AT5G56900

Protein similar to CwfJ C-terminus 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007131
Physical Location & Seq
Reverse (-)
23019245 .. 23022765
3521 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56900.2

Sequence Viewer

Length: 1215 bp
ATGGAAGTTAAACCTCGCTATCACATTGCAGGTTCTATGGGGGTATTTTATGCCCGTGAACCTTACCTCAACGCTGAATCTACTCATGTAACTCGCTTTATTGGTCTTGCTCAAGTTGGAAATAAAAACAAACAGAAATTTCTTCATGCGCTTTCTCCTACACCAACATCTACCATGTCACCAGCAGAGCTTAGTGCAAAGCCTCCAAAAACTACGCTATGGCCTTATAATTTACAAGATGGAGCTGCTGAATCGAAGAAGAGGCCAAACGATAGTGACTCTGATTCACAGTATTGGAGGTATGATGTCCCAAAGCGGCAAAAGAGTGGATCTCAAGGGGAAAAGCTCTGTTTCAAATTTGTCTGCTCAGGTTCCTGTCCTCGTGGTGAAGATTGCCATTTCCAACACAACGCTGAAGCAAGAGAACAGTGTCGTAGAGGTGTTTGTCTTGATCTTATCATCAAAGGTAAGTGTGAAAAAGGCCCAGAGTGCAGCTACAAGCATGAGTTTCAAGATGAAAGTAGCATACAAAGGAAGCCCAGATCTGAGAATGCTAACAGGTCAAAAGAATGCTGGTTTTGTCTATCAAGCCCGAGTGTGGAGTCACATTTAATCGTCAGTGTAGGGGAAAGTTTTTATTGTGCTCTACCCAAAGGTTCGCTAGTCGAAGATCACATATTGATAATCCCAATCGAACATTTGCCCAATACTCTGGTTTTATCCCCTGAGGTTGAATCAGAGCTCAGTAGATACCAAAATGGTCTGAGAAATTGTTATAAGAGCCAAGGAAATGATGCAGTTTTCTTTGAATTGGTCTCTAAACGTGTTTCTCATGCTAACCTCCAAGTTGTTCCTGTTCCATCATCCAGAGCTCGTCTTCTTCCTAATATCTTTAGTCTGGCGGCTGAAAAACTGGGCTTTAAGCTTGTGACTAAAAAGTTTAATGATAGTACTGATGGCAGAAAATATCTGCAGAAGGAATATAATGCGGCATTGGGTCTCTTCTATGTGGAACTTCCTGATGGAACTGTGCTATCACACACCTTGGAAGAAAACGAAGTATTCCCTGCGCAGTTTGGACGGGAGGTTCTAGCAGGGTTGCTAAAGATCCCAGATAGGGCCGATTGGAGAAACTGTAAAATTAGCCAAGAAGAGGAGGCAAAGCTGGCTGAAGATTTCAAGAAACAATTTCAAGAATTTGACCCTTGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CwfJ_C_1 CwfJ_C_2 zf-CCCH

Protein Analysis

404

Amino Acids

45.69

Weight (kDa)

7.86

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CwfJ_C_1 PF04677 371 - 490 3.1e-45 Protein similar to CwfJ C-terminal
CwfJ_C_2 PF04676 504 - 593 1.5e-19 Protein similar to CwfJ C-terminus 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 228, 777
Acc16I TGCGCA 1 cut(s) 1071
Acc36I ACCTGC 1 cut(s) 20
AciI CCGC 3 cut(s) 316, 902, 989
AclWI GGATC 2 cut(s) 337, 1102
AcsI RAATTY 3 cut(s) 137, 356, 1196
AcuI CTGAAG 2 cut(s) 435, 1191
AfaI GTAC 1 cut(s) 952
AfiI CCNNNNNNNGG 3 cut(s) 598, 1117, 1153
AflIII ACRYGT 1 cut(s) 823
AgsI TTSAA 6 cut(s) 355, 512, 734, 809, 1180, 1193
AloI GAACNNNNNNTCC 2 cut(s) 1071, 1103
AluBI AGCT 8 cut(s) 190, 245, 346, 495, 742, 872, 925, 1165
AluI AGCT 8 cut(s) 190, 245, 346, 495, 742, 872, 925, 1165
Alw21I GWGCWC 3 cut(s) 646, 744, 874
Alw26I GTCTC 2 cut(s) 820, 1004
AlwI GGATC 2 cut(s) 337, 1102
Ama87I CYCGRG 1 cut(s) 592
AoxI GGCC 4 cut(s) 221, 263, 481, 1119
ApeKI GCWGC 2 cut(s) 245, 492
ApoI RAATTY 3 cut(s) 137, 356, 1196
AspLEI GCGC 2 cut(s) 151, 1072
AspS9I GGNCC 2 cut(s) 482, 1119
AsuHPI GGTGA 2 cut(s) 171, 398
AvaI CYCGRG 1 cut(s) 592
AxyI CCTNAGG 1 cut(s) 726
BanII GRGCYC 2 cut(s) 744, 874
BauI CACGAG 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 869
Bbv12I GWGCWC 3 cut(s) 646, 744, 874
BbvI GCAGC 2 cut(s) 232, 504
BccI CCATC 4 cut(s) 233, 868, 950, 1016
BcoDI GTCTC 2 cut(s) 820, 1004
BfaI CTAG 2 cut(s) 662, 1091
BfmI CTRYAG 1 cut(s) 971
BfuAI ACCTGC 1 cut(s) 20
BglII AGATCT 1 cut(s) 542
BisI GCNGC 5 cut(s) 246, 317, 493, 903, 990
BlsI GCNGC 5 cut(s) 247, 318, 494, 904, 991
BmcAI AGTACT 1 cut(s) 952
BmeT110I CYCGRG 1 cut(s) 592
BmgT120I GGNCC 2 cut(s) 482, 1119
BmiI GGNNCC 1 cut(s) 373
BmrI ACTGGG 1 cut(s) 923
BmsI GCATC 1 cut(s) 784
BmuI ACTGGG 1 cut(s) 923
BpiI GAAGAC 1 cut(s) 869
BplI GAGNNNNNCTC 2 cut(s) 316, 348
Bpu10I CCTNAGC 1 cut(s) 367
BpuEI CTTGAG 2 cut(s) 96, 318
BsaI GGTCTC 2 cut(s) 820, 1004
BsaJI CCNNGG 2 cut(s) 784, 1044
BsaXI ACNNNNNCTCC 2 cut(s) 1120, 1150
Bsc4I CCNNNNNNNGG 3 cut(s) 598, 1117, 1153
Bse1I ACTGG 1 cut(s) 918
Bse21I CCTNAGG 1 cut(s) 726
Bse3DI GCAATG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 784, 1044
BseGI GGATG 1 cut(s) 863
BseLI CCNNNNNNNGG 3 cut(s) 598, 1117, 1153
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 5 cut(s) 381, 537, 717, 755, 757
BseNI ACTGG 1 cut(s) 918
BseRI GAGGAG 1 cut(s) 1169
BseXI GCAGC 2 cut(s) 232, 504
BsgI GTGCAG 1 cut(s) 511
BshFI GGCC 4 cut(s) 223, 265, 483, 1121
BsiHKAI GWGCWC 3 cut(s) 646, 744, 874
BsiHKCI CYCGRG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 3 cut(s) 598, 1117, 1153
BsmAI GTCTC 2 cut(s) 820, 1004
BsmFI GGGAC 1 cut(s) 293
BsmI GAATGC 2 cut(s) 556, 575
BsnI GGCC 4 cut(s) 223, 265, 483, 1121
Bso31I GGTCTC 2 cut(s) 820, 1004
BsoBI CYCGRG 1 cut(s) 592
Bsp1286I GDGCHC 3 cut(s) 646, 744, 874
Bsp143I GATC 5 cut(s) 329, 451, 542, 670, 1107
BspACI CCGC 3 cut(s) 316, 902, 989
BspANI GGCC 4 cut(s) 223, 265, 483, 1121
BspCNI CTCAG 5 cut(s) 380, 538, 718, 756, 756
BspLI GGNNCC 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 975
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 2 cut(s) 337, 1102
BspTNI GGTCTC 2 cut(s) 820, 1004
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 918
BssECI CCNNGG 2 cut(s) 784, 1044
BssMI GATC 5 cut(s) 329, 451, 542, 670, 1107
BssSI CACGAG 1 cut(s) 381
BssT1I CCWWGG 2 cut(s) 784, 1044
Bst2BI CACGAG 1 cut(s) 381
Bst4CI ACNGT 4 cut(s) 291, 429, 1030, 1136
Bst6I CTCTTC 3 cut(s) 254, 1007, 1146
BstC8I GCNNGC 1 cut(s) 1167
BstDEI CTNAG 6 cut(s) 191, 367, 546, 726, 743, 764
BstF5I GGATG 1 cut(s) 863
BstHHI GCGC 2 cut(s) 151, 1072
BstKTI GATC 5 cut(s) 332, 454, 545, 673, 1110
BstMAI GTCTC 2 cut(s) 820, 1004
BstMBI GATC 5 cut(s) 329, 451, 542, 670, 1107
BstMWI GCNNNNNNNGC 2 cut(s) 489, 1166
BstSFI CTRYAG 1 cut(s) 971
BstV1I GCAGC 2 cut(s) 232, 504
BstV2I GAAGAC 1 cut(s) 869
BstX2I RGATCY 3 cut(s) 329, 542, 1107
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 3 cut(s) 329, 542, 1107
Bsu36I CCTNAGG 1 cut(s) 726
BsuRI GGCC 4 cut(s) 223, 265, 483, 1121
BtsCI GGATG 1 cut(s) 863
BtsIMutI CAGTG 2 cut(s) 434, 625
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 1167
CfoI GCGC 2 cut(s) 151, 1072
Cfr13I GGNCC 2 cut(s) 482, 1119
Csp6I GTAC 1 cut(s) 951
CviAII CATG 5 cut(s) 86, 146, 175, 503, 833
CviQI GTAC 1 cut(s) 951
DdeI CTNAG 6 cut(s) 191, 367, 546, 726, 743, 764
DpnI GATC 5 cut(s) 331, 453, 544, 672, 1109
DpnII GATC 5 cut(s) 329, 451, 542, 670, 1107
Eam1104I CTCTTC 3 cut(s) 254, 1007, 1146
EarI CTCTTC 3 cut(s) 254, 1007, 1146
Ecl136II GAGCTC 2 cut(s) 742, 872
Eco130I CCWWGG 2 cut(s) 784, 1044
Eco24I GRGCYC 2 cut(s) 744, 874
Eco31I GGTCTC 2 cut(s) 820, 1004
Eco53kI GAGCTC 2 cut(s) 742, 872
Eco57I CTGAAG 2 cut(s) 435, 1191
Eco81I CCTNAGG 1 cut(s) 726
Eco88I CYCGRG 1 cut(s) 592
EcoICRI GAGCTC 2 cut(s) 742, 872
EcoT14I CCWWGG 2 cut(s) 784, 1044
EcoT38I GRGCYC 2 cut(s) 744, 874
ErhI CCWWGG 2 cut(s) 784, 1044
FaeI CATG 5 cut(s) 89, 149, 178, 506, 836
FaqI GGGAC 1 cut(s) 293
FatI CATG 5 cut(s) 85, 145, 174, 502, 832
Fnu4HI GCNGC 5 cut(s) 246, 317, 493, 903, 990
FokI GGATG 1 cut(s) 850
FriOI GRGCYC 2 cut(s) 744, 874
Fsp4HI GCNGC 5 cut(s) 246, 317, 493, 903, 990
FspBI CTAG 2 cut(s) 662, 1091
FspI TGCGCA 1 cut(s) 1071
GlaI GCGC 2 cut(s) 150, 1071
GluI GCNGC 5 cut(s) 246, 317, 493, 903, 990
HaeIII GGCC 4 cut(s) 223, 265, 483, 1121
HhaI GCGC 2 cut(s) 151, 1072
Hin1II CATG 5 cut(s) 89, 149, 178, 506, 836
Hin6I GCGC 2 cut(s) 149, 1070
HinP1I GCGC 2 cut(s) 149, 1070
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 6 cut(s) 77, 251, 278, 284, 602, 734
HphI GGTGA 2 cut(s) 171, 398
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 4 cut(s) 283, 547, 739, 765
Hpy188III TCNNGA 6 cut(s) 449, 512, 867, 1019, 1180, 1193
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 970
HpyCH4III ACNGT 4 cut(s) 291, 429, 1030, 1136
HpyCH4IV ACGT 1 cut(s) 823
HpyCH4V TGCA 5 cut(s) 29, 197, 492, 797, 973
HpyF10VI GCNNNNNNNGC 2 cut(s) 489, 1166
HpyF3I CTNAG 6 cut(s) 191, 367, 546, 726, 743, 764
HpySE526I ACGT 1 cut(s) 823
Hsp92II CATG 5 cut(s) 89, 149, 178, 506, 836
HspAI GCGC 2 cut(s) 149, 1070
Kzo9I GATC 5 cut(s) 329, 451, 542, 670, 1107
LmnI GCTCC 1 cut(s) 242
Lsp1109I GCAGC 2 cut(s) 232, 504
LweI GCATC 1 cut(s) 784
MaeI CTAG 2 cut(s) 662, 1091
MaeII ACGT 1 cut(s) 823
MaeIII GTNAC 5 cut(s) 88, 177, 275, 603, 928
MalI GATC 5 cut(s) 331, 453, 544, 672, 1109
MboI GATC 5 cut(s) 329, 451, 542, 670, 1107
MflI RGATCY 3 cut(s) 329, 542, 1107
MhlI GDGCHC 3 cut(s) 646, 744, 874
MluCI AATT 8 cut(s) 137, 229, 356, 769, 809, 1140, 1187, 1196
MlyI GAGTC 2 cut(s) 272, 611
MmeI TCCRAC 2 cut(s) 97, 427
MseI TTAA 4 cut(s) 9, 611, 921, 942
Mva1269I GAATGC 2 cut(s) 556, 575
MwoI GCNNNNNNNGC 2 cut(s) 489, 1166
NdeII GATC 5 cut(s) 329, 451, 542, 670, 1107
NlaIII CATG 5 cut(s) 89, 149, 178, 506, 836
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 4 cut(s) 177, 275, 603, 928
NsbI TGCGCA 1 cut(s) 1071
PctI GAATGC 2 cut(s) 556, 575
PfeI GAWTC 4 cut(s) 77, 251, 284, 734
PkrI GCNGC 5 cut(s) 247, 318, 494, 904, 991
PleI GAGTC 2 cut(s) 272, 610
PpsI GAGTC 2 cut(s) 272, 610
PsiI TTATAA 2 cut(s) 228, 777
Psp124BI GAGCTC 2 cut(s) 744, 874
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 2 cut(s) 482, 1119
PstI CTGCAG 1 cut(s) 975
PsuI RGATCY 3 cut(s) 329, 542, 1107
RsaI GTAC 1 cut(s) 952
RsaNI GTAC 1 cut(s) 951
SacI GAGCTC 2 cut(s) 744, 874
SaqAI TTAA 4 cut(s) 9, 611, 921, 942
SatI GCNGC 5 cut(s) 246, 317, 493, 903, 990
Sau3AI GATC 5 cut(s) 329, 451, 542, 670, 1107
Sau96I GGNCC 2 cut(s) 482, 1119
ScaI AGTACT 1 cut(s) 952
SchI GAGTC 2 cut(s) 272, 611
SduI GDGCHC 3 cut(s) 646, 744, 874
SfaNI GCATC 1 cut(s) 784
SfcI CTRYAG 1 cut(s) 971
SmlI CTYRAG 2 cut(s) 111, 333
SmoI CTYRAG 2 cut(s) 111, 333
Sse9I AATT 8 cut(s) 137, 229, 356, 769, 809, 1140, 1187, 1196
SsiI CCGC 3 cut(s) 316, 902, 989
SspMI CTAG 2 cut(s) 662, 1091
SstI GAGCTC 2 cut(s) 744, 874
StyI CCWWGG 2 cut(s) 784, 1044
TaaI ACNGT 4 cut(s) 291, 429, 1030, 1136
TaiI ACGT 1 cut(s) 826
TaqI TCGA 3 cut(s) 254, 666, 693
TasI AATT 8 cut(s) 137, 229, 356, 769, 809, 1140, 1187, 1196
TatI WGTACW 1 cut(s) 950
TauI GCSGC 3 cut(s) 319, 905, 992
TfiI GAWTC 4 cut(s) 77, 251, 284, 734
Tru1I TTAA 4 cut(s) 9, 611, 921, 942
Tru9I TTAA 4 cut(s) 9, 611, 921, 942
TscAI CASTG 2 cut(s) 434, 625
TseFI GTSAC 4 cut(s) 177, 275, 603, 928
TseI GCWGC 2 cut(s) 245, 492
Tsp45I GTSAC 4 cut(s) 177, 275, 603, 928
TspDTI ATGAA 2 cut(s) 134, 531
TspRI CASTG 2 cut(s) 434, 625
XapI RAATTY 3 cut(s) 137, 356, 1196
XspI CTAG 2 cut(s) 662, 1091
ZrmI AGTACT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.