Rh2DG080700

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007131
Physical Location & Seq
Forward (+)
6307946 .. 6309708
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG080700.1

Sequence Viewer

Length: 480 bp
ATGAGGATGAGAGGGTTCATAATCGGTGGTATCATATTGCAGGCACCAAAGGCATTTTCTATGCACGTGAGCCTTACTCCAATGTACATGCTGCATGTGCATATCACCCGCTTCATAGGTCTTGCTCCAGTTGGAAACAAAGACAAGCAGAAATTTCTTCATGCGCTTTCTCCTACTCCAGCATCTACTATGTCTGCTCTTGAAATTAAGACAAAATCGCCAAATACTACCTTGTCTCCATACATGTATATCGAGGGAACAGCTAATGCAAAAGAAGGTGCAAAGAGGTCTAGTGATAGTGTTTCTGATTCTGATTCACAGTACTGGAGATATGATGTCTCCCAAAAAAGGCAGAAACATAGAGCTGGAGATGGTAATAGGCTGTGCTTTAAGTTTGTATCCTCCGGTTCTTGTCCACGAGGGGAAACTTGCAACTTTCAACATGACATGGATGCAAGACAGCAAGAGAACAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CwfJ_C_1 CwfJ_C_2 zf-CCCH

Protein Analysis

159

Amino Acids

17.8

Weight (kDa)

9.6

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_DUS3L PF25585 126 - 152 3.7e-07 DUS3L CCCH zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 43
AciI CCGC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 152
AcvI CACGTG 1 cut(s) 67
AfaI GTAC 2 cut(s) 86, 323
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 2 cut(s) 203, 440
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
AluBI AGCT 2 cut(s) 263, 365
AluI AGCT 2 cut(s) 263, 365
Alw26I GTCTC 2 cut(s) 240, 343
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 152
AspLEI GCGC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 97
BanI GGYRCC 1 cut(s) 43
BauI CACGAG 1 cut(s) 417
BbrPI CACGTG 1 cut(s) 67
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 365
BciVI GTATCC 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 240, 343
BfaI CTAG 1 cut(s) 291
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
BmcAI AGTACT 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 2 cut(s) 191, 442
BplI GAGNNNNNCTC 2 cut(s) 61, 93
BpmI CTGGAG 4 cut(s) 111, 162, 346, 387
BsaAI YACGTR 1 cut(s) 67
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 2 cut(s) 128, 329
BseGI GGATG 2 cut(s) 12, 457
BseLI CCNNNNNNNGG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 128, 329
BseXI GCAGC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 240, 343
Bsp1407I TGTACA 1 cut(s) 84
BspACI CCGC 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 2 cut(s) 128, 329
BssSI CACGAG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 321
BstAUI TGTACA 1 cut(s) 84
BstBAI YACGTR 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 42
BstF5I GGATG 2 cut(s) 12, 457
BstHHI GCGC 1 cut(s) 166
BstMAI GTCTC 2 cut(s) 240, 343
BstMWI GCNNNNNNNGC 2 cut(s) 50, 97
BstNSI RCATGY 3 cut(s) 91, 98, 247
BstV1I GCAGC 1 cut(s) 78
BsuI GTATCC 1 cut(s) 409
BtsCI GGATG 2 cut(s) 12, 457
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 1 cut(s) 166
Csp6I GTAC 2 cut(s) 85, 322
CviAII CATG 6 cut(s) 88, 95, 161, 244, 443, 448
CviJI RGCY 4 cut(s) 72, 263, 365, 382
CviKI_1 RGCY 4 cut(s) 72, 263, 365, 382
CviQI GTAC 2 cut(s) 85, 322
Eco72I CACGTG 1 cut(s) 67
FaeI CATG 6 cut(s) 91, 98, 164, 247, 446, 451
FatI CATG 6 cut(s) 87, 94, 160, 243, 442, 447
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 2 cut(s) 19, 464
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 92
GsuI CTGGAG 4 cut(s) 111, 162, 346, 387
HapII CCGG 1 cut(s) 405
HhaI GCGC 1 cut(s) 166
Hin1II CATG 6 cut(s) 91, 98, 164, 247, 446, 451
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 2 cut(s) 308, 314
HpaII CCGG 1 cut(s) 405
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 307, 313
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 8 cut(s) 40, 64, 94, 100, 269, 281, 432, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 97
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 6 cut(s) 91, 98, 164, 247, 446, 451
HspAI GCGC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 26, 141, 192, 310, 351, 418
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 2 cut(s) 191, 442
MaeI CTAG 1 cut(s) 291
MaeII ACGT 1 cut(s) 66
MboII GAAGA 1 cut(s) 149
MluCI AATT 2 cut(s) 152, 204
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 5 cut(s) 5, 247, 279, 412, 413
MseI TTAA 2 cut(s) 207, 390
MspI CCGG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 50, 97
NlaIII CATG 6 cut(s) 91, 98, 164, 247, 446, 451
NlaIV GGNNCC 1 cut(s) 45
NspI RCATGY 3 cut(s) 91, 98, 247
PciI ACATGT 1 cut(s) 243
PfeI GAWTC 2 cut(s) 308, 314
PkrI GCNGC 1 cut(s) 93
PmaCI CACGTG 1 cut(s) 67
PmlI CACGTG 1 cut(s) 67
Ppu21I YACGTR 1 cut(s) 67
PscI ACATGT 1 cut(s) 243
PspCI CACGTG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 45
RsaI GTAC 2 cut(s) 86, 323
RsaNI GTAC 2 cut(s) 85, 322
SaqAI TTAA 2 cut(s) 207, 390
SatI GCNGC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 323
SetI ASST 7 cut(s) 69, 121, 233, 265, 280, 290, 367
SfaNI GCATC 2 cut(s) 191, 442
Sse9I AATT 2 cut(s) 152, 204
SsiI CCGC 1 cut(s) 109
SspMI CTAG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 252
TasI AATT 2 cut(s) 152, 204
TatI WGTACW 2 cut(s) 84, 321
TfiI GAWTC 2 cut(s) 308, 314
Tru1I TTAA 2 cut(s) 207, 390
Tru9I TTAA 2 cut(s) 207, 390
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 7, 103, 149
XapI RAATTY 1 cut(s) 152
XceI RCATGY 3 cut(s) 91, 98, 247
XspI CTAG 1 cut(s) 291
ZrmI AGTACT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.