Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Reverse (-)

70033573 .. 70036747

Gene Structure 3175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG500700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAATCTCATTTCTGAAGTTAAGGATGGAATTGCAGAACTGGCGAGAGACGCATTGAATTCTGAAGGCTTTTGTGTGATTGGAGGTTATATTTCACCTGTTAATGATGCATACAACAAGAGGGGACTTATATCTGCTGAACATCGTATACAGTTGTGTCATCTAGCCTGCAAAAGTTCAGAGTTTGTAATGGTTGATCCATGGGAGGCAAGACAAAGTACCTTCCAACGATGTTTAACAGTACTGTCTAGAATCAAGGGTTTCTTGTCTGAGTCTGGGCTGATACCCGGTGAATCCCTGAAGTGCGTGCTTGTCTGTGGTTCTGATCTACTCCACTCTTTTAGCATTCCTGGAGTTTGGATTCCAGACCAGGTCAGGAGCATATGTAGAGATTATGGTGTGGTTTGCATTTGCAGGGAGGGACAAGATGTTGACAAGATAATGTCAAATGATGATATTTTGAGGGAGAATAGGGGTAACATAAGAATTGTGGATGAGCTTGTACCAAACCAAATAAGCTCGACAAGAGTAAGGACTTCCTATTTCTGTACTTCAAAAAGCTGCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

189

Amino Acids

20.97

Weight (kDa)

5.93

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	12 - 179	1.7e-08	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	148
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	3 cut(s)	36, 84, 320
AfaI	GTAC	4 cut(s)	220, 243, 504, 550
AgsI	TTSAA	2 cut(s)	58, 555
AjnI	CCWGG	2 cut(s)	349, 369
AluBI	AGCT	3 cut(s)	499, 519, 561
AluI	AGCT	3 cut(s)	499, 519, 561
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	561
ApoI	RAATTY	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	87, 302
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	2 cut(s)	351, 371
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	2 cut(s)	164, 249
BisI	GCNGC	2 cut(s)	562, 565
BlsI	GCNGC	2 cut(s)	563, 566
BmcAI	AGTACT	1 cut(s)	243
Bme1390I	CCNGG	3 cut(s)	288, 351, 371
BmrFI	CCNGG	3 cut(s)	288, 351, 371
BmsI	GCATC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bse1I	ACTGG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	351, 371
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	2 cut(s)	31, 499
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	138, 435
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	2 cut(s)	138, 435
BsmI	GAATGC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	196, 325
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	1 cut(s)	564
BspCNI	CTCAG	1 cut(s)	262
BspPI	GGATC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	196, 325
BssNAI	GTATAC	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	200
Bst1107I	GTATAC	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	351, 371
Bst4CI	ACNGT	3 cut(s)	153, 241, 246
BstC8I	GCNNGC	2 cut(s)	169, 308
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	31, 499
BstKTI	GATC	2 cut(s)	199, 328
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	196, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstNI	CCWGG	2 cut(s)	351, 371
BstSCI	CCNGG	3 cut(s)	286, 349, 369
BstV1I	GCAGC	1 cut(s)	548
BstZ17I	GTATAC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	2 cut(s)	31, 499
Cac8I	GCNNGC	2 cut(s)	169, 308
CseI	GACGC	1 cut(s)	59
CsiI	ACCWGGT	1 cut(s)	369
Csp6I	GTAC	4 cut(s)	219, 242, 503, 549
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	7 cut(s)	69, 167, 280, 499, 519, 561, 567
CviKI_1	RGCY	7 cut(s)	69, 167, 280, 499, 519, 561, 567
CviQI	GTAC	4 cut(s)	219, 242, 503, 549
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	198, 327
DpnII	GATC	2 cut(s)	196, 325
Eco130I	CCWWGG	1 cut(s)	200
Eco57I	CTGAAG	3 cut(s)	36, 84, 320
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	349, 369
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	204
FaiI	YATR	9 cut(s)	90, 112, 131, 149, 202, 383, 385, 396, 482
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	2 cut(s)	138, 435
FatI	CATG	1 cut(s)	200
FauNDI	CATATG	1 cut(s)	383
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	562, 565
FokI	GGATG	2 cut(s)	38, 506
Fsp4HI	GCNGC	2 cut(s)	562, 565
FspBI	CTAG	2 cut(s)	164, 249
GluI	GCNGC	2 cut(s)	562, 565
GsuI	CTGGAG	1 cut(s)	372
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	5 cut(s)	4, 252, 272, 293, 361
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	87, 302
Hpy166II	GTNNAC	2 cut(s)	149, 433
Hpy188I	TCNGA	5 cut(s)	16, 64, 181, 271, 325
Hpy188III	TCNNGA	3 cut(s)	249, 365, 376
Hpy8I	GTNNAC	2 cut(s)	149, 433
HpyAV	CCTTC	2 cut(s)	59, 232
HpyCH4III	ACNGT	3 cut(s)	153, 241, 246
HpyCH4V	TGCA	5 cut(s)	35, 110, 171, 408, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	196, 325
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	1 cut(s)	97
MabI	ACCWGGT	1 cut(s)	369
MaeI	CTAG	2 cut(s)	164, 249
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	2 cut(s)	198, 327
MboI	GATC	2 cut(s)	196, 325
MluCI	AATT	3 cut(s)	30, 58, 486
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	5 cut(s)	77, 114, 199, 412, 456
Mph1103I	ATGCAT	1 cut(s)	112
MseI	TTAA	3 cut(s)	21, 102, 236
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	3 cut(s)	288, 351, 371
Mva1269I	GAATGC	1 cut(s)	345
MvaI	CCWGG	2 cut(s)	351, 371
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NciI	CCSGG	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	200
NdeI	CATATG	1 cut(s)	383
NdeII	GATC	2 cut(s)	196, 325
NlaIII	CATG	1 cut(s)	204
NsiI	ATGCAT	1 cut(s)	112
PctI	GAATGC	1 cut(s)	345
PfeI	GAWTC	4 cut(s)	4, 252, 293, 361
PflFI	GACNNNGTC	1 cut(s)	371
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	563, 566
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp6I	CCWGG	2 cut(s)	349, 369
PspGI	CCWGG	2 cut(s)	349, 369
PsrI	GAACNNNNNNTAC	2 cut(s)	132, 164
PsyI	GACNNNGTC	1 cut(s)	371
RsaI	GTAC	4 cut(s)	220, 243, 504, 550
RsaNI	GTAC	4 cut(s)	219, 242, 503, 549
SaqAI	TTAA	3 cut(s)	21, 102, 236
SatI	GCNGC	2 cut(s)	562, 565
Sau3AI	GATC	2 cut(s)	196, 325
ScaI	AGTACT	1 cut(s)	243
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	3 cut(s)	288, 351, 371
SetI	ASST	7 cut(s)	88, 100, 224, 375, 501, 521, 563
SexAI	ACCWGGT	1 cut(s)	369
SfaNI	GCATC	1 cut(s)	97
Sse9I	AATT	3 cut(s)	30, 58, 486
SsiI	CCGC	1 cut(s)	564
SspMI	CTAG	2 cut(s)	164, 249
StyD4I	CCNGG	3 cut(s)	286, 349, 369
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	153, 241, 246
TaqI	TCGA	1 cut(s)	521
TasI	AATT	3 cut(s)	30, 58, 486
TatI	WGTACW	2 cut(s)	241, 548
TauI	GCSGC	1 cut(s)	567
TfiI	GAWTC	4 cut(s)	4, 252, 293, 361
Tru1I	TTAA	3 cut(s)	21, 102, 236
Tru9I	TTAA	3 cut(s)	21, 102, 236
TseI	GCWGC	1 cut(s)	561
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	58
XbaI	TCTAGA	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	2 cut(s)	164, 249
ZrmI	AGTACT	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.