Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007131

Physical Location & Seq

Genomic Coordinates Reverse (-)

6701450 .. 6705116

Gene Structure 3667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46847

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

ATGGCTCCTCCCAAAATCTTACTCTGCGGCGACATCTCCGGCAACCTCAAGCAGCTCTTCAAACGAGTCGTCTCGGTCAACAAATCGGCCGGTCCCTTCGACGCGTTGTTCTGCGTCGGCCAGTTCTTTCCCGACTCGGCGGACCAGCTCGACGAGTTCACCGGCTACATCGAAGGCCGGGCCGAGATTCCTCTCCCGACCTACTTCATCGGCGACTATGGCGTCGGCGCCACTAAGTTTCTATTGGCGGCAACCAAGGACTCGGGGAACCAAGGCTTCAAAATGGACGGCTTGAAGGTTTGCAGCAATCTCTACTGGCTGAAAGGCAGTGGCAAATTCACCTTCCACGGGTTATCGGTGGTGTATTTGTCTGGTCTGCAATCTTCTGATAGTCAACAGTTTGGGACTTACAGTCAGGATGATGTTGATGCATTGCGAGCAATTGCTGAAGATCCTGGGATCGTTGACTTTGGGGTTACAAATAAAGCAGGTACATCTGATGTTCCTCCTGGAGCCTCTGAGCCTTTTGGCACTGACTCTACTGTGGCAGAGTTAGCAGCCGAGATCAAACCACGCTATCATGTTGCAGGCACAAAAGGCATGTTCTATGCGCGTGAGCCTTACTCCAATGTCGATGCTGTGCATGTCACCCGCTTCATAGGTCTTGCTCCAGTTGGAAACAGAGACAAGCAGAAATTTCTTCATGCGCTTTCTCCTACTCCAGCATCTACTATGTCTGCTCTTGAAATTAAGACAAAATCGCCAAACACTACCTTGTCTCCATACATGTATATCAAGGGAACAGCTAATGCGAAAGAAGGTGCAAAGAGGTCTAGTGATAGTGTTTCTGATTCTGATTCACAGTACTGGAGATATGATGTCTCCCAAAAAAGGCAGAAACATGGAGCTGGAGATGGTAATAGGCTGTGCTTTAAGTTTGTGTCCTCCGGTTCTTGTCCACGAGGGGAAACTTGCAACTTTCAACATGACATGGATGCAAGAGAACAATCTTTGAGAGGTGTTTGCTTCGATTTTATGAACAAAGGAAAGTGTGAAAGGGGTACTGATTGCAAATTTAAGCACAGCTTACAGGATGAAGGTGAAAGCAATTCTCACAAAAGACGCACTGGAAATGCTACCAGGTCGACAGAGTGCTGGTTTTGTTTGTCAAGCTCCAAAATAGAGTCTCATCTATTTATCAGCTTAGGGGAGCATTACTACTGTGCACTTGCTAAAGGCCCACTTGTTGAAGACCACGTATTGCTAATCCCTATTGGGCATTCACCCAATACCCTTTCTCTACCCTCCGAATGTGAGATGGAGCTCGGCAAATTCCAGGATAGTCTTAAAAAGTTTTATAAGAAACAAGACAAGGATGTAGTTTTCTTTGAGTGGGCTTCAAAACGTTCAACTCATGCCAATCTTCAGGTCGTTCCTATTCCGTCAGCCAAAGCAGCTAGTGTTCAAAAATTTTTTCATTTAGCTGCTGACAGGTTCAAATTCAAATTTACGACCACAAAATTCAGTAACAGTTCTGATGGGAGAAAATCGTTGAGGACCCAGTTTGATAGAAATTTTAGCTTCTTCTATGCTGAGCTCCCTGATGGTACAGTCCTATCACATTTAATTGAGGAGAGCGAGAATTTCCTACCCCAATTTGGACGTGAGGTTATGGCAGGTTTATTGAACAAGGCTAACAGGGCTGATTGGAGGAGGTGTACAGATAGCAAAGAAGAGGAAACGAATATGGTAGAAAAATTCAAGAGTAGATTCGAAGAATTTGATCCAAATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CwfJ_C_1 CwfJ_C_2 zf-CCCH

Protein Analysis

598

Amino Acids

66.51

Weight (kDa)

7.84

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	307 - 333	2.1e-06	DUS3L CCCH zinc finger domain
CwfJ_C_1	PF04677	375 - 492	9.5e-38	Protein similar to CwfJ C-terminal
CwfJ_C_2	PF04676	509 - 595	8.7e-20	Protein similar to CwfJ C-terminus 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56900 AT5G56900 AT5G56900
fragaria_vesca	FvH4_1g07540 FvH4_1g07540 FvH4_1g07540
malus_domestica	MD02G1080200.v1.1 MD15G1207600.v1.1
prunus_persica	Prupe.7G209200_v2.0.a1
pyrus_communis	pycom02g06370 pycom15g18400
rosa_chinensis	RchiOBHm_Chr2g0093421
rosa_laevigata	RLG00000016398
rosa_multiflora	Rmu_sc0004881.1_g000009 Rmu_sc0021911.1_g000011
rosa_roxburghii	Rroxscaffold_2G00148120
rosa_rugosa	Rorug02G0035700
rosa_samantha	Rh2AG081700 Rh2AG082300 Rh2BG083100 Rh2CG085100 Rh2DG080700 Rh2DG080800 Rh2DG081300
rosa_wichuraiana	Rw2G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1359
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc36I	ACCTGC	2 cut(s)	479, 1667
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	1145
AccII	CGCG	2 cut(s)	104, 613
AciI	CCGC	4 cut(s)	27, 140, 248, 652
AclI	AACGTT	1 cut(s)	1405
AclWI	GGATC	3 cut(s)	446, 467, 1778
AcoI	YGGCCR	2 cut(s)	87, 118
AcuI	CTGAAG	2 cut(s)	468, 1409
AcyI	GRCGYC	2 cut(s)	222, 228
AfaI	GTAC	5 cut(s)	493, 866, 1063, 1609, 1720
AfiI	CCNNNNNNNGG	3 cut(s)	348, 891, 1658
AflIII	ACRYGT	2 cut(s)	102, 786
AhdI	GACNNNNNGTC	1 cut(s)	411
AjiI	CACGTC	1 cut(s)	1664
AjnI	CCWGG	4 cut(s)	454, 508, 1139, 1335
Alw21I	GWGCWC	3 cut(s)	1228, 1326, 1599
Alw26I	GTCTC	5 cut(s)	76, 678, 783, 886, 1191
Alw44I	GTGCAC	1 cut(s)	1224
AlwI	GGATC	3 cut(s)	446, 467, 1778
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	5 cut(s)	87, 118, 175, 180, 1237
ApaLI	GTGCAC	1 cut(s)	1224
ApeKI	GCWGC	5 cut(s)	52, 303, 557, 1454, 1484
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AspLEI	GCGC	3 cut(s)	230, 613, 709
AspS9I	GGNCC	5 cut(s)	92, 142, 180, 1238, 1557
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	5 cut(s)	151, 331, 640, 1112, 1275
AsuII	TTCGAA	1 cut(s)	1773
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	3 cut(s)	92, 142, 1557
BaeGI	GKGCMC	1 cut(s)	1228
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	1326, 1599
BauI	CACGAG	1 cut(s)	960
BbsI	GAAGAC	1 cut(s)	1257
Bbv12I	GWGCWC	3 cut(s)	1228, 1326, 1599
BbvI	GCAGC	5 cut(s)	64, 315, 569, 1466, 1471
BccI	CCATC	4 cut(s)	908, 1312, 1532, 1598
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	4 cut(s)	456, 510, 1141, 1337
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	5 cut(s)	76, 678, 783, 886, 1191
BfaI	CTAG	2 cut(s)	834, 1458
BfoI	RGCGCY	1 cut(s)	231
BfuAI	ACCTGC	2 cut(s)	479, 1667
BisI	GCNGC	7 cut(s)	28, 53, 249, 304, 558, 1455, 1485
BlpI	GCTNAGC	1 cut(s)	1593
BlsI	GCNGC	7 cut(s)	29, 54, 250, 305, 559, 1456, 1486
BmcAI	AGTACT	1 cut(s)	866
Bme1390I	CCNGG	5 cut(s)	179, 456, 510, 1141, 1337
Bme18I	GGWCC	3 cut(s)	92, 142, 1557
BmeRI	GACNNNNNGTC	1 cut(s)	411
BmeT110I	CYCGRG	1 cut(s)	262
BmgBI	CACGTC	1 cut(s)	1664
BmgT120I	GGNCC	5 cut(s)	92, 142, 180, 1238, 1557
BmiI	GGNNCC	6 cut(s)	6, 94, 229, 269, 514, 1559
BmrFI	CCNGG	5 cut(s)	179, 456, 510, 1141, 1337
BmrI	ACTGGG	1 cut(s)	1555
BmsI	GCATC	4 cut(s)	418, 625, 734, 985
BmuI	ACTGGG	1 cut(s)	1555
BpiI	GAAGAC	1 cut(s)	1257
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	5 cut(s)	531, 654, 705, 889, 930
Bpu10I	CCTNAGC	1 cut(s)	1204
Bpu1102I	GCTNAGC	1 cut(s)	1593
Bpu14I	TTCGAA	1 cut(s)	1773
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	1258
BsaHI	GRCGYC	2 cut(s)	222, 228
BsaJI	CCNNGG	4 cut(s)	255, 271, 346, 455
BsaWI	WCCGGW	1 cut(s)	947
BsaXI	ACNNNNNCTCC	4 cut(s)	763, 793, 1702, 1732
Bsc4I	CCNNNNNNNGG	3 cut(s)	348, 891, 1658
Bse118I	RCCGGY	2 cut(s)	89, 161
Bse1I	ACTGG	6 cut(s)	121, 320, 671, 872, 1132, 1561
Bse3DI	GCAATG	1 cut(s)	431
BseBI	CCWGG	4 cut(s)	456, 510, 1141, 1337
BseDI	CCNNGG	4 cut(s)	255, 271, 346, 455
BseGI	GGATG	4 cut(s)	424, 1000, 1099, 1381
BseLI	CCNNNNNNNGG	3 cut(s)	348, 891, 1658
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	2 cut(s)	510, 1584
BseNI	ACTGG	6 cut(s)	121, 320, 671, 872, 1132, 1561
BseRI	GAGGAG	2 cut(s)	1646, 1726
BseSI	GKGCMC	1 cut(s)	1228
BseX3I	CGGCCG	1 cut(s)	87
BseXI	GCAGC	5 cut(s)	64, 315, 569, 1466, 1471
Bsh1236I	CGCG	2 cut(s)	104, 613
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	5 cut(s)	89, 120, 177, 182, 1239
BshNI	GGYRCC	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	3 cut(s)	1228, 1326, 1599
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	5 cut(s)	39, 90, 162, 178, 948
BslFI	GGGAC	2 cut(s)	78, 418
BslI	CCNNNNNNNGG	3 cut(s)	348, 891, 1658
BsmAI	GTCTC	5 cut(s)	76, 678, 783, 886, 1191
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	78, 418
BsmI	GAATGC	1 cut(s)	1279
BsnI	GGCC	5 cut(s)	89, 120, 177, 182, 1239
BsoBI	CYCGRG	1 cut(s)	262
Bsp119I	TTCGAA	1 cut(s)	1773
Bsp1286I	GDGCHC	3 cut(s)	1228, 1326, 1599
Bsp1407I	TGTACA	1 cut(s)	1718
Bsp143I	GATC	4 cut(s)	451, 459, 564, 1783
Bsp1720I	GCTNAGC	1 cut(s)	1593
BspACI	CCGC	4 cut(s)	27, 140, 248, 652
BspANI	GGCC	5 cut(s)	89, 120, 177, 182, 1239
BspCNI	CTCAG	2 cut(s)	511, 1585
BspFNI	CGCG	2 cut(s)	104, 613
BspLI	GGNNCC	6 cut(s)	6, 94, 229, 269, 514, 1559
BspMI	ACCTGC	2 cut(s)	479, 1667
BspPI	GGATC	3 cut(s)	446, 467, 1778
BspQI	GCTCTTC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	1773
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	431
BsrFI	RCCGGY	2 cut(s)	89, 161
BsrGI	TGTACA	1 cut(s)	1718
BsrI	ACTGG	6 cut(s)	121, 320, 671, 872, 1132, 1561
BssAI	RCCGGY	2 cut(s)	89, 161
BssECI	CCNNGG	4 cut(s)	255, 271, 346, 455
BssMI	GATC	4 cut(s)	451, 459, 564, 1783
BssNI	GRCGYC	2 cut(s)	222, 228
BssSI	CACGAG	1 cut(s)	960
BssT1I	CCWWGG	2 cut(s)	255, 271
Bst2BI	CACGAG	1 cut(s)	960
Bst2UI	CCWGG	4 cut(s)	456, 510, 1141, 1337
Bst4CI	ACNGT	7 cut(s)	399, 413, 544, 864, 1223, 1532, 1612
Bst6I	CTCTTC	2 cut(s)	62, 1728
BstACI	GRCGYC	2 cut(s)	222, 228
BstAUI	TGTACA	1 cut(s)	1718
BstBAI	YACGTR	1 cut(s)	1258
BstBI	TTCGAA	1 cut(s)	1773
BstC8I	GCNNGC	2 cut(s)	438, 589
BstDEI	CTNAG	4 cut(s)	234, 519, 1204, 1593
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	4 cut(s)	424, 1000, 1099, 1381
BstFNI	CGCG	2 cut(s)	104, 613
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	3 cut(s)	230, 613, 709
BstKTI	GATC	4 cut(s)	454, 462, 567, 1786
BstMAI	GTCTC	5 cut(s)	76, 678, 783, 886, 1191
BstMBI	GATC	4 cut(s)	451, 459, 564, 1783
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	6 cut(s)	219, 437, 554, 597, 1454, 1700
BstNI	CCWGG	4 cut(s)	456, 510, 1141, 1337
BstNSI	RCATGY	3 cut(s)	604, 647, 790
BstSCI	CCNGG	5 cut(s)	177, 454, 508, 1139, 1335
BstSLI	GKGCMC	1 cut(s)	1228
BstUI	CGCG	2 cut(s)	104, 613
BstV1I	GCAGC	5 cut(s)	64, 315, 569, 1466, 1471
BstV2I	GAAGAC	1 cut(s)	1257
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BstZI	CGGCCG	1 cut(s)	87
BsuRI	GGCC	5 cut(s)	89, 120, 177, 182, 1239
BtgI	CCRYGG	1 cut(s)	346
BtrI	CACGTC	1 cut(s)	1664
BtsCI	GGATG	4 cut(s)	424, 1000, 1099, 1381
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	3 cut(s)	334, 531, 1125
BveI	ACCTGC	2 cut(s)	479, 1667
Cac8I	GCNNGC	2 cut(s)	438, 589
CfoI	GCGC	3 cut(s)	230, 613, 709
Cfr10I	RCCGGY	2 cut(s)	89, 161
Cfr13I	GGNCC	5 cut(s)	92, 142, 180, 1238, 1557
CseI	GACGC	4 cut(s)	103, 110, 211, 1131
CsiI	ACCWGGT	1 cut(s)	1139
Csp6I	GTAC	5 cut(s)	492, 865, 1062, 1608, 1719
CviAII	CATG	9 cut(s)	581, 601, 644, 704, 787, 902, 986, 991, 1415
CviQI	GTAC	5 cut(s)	492, 865, 1062, 1608, 1719
DdeI	CTNAG	4 cut(s)	234, 519, 1204, 1593
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	4 cut(s)	453, 461, 566, 1785
DpnII	GATC	4 cut(s)	451, 459, 564, 1783
DrdI	GACNNNNNNGTC	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	411
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	87, 118
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	62, 1728
Eam1105I	GACNNNNNGTC	1 cut(s)	411
EarI	CTCTTC	2 cut(s)	62, 1728
EciI	GGCGGA	1 cut(s)	155
Ecl136II	GAGCTC	2 cut(s)	1324, 1597
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	255, 271
Eco24I	GRGCYC	2 cut(s)	1326, 1599
Eco47I	GGWCC	3 cut(s)	92, 142, 1557
Eco52I	CGGCCG	1 cut(s)	87
Eco53kI	GAGCTC	2 cut(s)	1324, 1597
Eco57I	CTGAAG	2 cut(s)	468, 1409
Eco88I	CYCGRG	1 cut(s)	262
EcoICRI	GAGCTC	2 cut(s)	1324, 1597
EcoO109I	RGGNCCY	1 cut(s)	1557
EcoRII	CCWGG	4 cut(s)	454, 508, 1139, 1335
EcoT14I	CCWWGG	2 cut(s)	255, 271
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	2 cut(s)	1326, 1599
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	2 cut(s)	255, 271
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	9 cut(s)	584, 604, 647, 707, 790, 905, 989, 994, 1418
FalI	AAGNNNNNCTT	6 cut(s)	41, 73, 1070, 1102, 1227, 1259
FaqI	GGGAC	2 cut(s)	78, 418
FatI	CATG	9 cut(s)	580, 600, 643, 703, 786, 901, 985, 990, 1414
FauI	CCCGC	1 cut(s)	659
FblI	GTMKAC	1 cut(s)	1145
Fnu4HI	GCNGC	7 cut(s)	28, 53, 249, 304, 558, 1455, 1485
FokI	GGATG	4 cut(s)	431, 1007, 1106, 1388
FriOI	GRGCYC	2 cut(s)	1326, 1599
Fsp4HI	GCNGC	7 cut(s)	28, 53, 249, 304, 558, 1455, 1485
FspBI	CTAG	2 cut(s)	834, 1458
GlaI	GCGC	3 cut(s)	229, 612, 708
GluI	GCNGC	7 cut(s)	28, 53, 249, 304, 558, 1455, 1485
GsuI	CTGGAG	5 cut(s)	531, 654, 705, 889, 930
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	5 cut(s)	89, 120, 177, 182, 1239
HapII	CCGG	5 cut(s)	39, 90, 162, 178, 948
HgaI	GACGC	4 cut(s)	103, 110, 211, 1131
HhaI	GCGC	3 cut(s)	230, 613, 709
Hin1I	GRCGYC	2 cut(s)	222, 228
Hin1II	CATG	9 cut(s)	584, 604, 647, 707, 790, 905, 989, 994, 1418
Hin6I	GCGC	3 cut(s)	228, 611, 707
HinP1I	GCGC	3 cut(s)	228, 611, 707
HincII	GTYRAC	4 cut(s)	79, 395, 466, 1146
HindII	GTYRAC	4 cut(s)	79, 395, 466, 1146
HinfI	GANTC	9 cut(s)	66, 134, 187, 260, 536, 851, 857, 1184, 1770
HpaII	CCGG	5 cut(s)	39, 90, 162, 178, 948
HphI	GGTGA	5 cut(s)	151, 331, 640, 1112, 1275
Hpy166II	GTNNAC	8 cut(s)	79, 159, 395, 466, 959, 1146, 1226, 1719
Hpy188I	TCNGA	7 cut(s)	388, 499, 520, 850, 856, 1309, 1537
Hpy188III	TCNNGA	5 cut(s)	131, 196, 416, 743, 1762
Hpy8I	GTNNAC	8 cut(s)	79, 159, 395, 466, 959, 1146, 1226, 1719
Hpy99I	CGWCG	4 cut(s)	104, 119, 155, 227
HpyAV	CCTTC	6 cut(s)	106, 167, 289, 352, 812, 1091
HpyCH4III	ACNGT	7 cut(s)	399, 413, 544, 864, 1223, 1532, 1612
HpyCH4IV	ACGT	3 cut(s)	1257, 1405, 1663
HpyF10VI	GCNNNNNNNGC	6 cut(s)	219, 437, 554, 597, 1454, 1700
HpyF3I	CTNAG	4 cut(s)	234, 519, 1204, 1593
HpySE526I	ACGT	3 cut(s)	1257, 1405, 1663
Hsp92I	GRCGYC	2 cut(s)	222, 228
Hsp92II	CATG	9 cut(s)	584, 604, 647, 707, 790, 905, 989, 994, 1418
HspAI	GCGC	3 cut(s)	228, 611, 707
KasI	GGCGCC	1 cut(s)	227
Kzo9I	GATC	4 cut(s)	451, 459, 564, 1783
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	8 cut(s)	10, 512, 673, 905, 1178, 1210, 1321, 1602
Lsp1109I	GCAGC	5 cut(s)	64, 315, 569, 1466, 1471
LweI	GCATC	4 cut(s)	418, 625, 734, 985
MabI	ACCWGGT	1 cut(s)	1139
MaeI	CTAG	2 cut(s)	834, 1458
MaeII	ACGT	3 cut(s)	1257, 1405, 1663
MaeIII	GTNAC	3 cut(s)	475, 646, 1526
MalI	GATC	4 cut(s)	453, 461, 566, 1785
MboI	GATC	4 cut(s)	451, 459, 564, 1783
MboII	GAAGA	9 cut(s)	49, 375, 461, 692, 1262, 1415, 1576, 1745, 1787
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	3 cut(s)	1228, 1326, 1599
MluI	ACGCGT	1 cut(s)	102
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	5 cut(s)	75, 128, 254, 530, 1193
MmeI	TCCRAC	1 cut(s)	655
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	5 cut(s)	750, 933, 1077, 1347, 1625
MspI	CCGG	5 cut(s)	39, 90, 162, 178, 948
MspR9I	CCNGG	5 cut(s)	179, 456, 510, 1141, 1337
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	1279
MvaI	CCWGG	4 cut(s)	456, 510, 1141, 1337
MvnI	CGCG	2 cut(s)	104, 613
MwoI	GCNNNNNNNGC	6 cut(s)	219, 437, 554, 597, 1454, 1700
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	4 cut(s)	451, 459, 564, 1783
NlaIII	CATG	9 cut(s)	584, 604, 647, 707, 790, 905, 989, 994, 1418
NlaIV	GGNNCC	6 cut(s)	6, 94, 229, 269, 514, 1559
NmeAIII	GCCGAG	4 cut(s)	116, 208, 586, 1305
NmuCI	GTSAC	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	3 cut(s)	604, 647, 790
NspV	TTCGAA	1 cut(s)	1773
PciI	ACATGT	1 cut(s)	786
PciSI	GCTCTTC	1 cut(s)	62
PctI	GAATGC	1 cut(s)	1279
PfeI	GAWTC	4 cut(s)	187, 851, 857, 1770
PfoI	TCCNGGA	2 cut(s)	508, 1335
PkrI	GCNGC	7 cut(s)	29, 54, 250, 305, 559, 1456, 1486
PleI	GAGTC	5 cut(s)	74, 128, 254, 530, 1192
PluTI	GGCGCC	1 cut(s)	231
PpsI	GAGTC	5 cut(s)	74, 128, 254, 530, 1192
Ppu21I	YACGTR	1 cut(s)	1258
PpuMI	RGGWCCY	1 cut(s)	1557
PscI	ACATGT	1 cut(s)	786
PsiI	TTATAA	1 cut(s)	1359
Psp124BI	GAGCTC	2 cut(s)	1326, 1599
Psp1406I	AACGTT	1 cut(s)	1405
Psp5II	RGGWCCY	1 cut(s)	1557
Psp6I	CCWGG	4 cut(s)	454, 508, 1139, 1335
PspGI	CCWGG	4 cut(s)	454, 508, 1139, 1335
PspN4I	GGNNCC	6 cut(s)	6, 94, 229, 269, 514, 1559
PspPI	GGNCC	5 cut(s)	92, 142, 180, 1238, 1557
PspPPI	RGGWCCY	1 cut(s)	1557
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	5 cut(s)	493, 866, 1063, 1609, 1720
RsaNI	GTAC	5 cut(s)	492, 865, 1062, 1608, 1719
SacI	GAGCTC	2 cut(s)	1326, 1599
SalI	GTCGAC	1 cut(s)	1144
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	5 cut(s)	750, 933, 1077, 1347, 1625
SatI	GCNGC	7 cut(s)	28, 53, 249, 304, 558, 1455, 1485
Sau3AI	GATC	4 cut(s)	451, 459, 564, 1783
Sau96I	GGNCC	5 cut(s)	92, 142, 180, 1238, 1557
ScaI	AGTACT	1 cut(s)	866
SchI	GAGTC	5 cut(s)	75, 128, 254, 530, 1193
ScrFI	CCNGG	5 cut(s)	179, 456, 510, 1141, 1337
SduI	GDGCHC	3 cut(s)	1228, 1326, 1599
SexAI	ACCWGGT	1 cut(s)	1139
SfaNI	GCATC	4 cut(s)	418, 625, 734, 985
SfoI	GGCGCC	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	1773
SinI	GGWCC	3 cut(s)	92, 142, 1557
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	4 cut(s)	27, 140, 248, 652
SspDI	GGCGCC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	834, 1458
SstI	GAGCTC	2 cut(s)	1326, 1599
StyD4I	CCNGG	5 cut(s)	177, 454, 508, 1139, 1335
StyI	CCWWGG	2 cut(s)	255, 271
TaaI	ACNGT	7 cut(s)	399, 413, 544, 864, 1223, 1532, 1612
TaiI	ACGT	3 cut(s)	1260, 1408, 1666
TaqI	TCGA	7 cut(s)	99, 150, 171, 633, 1029, 1145, 1773
TaqII	GACCGA	1 cut(s)	64
TatI	WGTACW	2 cut(s)	864, 1718
TauI	GCSGC	2 cut(s)	30, 251
TfiI	GAWTC	4 cut(s)	187, 851, 857, 1770
Tru1I	TTAA	5 cut(s)	750, 933, 1077, 1347, 1625
Tru9I	TTAA	5 cut(s)	750, 933, 1077, 1347, 1625
TscAI	CASTG	3 cut(s)	334, 538, 1132
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	5 cut(s)	52, 303, 557, 1454, 1484
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	6 cut(s)	196, 646, 692, 1052, 1110, 1466
TspGWI	ACGGA	1 cut(s)	1431
TspRI	CASTG	3 cut(s)	334, 538, 1132
VneI	GTGCAC	1 cut(s)	1224
VpaK11BI	GGWCC	3 cut(s)	92, 142, 1557
XceI	RCATGY	3 cut(s)	604, 647, 790
XmiI	GTMKAC	1 cut(s)	1145
XspI	CTAG	2 cut(s)	834, 1458
ZrmI	AGTACT	1 cut(s)	866
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.