Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Forward (+)

1961481 .. 1964901

Gene Structure 3421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000554

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAATCTCATTTTTGAAGTTAAGGATGGAATTGCAGAACTGGCAAGAGACGCATTGAATTCTGAAGGCTTTTGTGTGATTGGAGGTTATATTTCACCTGTTAATGACGCATACAACAAGAGGGGACTTATATCTGCTGAACATCGTATACAGTTGTGTCATCTAGCCTGCAAAAGTTCAGAGTTTGTAATGGTTGATCCATGGGAGGCAAGACAAAGTACCTTCCAACGATGTTTAACAGTACTGTCTAGAATCAAGGGTTGCTTGTCTGAGTCTGGGCTGATACCCAGTGAATCCCTGAAGTGCGTGCTTGTCTGTGGTTCTGATCTACTCCACTCTTTTAGCATTCCTGGAGTTTGGATTCCAGACCAGGTCAGGAGCATATGTAGAGATTATGGTGTGGTTTGCATTCGCAGGGAGGGACAAGATGTTGACAAGATAATGTCAAATGATGATATTTTGAGGGAGAATAGGGGTAACATAAGAATTGTGGATGAGCTTGTACCAAACCAAATAAGCTCGACAAGAGTAAGGGATTGCATCTCAAGAGGGTTGTCGATAAAATATCTGACTGCAGATGAAGTAATTTATTATATTAAAGAGCAGCATCTCTTCTTGAACTCAAATGACAGACTTCCTATTTCTGTACTTCAAAAAGCTGCTGCTAAGTCCAGGGAATTCGAAGCTGCATATGGTAAACACTTGAAGCATTCTGAAGATAGCTTTCCCTTTCAAAGTCCAGTTGACAAGATGGTTGAGTGCTTCCAAAAGTTTACCAACATCGTGGCAAAGTTGACTGGTCACGAGTCAGCTGAGGGCATTGACATTGACTCCCTGACTGAAAGTTTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

285

Amino Acids

31.82

Weight (kDa)

5.7

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	12 - 178	1.6e-08	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	148
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	2 cut(s)	58, 677
AcuI	CTGAAG	3 cut(s)	84, 320, 735
AfaI	GTAC	4 cut(s)	220, 243, 504, 648
AgsI	TTSAA	6 cut(s)	17, 58, 619, 653, 706, 734
AjnI	CCWGG	3 cut(s)	349, 369, 671
AluBI	AGCT	6 cut(s)	499, 519, 659, 686, 723, 812
AluI	AGCT	6 cut(s)	499, 519, 659, 686, 723, 812
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	191
ApeKI	GCWGC	4 cut(s)	604, 659, 662, 686
ApoI	RAATTY	2 cut(s)	58, 677
ArsI	GACNNNNNNTTYG	1 cut(s)	829
AsuHPI	GGTGA	1 cut(s)	87
AsuII	TTCGAA	1 cut(s)	681
BauI	CACGAG	1 cut(s)	803
BbvCI	CCTCAGC	1 cut(s)	813
BbvI	GCAGC	4 cut(s)	616, 646, 649, 673
BccI	CCATC	2 cut(s)	20, 745
BciT130I	CCWGG	3 cut(s)	351, 371, 673
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	2 cut(s)	164, 249
BfmI	CTRYAG	1 cut(s)	573
BisI	GCNGC	4 cut(s)	605, 660, 663, 687
BlsI	GCNGC	4 cut(s)	606, 661, 664, 688
BmcAI	AGTACT	1 cut(s)	243
Bme1390I	CCNGG	3 cut(s)	351, 371, 673
BmrFI	CCNGG	3 cut(s)	351, 371, 673
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	549, 616
BmuI	ACTGGG	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	813
Bpu14I	TTCGAA	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	529
BsaJI	CCNNGG	2 cut(s)	200, 672
BsaXI	ACNNNNNCTCC	4 cut(s)	370, 400, 815, 845
Bse1I	ACTGG	4 cut(s)	45, 288, 740, 802
BseBI	CCWGG	3 cut(s)	351, 371, 673
BseDI	CCNNGG	2 cut(s)	200, 672
BseGI	GGATG	2 cut(s)	31, 499
BseMII	CTCAG	2 cut(s)	261, 804
BseNI	ACTGG	4 cut(s)	45, 288, 740, 802
BseXI	GCAGC	4 cut(s)	616, 646, 649, 673
BslFI	GGGAC	2 cut(s)	138, 435
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	2 cut(s)	138, 435
BsmI	GAATGC	3 cut(s)	345, 408, 709
Bsp119I	TTCGAA	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	196, 325
Bsp19I	CCATGG	1 cut(s)	200
BspCNI	CTCAG	2 cut(s)	262, 805
BspMAI	CTGCAG	1 cut(s)	577
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	681
BsrI	ACTGG	4 cut(s)	45, 288, 740, 802
BssECI	CCNNGG	2 cut(s)	200, 672
BssMI	GATC	2 cut(s)	196, 325
BssNAI	GTATAC	1 cut(s)	149
BssSI	CACGAG	1 cut(s)	803
BssT1I	CCWWGG	1 cut(s)	200
Bst1107I	GTATAC	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	803
Bst2UI	CCWGG	3 cut(s)	351, 371, 673
Bst4CI	ACNGT	3 cut(s)	153, 241, 246
Bst6I	CTCTTC	1 cut(s)	617
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	2 cut(s)	169, 308
BstDEI	CTNAG	3 cut(s)	270, 666, 813
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	31, 499
BstKTI	GATC	2 cut(s)	199, 328
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	196, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstNI	CCWGG	3 cut(s)	351, 371, 673
BstSCI	CCNGG	3 cut(s)	349, 369, 671
BstSFI	CTRYAG	1 cut(s)	573
BstV1I	GCAGC	4 cut(s)	616, 646, 649, 673
BstXI	CCANNNNNNTGG	1 cut(s)	784
BstZ17I	GTATAC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	2 cut(s)	31, 499
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	169, 308
CseI	GACGC	2 cut(s)	59, 116
CsiI	ACCWGGT	1 cut(s)	369
Csp6I	GTAC	4 cut(s)	219, 242, 503, 647
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	9 cut(s)	69, 167, 280, 499, 519, 659, 686, 723, 812
CviKI_1	RGCY	9 cut(s)	69, 167, 280, 499, 519, 659, 686, 723, 812
CviQI	GTAC	4 cut(s)	219, 242, 503, 647
DdeI	CTNAG	3 cut(s)	270, 666, 813
DpnI	GATC	2 cut(s)	198, 327
DpnII	GATC	2 cut(s)	196, 325
Eam1104I	CTCTTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	617
Eco130I	CCWWGG	1 cut(s)	200
Eco57I	CTGAAG	3 cut(s)	84, 320, 735
EcoRI	GAATTC	2 cut(s)	58, 677
EcoRII	CCWGG	3 cut(s)	349, 369, 671
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	204
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	2 cut(s)	138, 435
FatI	CATG	1 cut(s)	200
FauNDI	CATATG	2 cut(s)	383, 691
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	605, 660, 663, 687
FokI	GGATG	2 cut(s)	38, 506
Fsp4HI	GCNGC	4 cut(s)	605, 660, 663, 687
FspBI	CTAG	2 cut(s)	164, 249
GluI	GCNGC	4 cut(s)	605, 660, 663, 687
GsuI	CTGGAG	1 cut(s)	372
HgaI	GACGC	2 cut(s)	59, 116
Hin1II	CATG	1 cut(s)	204
HincII	GTYRAC	3 cut(s)	433, 745, 795
HindII	GTYRAC	3 cut(s)	433, 745, 795
HinfI	GANTC	7 cut(s)	4, 252, 272, 293, 361, 806, 830
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	6 cut(s)	149, 433, 698, 745, 774, 795
Hpy188I	TCNGA	6 cut(s)	64, 181, 271, 325, 570, 715
Hpy188III	TCNNGA	6 cut(s)	249, 365, 376, 546, 616, 803
Hpy8I	GTNNAC	6 cut(s)	149, 433, 698, 745, 774, 795
HpyAV	CCTTC	2 cut(s)	59, 232
HpyCH4III	ACNGT	3 cut(s)	153, 241, 246
HpyCH4V	TGCA	6 cut(s)	35, 171, 408, 540, 575, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	3 cut(s)	270, 666, 813
Hsp92II	CATG	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	196, 325
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	4 cut(s)	616, 646, 649, 673
LweI	GCATC	2 cut(s)	549, 616
MabI	ACCWGGT	1 cut(s)	369
MaeI	CTAG	2 cut(s)	164, 249
MaeIII	GTNAC	2 cut(s)	476, 800
MalI	GATC	2 cut(s)	198, 327
MboI	GATC	2 cut(s)	196, 325
MboII	GAAGA	2 cut(s)	604, 728
MluCI	AATT	5 cut(s)	30, 58, 486, 585, 677
MlyI	GAGTC	3 cut(s)	281, 815, 824
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	7 cut(s)	77, 114, 199, 412, 456, 542, 808
MseI	TTAA	4 cut(s)	21, 102, 236, 597
MspA1I	CMGCKG	1 cut(s)	812
MspR9I	CCNGG	3 cut(s)	351, 371, 673
Mva1269I	GAATGC	3 cut(s)	345, 408, 709
MvaI	CCWGG	3 cut(s)	351, 371, 673
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NcoI	CCATGG	1 cut(s)	200
NdeI	CATATG	2 cut(s)	383, 691
NdeII	GATC	2 cut(s)	196, 325
NlaIII	CATG	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	800
NspV	TTCGAA	1 cut(s)	681
PctI	GAATGC	3 cut(s)	345, 408, 709
PfeI	GAWTC	4 cut(s)	4, 252, 293, 361
PflFI	GACNNNGTC	1 cut(s)	371
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	606, 661, 664, 688
PleI	GAGTC	3 cut(s)	280, 814, 824
PpsI	GAGTC	3 cut(s)	280, 814, 824
Psp6I	CCWGG	3 cut(s)	349, 369, 671
PspGI	CCWGG	3 cut(s)	349, 369, 671
PsrI	GAACNNNNNNTAC	2 cut(s)	132, 164
PstI	CTGCAG	1 cut(s)	577
PsyI	GACNNNGTC	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	4 cut(s)	220, 243, 504, 648
RsaNI	GTAC	4 cut(s)	219, 242, 503, 647
SaqAI	TTAA	4 cut(s)	21, 102, 236, 597
SatI	GCNGC	4 cut(s)	605, 660, 663, 687
Sau3AI	GATC	2 cut(s)	196, 325
ScaI	AGTACT	1 cut(s)	243
SchI	GAGTC	3 cut(s)	281, 815, 824
ScrFI	CCNGG	3 cut(s)	351, 371, 673
SexAI	ACCWGGT	1 cut(s)	369
SfaNI	GCATC	2 cut(s)	549, 616
SfcI	CTRYAG	1 cut(s)	573
SfuI	TTCGAA	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	5 cut(s)	30, 58, 486, 585, 677
SspMI	CTAG	2 cut(s)	164, 249
StyD4I	CCNGG	3 cut(s)	349, 369, 671
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	153, 241, 246
TaqI	TCGA	3 cut(s)	521, 557, 681
TasI	AATT	5 cut(s)	30, 58, 486, 585, 677
TatI	WGTACW	2 cut(s)	241, 646
TfiI	GAWTC	4 cut(s)	4, 252, 293, 361
Tru1I	TTAA	4 cut(s)	21, 102, 236, 597
Tru9I	TTAA	4 cut(s)	21, 102, 236, 597
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	4 cut(s)	604, 659, 662, 686
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	2 cut(s)	17, 594
TspRI	CASTG	1 cut(s)	295
Tth111I	GACNNNGTC	1 cut(s)	371
XapI	RAATTY	2 cut(s)	58, 677
XbaI	TCTAGA	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	2 cut(s)	164, 249
ZrmI	AGTACT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.