAA	3 cut(s)	117, 270, 404
SatI	GCNGC	2 cut(s)	730, 733
Sau3AI	GATC	2 cut(s)	364, 493
ScaI	AGTACT	1 cut(s)	411
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	4 cut(s)	162, 456, 519, 539
SetI	ASST	8 cut(s)	42, 256, 268, 392, 543, 669, 689, 731
SexAI	ACCWGGT	1 cut(s)	537
SfaNI	GCATC	1 cut(s)	265
Sse9I	AATT	4 cut(s)	22, 98, 226, 654
SsiI	CCGC	1 cut(s)	732
SspMI	CTAG	3 cut(s)	152, 332, 417
StyD4I	CCNGG	4 cut(s)	160, 454, 517, 537
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	3 cut(s)	321, 409, 414
TaqI	TCGA	1 cut(s)	689
TasI	AATT	4 cut(s)	22, 98, 226, 654
TatI	WGTACW	2 cut(s)	409, 716
TauI	GCSGC	1 cut(s)	735
TfiI	GAWTC	3 cut(s)	420, 461, 529
Tru1I	TTAA	3 cut(s)	117, 270, 404
Tru9I	TTAA	3 cut(s)	117, 270, 404
TseI	GCWGC	1 cut(s)	729
Tth111I	GACNNNGTC	1 cut(s)	539
XapI	RAATTY	1 cut(s)	226
XbaI	TCTAGA	1 cut(s)	416
XceI	RCATGY	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	316
XspI	CTAG	3 cut(s)	152, 332, 417
ZrmI	AGTACT	1 cut(s)	411
Zsp2I	ATGCAT	3 cut(s)	111, 192, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.