Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Forward (+)

4000488 .. 4008884

Gene Structure 8397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0045700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

ATGTCGCCGTCGTCGTCGTCGTCTTCTTCCAAGTGCTGCTACAATTCCGAGTGCGGCGAATTGAAGCCGGAGCACCCGAGGAAGGCCTGGCGCCTCCGCACCGGAGACTTCGCCGAGCTCTGCGATCGATGCGCTCTCATTTATGAAGAAGGAAGATTTTGTGAGACTTTTCATGTGAAAGCTTCTGGGTGGAGGTGTTGTGAGTCGTGTGGAAAGCGGGTTCATTGTGGATGTATCGTTTCAGCTCAAGCCTTTACCTTGTTGGATCCTGGAGGGATTGAGTGCGTAACATGTGCAAGGAAACATATTGTTTTGACATCAAATCCAGCATGGGCACCAACTTTGTTCTTTCATTCACCTTTATCTGATAGACTGAAGGACATGTCTGGCAAAAATTGGACTCAGTTGGCCGGATCTGGTCCTGTACCATGGAGGCAAGCACCCAGTTTATTCAATTCTTCAATTTCTTCATCTGAGTTGCATGGGAGGTTGCCATATGATGTTGATGGTTCAATGGGAATTAATAAACTTAATGCCGGTGAAAGAGTATCAGTCCATCCCTTGGAAAAGAAGAAAGCCGAGGATTTCTCTGAAAGATTAATGAAAGTGAACCTTGCAATTGGCACACCAGTTAGTTTTGAAAATGGGAATTCAGGAAATAAATGCATGGAGCAAAGCAGTTCATGTTTAAATATATCTCAACAGCCTGCCTCTTTGAAGGAGGAACCATCTACTCCACAGTTTGTCCTGTCTGTACCTTATGTATCAGCAAGTGAAACAAATGGTCAAGTGGTGGTTACGGGAACCAATTTGCGGCCTGCCCTTCCTATGGTAAAGCAGTTCAATGGTACTTTACATAATGGAGTTGAATTGTCTGGTGATACTCAGATCCGCAATGCAAGGCCTCGAGCAGATGCACGGGGAAGAAGTCCATTACTTCCACGGTACTGGCCTAGATTTACTGATCAAGAGCTACAGCAAATGTCTGGAGATTCAAATTCTGTCATTACTCCATTATTTGAGAAAATGCTGAGCGCAAGTGATGCTGGGAGGATTGGACGTCTGGTGTTGCCAAAAAAGTGTGCAGAGGCCTACTTCCCACCGATTTCTCAGCCTGAAGGATTACCGCTTAAAGTCCAAGATTCGAAGGGCAAGGAATGGGTATTTCAGTTTCGCTTCTGGCCCAACAATAATAGCAGAATGTATGTTTTGGAGGGGGTTACTCCTTGCATACAATCCATGCAATTGCAAGCAGGCGACATAGTGACATTCAGTCGATTAGAGCCCGGAGGGAAATTGGTTATGGGGTGCAGAAGGGCTTCAACTGCCCCATCTGATCAGGAAAATGATACAAACAAGATGGGGAATGGAGTTTCAGCCCATGTAGATGCTGAATTGGCAGATCCTAGTACATTTCCCAAAGGTGATAAGTCAAGTTACATATCAAAAGAAGTAGAGGGAGCTAAATCTTTGATCTCTCGAAAAAGGAAAAATAGCAACTTGGGGTCTAAGAGTAAGCGCCTGAGAATTGAAAAGGAAGATCTGATAGAGCTGAAGATAACATGGGAAGAAGCTCAAGGACTGCTTCGCCCTCCTCCTAACCATGTTCCTACTGTTGTGGTGATTGAAGGTTTTGAGTTTGAGGAATATGAGGATGGTCCAATTCTTGGGAAGCCGACACTTTATGCTACAGGAAGTAAAGGTGAGAACATTCAATGGGCACAATGTGAAGCCTGTTGTAAGTGGCGCAAATTGCCTGTTAATGCCCTTCTTCCCTCAAAGTGGACTTGCTCAGATAACTCATGGGACCCTGATAGGTCATTGTGTTCAGCAGCTCAAGAGTTGACAACAGAACAGCTTGAAGATCTGCTTCCCCGTTGTAATTCAGTTGCTCCTAAGAAAATAAGGGCTGCTAAACAGGACCCAGATAACATTGAAGCTTTGGAGGGGCTTGATACACTTGCAAACCTAGCTATCTTGGGAGAAGGTGAGTCACTCCCAGCATCAGCTCAGGCCACAACAAAGCACCCCCGACATAGGCCCGGATGCTCATGCATTGTCTGCATCCAGCCCCCTAGTGGGAAGGGTCCTAAACACAAGCAAACGTGCATCTGCAATGTATGCTCAACAGTGAAGCGCCGGTTCCGTACGTTAATGATGCGGCGCGAGAAGAATAAGTCGGAGAAAGAAGCAGAAACTACACGCAAAAAGCAGCAGCAACAGCAATTACTAGACGATGAGACCCTCCTATGTGGTAACGCAGGAAGTAGCAGTCCAAACAACAAAGTGGAGGTCCTTGAGCTTTCTGATGATGACTTTAACAGGACGAAATCTCCAACTCCACCTTATAAAGGCCAAATTGATCTGAATATCCAGCCAGAGCGGGAGGAAGATCTATCACCTGGCTCAGATTCTGGTGGCGTGATAAAGTTGCTCCAAGATGCCACAGAAAGGTATCTCAGGCAGCAGAGGCAGAGTTTGTCAACCTCTGGTGGTGGTGAAAGATCAATGGGCAACAAGTCGCAGCGAGCTGGAGGTGAAGCAGGGGGAGAACCACTTGGCAACATTGCAATTCTTGGGAATAGCAATCATGATAGTGGCAATGATCATCCTGCAACTTTATCTGTCAAAGCTTCAGCTTCCATGACAGCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

885

Amino Acids

96.97

Weight (kDa)

8.18

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_VAL1_N	PF25813	56 - 103	5e-22	VAL1-like, N-terminal zinc finger domain
B3	PF02362	340 - 440	2.7e-16	B3 DNA binding domain
zf-CW	PF07496	572 - 614	9.4e-10	CW-type Zinc Finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2349
AatII	GACGTC	1 cut(s)	1063
AccB1I	GGYRCC	2 cut(s)	90, 334
AccB7I	CCANNNNNTGG	2 cut(s)	562, 1667
AccBSI	CCGCTC	1 cut(s)	2383
AccII	CGCG	1 cut(s)	2166
AciI	CCGC	8 cut(s)	54, 97, 217, 814, 892, 1127, 2161, 2383
AclWI	GGATC	5 cut(s)	260, 273, 421, 883, 1397
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	2 cut(s)	649, 997
AcuI	CTGAAG	4 cut(s)	395, 1137, 1574, 2619
AcyI	GRCGYC	2 cut(s)	91, 1060
AdeI	CACNNNGTG	1 cut(s)	1727
AfaI	GTAC	6 cut(s)	426, 756, 850, 947, 1411, 2149
AflIII	ACRYGT	2 cut(s)	290, 381
AhdI	GACNNNNNGTC	1 cut(s)	1272
AjnI	CCWGG	3 cut(s)	86, 268, 2401
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
Alw21I	GWGCWC	2 cut(s)	75, 120
Alw26I	GTCTC	3 cut(s)	99, 158, 2234
AlwI	GGATC	5 cut(s)	260, 273, 421, 883, 1397
AlwNI	CAGNNNCTG	1 cut(s)	2414
Ama87I	CYCGRG	2 cut(s)	76, 906
ApeKI	GCWGC	7 cut(s)	36, 1832, 1910, 2212, 2215, 2464, 2524
ApoI	RAATTY	2 cut(s)	649, 997
ArsI	GACNNNNNNTTYG	2 cut(s)	2277, 2309
AseI	ATTAAT	2 cut(s)	522, 599
Asp700I	GAANNNNTTC	1 cut(s)	1318
AspLEI	GCGC	7 cut(s)	93, 134, 1037, 1521, 1749, 2139, 2166
AspS9I	GGNCC	8 cut(s)	419, 1182, 1658, 1807, 1921, 2040, 2087, 2293
AsuC2I	CCSGG	2 cut(s)	1287, 2043
AsuII	TTCGAA	1 cut(s)	1145
AvaI	CYCGRG	2 cut(s)	76, 906
AvaII	GGWCC	6 cut(s)	419, 1658, 1807, 1921, 2087, 2293
BaeGI	GKGCMC	2 cut(s)	337, 1723
BamHI	GGATCC	1 cut(s)	265
BanI	GGYRCC	2 cut(s)	90, 334
BanII	GRGCYC	2 cut(s)	120, 1287
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	75, 120
BbvI	GCAGC	7 cut(s)	23, 1844, 1897, 2224, 2227, 2476, 2536
BccI	CCATC	6 cut(s)	500, 564, 736, 1339, 1354, 1649
BciT130I	CCWGG	3 cut(s)	88, 270, 2403
BclI	TGATCA	3 cut(s)	964, 1336, 2605
BcnI	CCSGG	2 cut(s)	1287, 2043
BcoDI	GTCTC	3 cut(s)	99, 158, 2234
BfaI	CTAG	5 cut(s)	954, 1407, 1970, 2076, 2231
BfmI	CTRYAG	2 cut(s)	974, 1689
BfoI	RGCGCY	3 cut(s)	94, 1522, 2140
BglII	AGATCT	3 cut(s)	1540, 1864, 2392
BlpI	GCTNAGC	1 cut(s)	1031
Bme1390I	CCNGG	5 cut(s)	88, 270, 1287, 2043, 2403
Bme18I	GGWCC	6 cut(s)	419, 1658, 1807, 1921, 2087, 2293
BmeRI	GACNNNNNGTC	1 cut(s)	1272
BmeT110I	CYCGRG	2 cut(s)	76, 906
BmgT120I	GGNCC	8 cut(s)	419, 1182, 1658, 1807, 1921, 2040, 2087, 2293
BmrFI	CCNGG	5 cut(s)	88, 270, 1287, 2043, 2403
BmrI	ACTGGG	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpmI	CTGGAG	3 cut(s)	291, 1008, 2553
Bpu10I	CCTNAGC	1 cut(s)	2010
Bpu1102I	GCTNAGC	1 cut(s)	1031
Bpu14I	TTCGAA	1 cut(s)	1145
BpuEI	CTTGAG	4 cut(s)	231, 1560, 1821, 2318
BpuMI	CCSGG	2 cut(s)	1287, 2043
Bsa29I	ATCGAT	1 cut(s)	127
BsaAI	YACGTR	1 cut(s)	2655
BsaHI	GRCGYC	2 cut(s)	91, 1060
BsaI	GGTCTC	1 cut(s)	2234
BsaJI	CCNNGG	5 cut(s)	77, 428, 561, 579, 941
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 2317, 2347
Bse118I	RCCGGY	2 cut(s)	536, 2139
Bse1I	ACTGG	3 cut(s)	444, 629, 953
Bse3DI	GCAATG	4 cut(s)	901, 2122, 2565, 2608
BseBI	CCWGG	3 cut(s)	88, 270, 2403
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	5 cut(s)	77, 428, 561, 579, 941
BseGI	GGATG	6 cut(s)	236, 556, 1660, 2051, 2064, 2608
BseMI	GCAATG	4 cut(s)	901, 2122, 2565, 2608
BseNI	ACTGG	3 cut(s)	444, 629, 953
BseRI	GAGGAG	1 cut(s)	1584
BseSI	GKGCMC	2 cut(s)	337, 1723
BseXI	GCAGC	7 cut(s)	23, 1844, 1897, 2224, 2227, 2476, 2536
BseYI	CCCAGC	2 cut(s)	1046, 1999
BsgI	GTGCAG	2 cut(s)	1104, 1330
Bsh1236I	CGCG	1 cut(s)	2166
Bsh1285I	CGRYCG	1 cut(s)	127
BshNI	GGYRCC	2 cut(s)	90, 334
BshVI	ATCGAT	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	75, 120
BsiHKCI	CYCGRG	2 cut(s)	76, 906
BsiSI	CCGG	7 cut(s)	68, 102, 411, 537, 1287, 2043, 2140
BsiWI	CGTACG	1 cut(s)	2147
BslFI	GGGAC	1 cut(s)	1820
BsmAI	GTCTC	3 cut(s)	99, 158, 2234
BsmFI	GGGAC	1 cut(s)	1820
Bso31I	GGTCTC	1 cut(s)	2234
BsoBI	CYCGRG	2 cut(s)	76, 906
Bsp119I	TTCGAA	1 cut(s)	1145
Bsp1286I	GDGCHC	5 cut(s)	75, 120, 337, 1287, 1723
Bsp1720I	GCTNAGC	1 cut(s)	1031
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	8 cut(s)	54, 97, 217, 814, 892, 1127, 2161, 2383
BspDI	ATCGAT	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	2166
BspHI	TCATGA	1 cut(s)	2590
BspPI	GGATC	5 cut(s)	260, 273, 421, 883, 1397
BspT104I	TTCGAA	1 cut(s)	1145
BspT107I	GGYRCC	2 cut(s)	90, 334
BspTNI	GGTCTC	1 cut(s)	2234
BsrBI	CCGCTC	1 cut(s)	2383
BsrDI	GCAATG	4 cut(s)	901, 2122, 2565, 2608
BsrFI	RCCGGY	2 cut(s)	536, 2139
BsrI	ACTGG	3 cut(s)	444, 629, 953
BssAI	RCCGGY	2 cut(s)	536, 2139
BssECI	CCNNGG	5 cut(s)	77, 428, 561, 579, 941
BssNI	GRCGYC	2 cut(s)	91, 1060
BssT1I	CCWWGG	2 cut(s)	428, 561
Bst2UI	CCWGG	3 cut(s)	88, 270, 2403
Bst4CI	ACNGT	4 cut(s)	741, 945, 1615, 2131
BstACI	GRCGYC	2 cut(s)	91, 1060
BstAPI	GCANNNNNTGC	3 cut(s)	1043, 2061, 2121
BstBAI	YACGTR	1 cut(s)	2655
BstBI	TTCGAA	1 cut(s)	1145
BstC8I	GCNNGC	6 cut(s)	438, 708, 819, 1251, 1255, 2529
BstDSI	CCRYGG	2 cut(s)	428, 941
BstENI	CCTNNNNNAGG	1 cut(s)	2349
BstF5I	GGATG	6 cut(s)	236, 556, 1660, 2051, 2064, 2608
BstFNI	CGCG	1 cut(s)	2166
BstH2I	RGCGCY	3 cut(s)	94, 1522, 2140
BstHHI	GCGC	7 cut(s)	93, 134, 1037, 1521, 1749, 2139, 2166
BstMAI	GTCTC	3 cut(s)	99, 158, 2234
BstMCI	CGRYCG	1 cut(s)	127
BstNI	CCWGG	3 cut(s)	88, 270, 2403
BstNSI	RCATGY	2 cut(s)	294, 385
BstSCI	CCNGG	5 cut(s)	86, 268, 1285, 2041, 2401
BstSFI	CTRYAG	2 cut(s)	974, 1689
BstSLI	GKGCMC	2 cut(s)	337, 1723
BstUI	CGCG	1 cut(s)	2166
BstV1I	GCAGC	7 cut(s)	23, 1844, 1897, 2224, 2227, 2476, 2536
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	7 cut(s)	265, 413, 888, 1402, 1540, 1864, 2392
BstXI	CCANNNNNNTGG	1 cut(s)	948
BstYI	RGATCY	7 cut(s)	265, 413, 888, 1402, 1540, 1864, 2392
Bsu15I	ATCGAT	1 cut(s)	127
BsuTUI	ATCGAT	1 cut(s)	127
BtgI	CCRYGG	2 cut(s)	428, 941
BtsCI	GGATG	6 cut(s)	236, 556, 1660, 2051, 2064, 2608
BtsIMutI	CAGTG	1 cut(s)	2136
Cac8I	GCNNGC	6 cut(s)	438, 708, 819, 1251, 1255, 2529
CaiI	CAGNNNCTG	1 cut(s)	2414
CciI	TCATGA	1 cut(s)	2590
CfoI	GCGC	7 cut(s)	93, 134, 1037, 1521, 1749, 2139, 2166
Cfr10I	RCCGGY	2 cut(s)	536, 2139
Cfr13I	GGNCC	8 cut(s)	419, 1182, 1658, 1807, 1921, 2040, 2087, 2293
ClaI	ATCGAT	1 cut(s)	127
Csp6I	GTAC	6 cut(s)	425, 755, 849, 946, 1410, 2148
CviQI	GTAC	6 cut(s)	425, 755, 849, 946, 1410, 2148
DinI	GGCGCC	1 cut(s)	92
DraI	TTTAAA	1 cut(s)	690
DraIII	CACNNNGTG	1 cut(s)	1727
DriI	GACNNNNNGTC	1 cut(s)	1272
EaeI	YGGCCR	1 cut(s)	408
Eam1105I	GACNNNNNGTC	1 cut(s)	1272
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	428, 561
Eco147I	AGGCCT	3 cut(s)	86, 904, 1091
Eco24I	GRGCYC	2 cut(s)	120, 1287
Eco31I	GGTCTC	1 cut(s)	2234
Eco47I	GGWCC	6 cut(s)	419, 1658, 1807, 1921, 2087, 2293
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	4 cut(s)	395, 1137, 1574, 2619
Eco88I	CYCGRG	2 cut(s)	76, 906
EcoICRI	GAGCTC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	2349
EcoO109I	RGGNCCY	4 cut(s)	1807, 1921, 2087, 2293
EcoRI	GAATTC	1 cut(s)	649
EcoRII	CCWGG	3 cut(s)	86, 268, 2401
EcoT14I	CCWWGG	2 cut(s)	428, 561
EcoT22I	ATGCAT	2 cut(s)	668, 2057
EcoT38I	GRGCYC	2 cut(s)	120, 1287
EgeI	GGCGCC	1 cut(s)	92
EheI	GGCGCC	1 cut(s)	92
ErhI	CCWWGG	2 cut(s)	428, 561
FalI	AAGNNNNNCTT	6 cut(s)	597, 629, 1569, 1601, 1854, 1886
FaqI	GGGAC	1 cut(s)	1820
FauI	CCCGC	2 cut(s)	210, 2376
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	3 cut(s)	964, 1336, 2605
FokI	GGATG	6 cut(s)	243, 543, 1667, 2051, 2058, 2595
FriOI	GRGCYC	2 cut(s)	120, 1287
FspBI	CTAG	5 cut(s)	954, 1407, 1970, 2076, 2231
GlaI	GCGC	7 cut(s)	92, 133, 1036, 1520, 1748, 2138, 2165
GsaI	CCCAGC	2 cut(s)	1050, 2003
GsuI	CTGGAG	3 cut(s)	291, 1008, 2553
HaeII	RGCGCY	3 cut(s)	94, 1522, 2140
HapII	CCGG	7 cut(s)	68, 102, 411, 537, 1287, 2043, 2140
HhaI	GCGC	7 cut(s)	93, 134, 1037, 1521, 1749, 2139, 2166
Hin1I	GRCGYC	2 cut(s)	91, 1060
Hin6I	GCGC	7 cut(s)	91, 132, 1035, 1519, 1747, 2137, 2164
HinP1I	GCGC	7 cut(s)	91, 132, 1035, 1519, 1747, 2137, 2164
HincII	GTYRAC	2 cut(s)	1845, 2484
HindII	GTYRAC	2 cut(s)	1845, 2484
HindIII	AAGCTT	3 cut(s)	180, 1938, 2631
HinfI	GANTC	6 cut(s)	203, 400, 992, 1142, 1991, 2411
HpaII	CCGG	7 cut(s)	68, 102, 411, 537, 1287, 2043, 2140
Hpy166II	GTNNAC	4 cut(s)	610, 1785, 1845, 2484
Hpy188III	TCNNGA	7 cut(s)	654, 968, 987, 1340, 1479, 1838, 2591
Hpy8I	GTNNAC	4 cut(s)	610, 1785, 1845, 2484
Hpy99I	CGWCG	4 cut(s)	13, 16, 19, 22
HpyCH4III	ACNGT	4 cut(s)	741, 945, 1615, 2131
HpyCH4IV	ACGT	4 cut(s)	1060, 2105, 2150, 2654
HpySE526I	ACGT	4 cut(s)	1060, 2105, 2150, 2654
Hsp92I	GRCGYC	2 cut(s)	91, 1060
HspAI	GCGC	7 cut(s)	91, 132, 1035, 1519, 1747, 2137, 2164
KasI	GGCGCC	1 cut(s)	90
KflI	GGGWCCC	1 cut(s)	1807
Ksp22I	TGATCA	3 cut(s)	964, 1336, 2605
LmnI	GCTCC	5 cut(s)	70, 670, 1460, 1897, 2439
Lsp1109I	GCAGC	7 cut(s)	23, 1844, 1897, 2224, 2227, 2476, 2536
MaeI	CTAG	5 cut(s)	954, 1407, 1970, 2076, 2231
MaeII	ACGT	4 cut(s)	1060, 2105, 2150, 2654
MaeIII	GTNAC	7 cut(s)	286, 796, 1219, 1264, 1436, 1992, 2255
MbiI	CCGCTC	1 cut(s)	2383
MfeI	CAATTG	2 cut(s)	618, 1244
MflI	RGATCY	7 cut(s)	265, 413, 888, 1402, 1540, 1864, 2392
MhlI	GDGCHC	5 cut(s)	75, 120, 337, 1287, 1723
Mly113I	GGCGCC	1 cut(s)	91
MlyI	GAGTC	3 cut(s)	212, 394, 2000
MmeI	TCCRAC	3 cut(s)	243, 2160, 2360
Mph1103I	ATGCAT	2 cut(s)	668, 2057
MroXI	GAANNNNTTC	1 cut(s)	1318
MseI	TTAA	8 cut(s)	522, 531, 599, 689, 1131, 1761, 2153, 2319
MslI	CAYNNNNRTG	2 cut(s)	1386, 2595
MspI	CCGG	7 cut(s)	68, 102, 411, 537, 1287, 2043, 2140
MspR9I	CCNGG	5 cut(s)	88, 270, 1287, 2043, 2403
MunI	CAATTG	2 cut(s)	618, 1244
MvaI	CCWGG	3 cut(s)	88, 270, 2403
MvnI	CGCG	1 cut(s)	2166
NarI	GGCGCC	1 cut(s)	91
NciI	CCSGG	2 cut(s)	1287, 2043
NcoI	CCATGG	1 cut(s)	428
NdeI	CATATG	1 cut(s)	496
NmeAIII	GCCGAG	2 cut(s)	139, 604
NmuCI	GTSAC	2 cut(s)	1264, 1992
NsiI	ATGCAT	2 cut(s)	668, 2057
NspI	RCATGY	2 cut(s)	294, 385
NspV	TTCGAA	1 cut(s)	1145
PaeR7I	CTCGAG	1 cut(s)	906
PagI	TCATGA	1 cut(s)	2590
PceI	AGGCCT	3 cut(s)	86, 904, 1091
PciI	ACATGT	2 cut(s)	290, 381
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 17
PdmI	GAANNNNTTC	1 cut(s)	1318
PfeI	GAWTC	3 cut(s)	992, 1142, 2411
Pfl23II	CGTACG	1 cut(s)	2147
PflMI	CCANNNNNTGG	2 cut(s)	562, 1667
PfoI	TCCNGGA	1 cut(s)	268
Ple19I	CGATCG	1 cut(s)	127
PleI	GAGTC	3 cut(s)	211, 394, 1999
PluTI	GGCGCC	1 cut(s)	94
PpsI	GAGTC	3 cut(s)	211, 394, 1999
Ppu21I	YACGTR	1 cut(s)	2655
PpuMI	RGGWCCY	4 cut(s)	1807, 1921, 2087, 2293
PscI	ACATGT	2 cut(s)	290, 381
PshBI	ATTAAT	2 cut(s)	522, 599
PsiI	TTATAA	1 cut(s)	2349
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	4 cut(s)	1807, 1921, 2087, 2293
Psp6I	CCWGG	3 cut(s)	86, 268, 2401
PspFI	CCCAGC	2 cut(s)	1046, 1999
PspGI	CCWGG	3 cut(s)	86, 268, 2401
PspLI	CGTACG	1 cut(s)	2147
PspPI	GGNCC	8 cut(s)	419, 1182, 1658, 1807, 1921, 2040, 2087, 2293
PspPPI	RGGWCCY	4 cut(s)	1807, 1921, 2087, 2293
PspXI	VCTCGAGB	1 cut(s)	906
PstNI	CAGNNNCTG	1 cut(s)	2414
PsuI	RGATCY	7 cut(s)	265, 413, 888, 1402, 1540, 1864, 2392
PvuI	CGATCG	1 cut(s)	127
RsaI	GTAC	6 cut(s)	426, 756, 850, 947, 1411, 2149
RsaNI	GTAC	6 cut(s)	425, 755, 849, 946, 1410, 2148
RseI	CAYNNNNRTG	2 cut(s)	1386, 2595
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	8 cut(s)	522, 531, 599, 689, 1131, 1761, 2153, 2319
Sau96I	GGNCC	8 cut(s)	419, 1182, 1658, 1807, 1921, 2040, 2087, 2293
SchI	GAGTC	3 cut(s)	212, 394, 2000
ScrFI	CCNGG	5 cut(s)	88, 270, 1287, 2043, 2403
SduI	GDGCHC	5 cut(s)	75, 120, 337, 1287, 1723
SfcI	CTRYAG	2 cut(s)	974, 1689
SfoI	GGCGCC	1 cut(s)	92
Sfr274I	CTCGAG	1 cut(s)	906
SfuI	TTCGAA	1 cut(s)	1145
SinI	GGWCC	6 cut(s)	419, 1658, 1807, 1921, 2087, 2293
SlaI	CTCGAG	1 cut(s)	906
SmiMI	CAYNNNNRTG	2 cut(s)	1386, 2595
SmlI	CTYRAG	5 cut(s)	246, 906, 1575, 1836, 2297
SmoI	CTYRAG	5 cut(s)	246, 906, 1575, 1836, 2297
SseBI	AGGCCT	3 cut(s)	86, 904, 1091
SsiI	CCGC	8 cut(s)	54, 97, 217, 814, 892, 1127, 2161, 2383
SspDI	GGCGCC	1 cut(s)	90
SspMI	CTAG	5 cut(s)	954, 1407, 1970, 2076, 2231
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	3 cut(s)	86, 904, 1091
StyD4I	CCNGG	5 cut(s)	86, 268, 1285, 2041, 2401
StyI	CCWWGG	2 cut(s)	428, 561
TaaI	ACNGT	4 cut(s)	741, 945, 1615, 2131
TaiI	ACGT	4 cut(s)	1063, 2108, 2153, 2657
TaqI	TCGA	5 cut(s)	127, 907, 1145, 1276, 1480
TatI	WGTACW	1 cut(s)	1409
TauI	GCSGC	3 cut(s)	57, 817, 2164
TfiI	GAWTC	3 cut(s)	992, 1142, 2411
Tru1I	TTAA	8 cut(s)	522, 531, 599, 689, 1131, 1761, 2153, 2319
Tru9I	TTAA	8 cut(s)	522, 531, 599, 689, 1131, 1761, 2153, 2319
TscAI	CASTG	1 cut(s)	2136
TseFI	GTSAC	2 cut(s)	1264, 1992
TseI	GCWGC	7 cut(s)	36, 1832, 1910, 2212, 2215, 2464, 2524
Tsp45I	GTSAC	2 cut(s)	1264, 1992
TspDTI	ATGAA	7 cut(s)	159, 161, 212, 341, 459, 617, 672
TspGWI	ACGGA	1 cut(s)	2135
TspRI	CASTG	1 cut(s)	2136
Van91I	CCANNNNNTGG	2 cut(s)	562, 1667
VpaK11BI	GGWCC	6 cut(s)	419, 1658, 1807, 1921, 2087, 2293
VspI	ATTAAT	2 cut(s)	522, 599
XagI	CCTNNNNNAGG	1 cut(s)	2349
XapI	RAATTY	2 cut(s)	649, 997
XceI	RCATGY	2 cut(s)	294, 385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2075
XhoI	CTCGAG	1 cut(s)	906
XmnI	GAANNNNTTC	1 cut(s)	1318
XspI	CTAG	5 cut(s)	954, 1407, 1970, 2076, 2231
ZraI	GACGTC	1 cut(s)	1061
Zsp2I	ATGCAT	2 cut(s)	668, 2057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.