Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007131

Physical Location & Seq

Genomic Coordinates Reverse (-)

6313595 .. 6317505

Gene Structure 3911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1080200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

ATGGCTCCCCCCAAAATTCTGCTCTCCGGCGACGTTTCAGGCAACCTAAAGCAGCTCTTCAAACGCGTCGTTTCGGTCAACAAATCGGCGGCGGGTCCATTCGACGCGCTGCTCTGCGTGGGCCAGTTCTTCCCCGACTCGGCGGACCAGCTCGACGAGTTCAACGATTACATCGAAGGCCGGGCCCAAATTCCTCTCCCGACCTACTTCATCGGCGACTACGGCGTCGGCGCCGCCAAGGTCCTCCTAGCTGCGACGAGAGACGCCGGCAACCAAGGCTTCAAATTGGACGGCTTGAAGATTTGCAACAGCCTCTACTGGTTGAAAGGCAGTGGCAAGTTCACGCTCCACGGGTTATCTGTGGCATATTTATCTGGTCAGCAATCTTCGGATAGCCAACAGTTTGGGACGTATAATCAGGACGATGTTGATGTATTGCGAGCGATTGCTGAGGAGCCAGGAATTATTGACTTCGGGATCACTAATAGAGCAAATATATCTGATGCTCCCTCTGGAGTTTCCGAGCCTTTTGGCACTGACAATATTGTGGCAGAGTTAGTAGCCGAGATCAAGCCACGGTTCGTCCTCTGTGGTAGCTATCATATTGCAGGCACGAAAGGCGTGTTCTATGCACGTGAACCTTACTCTAACGTTGATGCTGTGCATGTCACACGCTTCTTGGGTCTTGCTCCAGTAGGAAACAAAGATAAGCAGAAATTCATTCATGCGCTTTCTCCTACTCCAGCATCTACAATGTCTGCTATTGAGATTAGGGCGAAGTCGACGACCACTACCTTATCTCCATACACATATGAGGAGAAAACAGCTCATTCAATAGAAGCTGGAAAGAGGTCTAGCGATAGTATTTCTGATTCACAGTACTGGAGATACGATGTCCCACAAAAAAGGCAGAAACATGGAGATGGTAATAGGCTGTGTTTTAAGTTTGTATCATCTGGATCTTGTCCTCGAGGGGAAAGTTGCAACTTTCAACATGACGTAGATGCAAGAGAACAATCGTTGAGAGGTGTTTGTTTCGATTTTATGAACAAAGGTAAATGTGAAAGGGGTCCAGAGTGCAAATTTAAGCACAGCTTACAGGATGAAGGTGACAGCAATTCTCAACCGGGACGTGGATCTGGAAATGCTAACAGAAACAGGTCAACAGAGTGTTGGTTTTGTTTGTCAAGCCCCAAAGTAGAATCACATCTCATTATCAGCATAGGGGAGCATTACTATTGTGCCCTTGCTAAAGGCCCGCTTGTTGAAGATCACGTATTGCTAATTCCTATAGGTCATTCACCAAATACCGTTTCTCTACCCTCAGAATGTGACATTGAGCTCGATAAGTTTCAGAATGCTCTGAAGAAGTATTATAACAAACAAGGAAAGGAAGTTGTTTTCTTTGAATGGGCTTCGAAACGTACGACTCATGCTAATCTTCAGGTCGTTCCTGTTCCTTCAGCCAAAGCAGCTGCCCTTAAAAATATATTTAACTTAGCTGCTGAAAGGCAGGGGTTCAAGTTCACAACCATGAAATCCAGTAACAATTATGATGGGAGAACATTGTTAGGGGAACAGTTCGACAGAAATTTTAGTTTCTTCTATGTTCAGCTCCCTGATGGTACAATCCTATCACATTCGATTGAAGAGAATGAGAACTTCTTACCCCAATTTGGACGCCAGGTTATGGCAGGTTTGTTGAAGAAGGCCGACAGGGATGATTGGAAGAATTGTACAGATAGCAAAGAAGAGGAAACCAAGATGGTGGAAGATTTCAAGAGTGGATTTGGAGAATTCGATCCAAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CwfJ_C_1 CwfJ_C_2 zf-CCCH

Protein Analysis

605

Amino Acids

66.82

Weight (kDa)

6.3

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	310 - 336	1.1e-06	DUS3L CCCH zinc finger domain
CwfJ_C_1	PF04677	383 - 498	1e-39	Protein similar to CwfJ C-terminal
CwfJ_C_2	PF04676	523 - 601	5.7e-17	Protein similar to CwfJ C-terminus 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56900 AT5G56900 AT5G56900
fragaria_vesca	FvH4_1g07540 FvH4_1g07540 FvH4_1g07540
malus_domestica	MD02G1080200.v1.1 MD15G1207600.v1.1
prunus_persica	Prupe.7G209200_v2.0.a1
pyrus_communis	pycom02g06370 pycom15g18400
rosa_chinensis	RchiOBHm_Chr2g0093421
rosa_laevigata	RLG00000016398
rosa_multiflora	Rmu_sc0004881.1_g000009 Rmu_sc0021911.1_g000011
rosa_roxburghii	Rroxscaffold_2G00148120
rosa_rugosa	Rorug02G0035700
rosa_samantha	Rh2AG081700 Rh2AG082300 Rh2BG083100 Rh2CG085100 Rh2DG080700 Rh2DG080800 Rh2DG081300
rosa_wichuraiana	Rw2G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1377
AasI	GACNNNNNNGTC	1 cut(s)	224
AbsI	CCTCGAGG	1 cut(s)	969
Acc36I	ACCTGC	1 cut(s)	1685
AccB1I	GGYRCC	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	1690
AccI	GTMKAC	1 cut(s)	782
AccII	CGCG	2 cut(s)	66, 107
AciI	CCGC	5 cut(s)	89, 92, 143, 234, 1259
AclI	AACGTT	1 cut(s)	651
AclWI	GGATC	4 cut(s)	485, 967, 1144, 1796
AcsI	RAATTY	6 cut(s)	15, 189, 716, 1082, 1591, 1796
AcuI	CTGAAG	3 cut(s)	1385, 1427, 1446
AcvI	CACGTG	1 cut(s)	635
AcyI	GRCGYC	4 cut(s)	225, 231, 264, 1681
AfaI	GTAC	4 cut(s)	881, 1426, 1627, 1738
AfiI	CCNNNNNNNGG	4 cut(s)	139, 1133, 1676, 1690
AflIII	ACRYGT	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	1133
AjnI	CCWGG	2 cut(s)	457, 1683
AjuI	GAANNNNNNNTTGG	2 cut(s)	1297, 1329
Alw21I	GWGCWC	1 cut(s)	1344
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	4 cut(s)	485, 967, 1144, 1796
Ama87I	CYCGRG	1 cut(s)	969
AoxI	GGCC	5 cut(s)	121, 178, 183, 1255, 1710
ApaI	GGGCCC	1 cut(s)	187
ApeKI	GCWGC	6 cut(s)	52, 109, 251, 1472, 1475, 1502
ApoI	RAATTY	6 cut(s)	15, 189, 716, 1082, 1591, 1796
AspLEI	GCGC	3 cut(s)	109, 233, 730
AspS9I	GGNCC	8 cut(s)	95, 121, 145, 183, 184, 241, 1070, 1256
AsuC2I	CCSGG	2 cut(s)	182, 1128
AsuHPI	GGTGA	2 cut(s)	1121, 1293
AsuII	TTCGAA	1 cut(s)	1418
AvaI	CYCGRG	1 cut(s)	969
AvaII	GGWCC	4 cut(s)	95, 145, 241, 1070
BaeGI	GKGCMC	2 cut(s)	187, 1246
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	2 cut(s)	187, 1344
BbrPI	CACGTG	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	1344
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	6 cut(s)	64, 96, 238, 1462, 1484, 1489
BccI	CCATC	4 cut(s)	917, 1550, 1616, 1759
BceAI	ACGGC	2 cut(s)	238, 307
BciT130I	CCWGG	2 cut(s)	459, 1685
BcnI	CCSGG	2 cut(s)	182, 1128
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	2 cut(s)	248, 855
BfmI	CTRYAG	1 cut(s)	1290
BfoI	RGCGCY	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	1685
BisI	GCNGC	8 cut(s)	53, 90, 110, 234, 252, 1473, 1476, 1503
BlsI	GCNGC	8 cut(s)	54, 91, 111, 235, 253, 1474, 1477, 1504
BmcAI	AGTACT	1 cut(s)	881
Bme1390I	CCNGG	4 cut(s)	182, 459, 1128, 1685
Bme18I	GGWCC	4 cut(s)	95, 145, 241, 1070
BmeT110I	CYCGRG	1 cut(s)	969
BmgBI	CACGTC	1 cut(s)	1133
BmgT120I	GGNCC	8 cut(s)	95, 121, 145, 183, 184, 241, 1070, 1256
BmiI	GGNNCC	6 cut(s)	6, 96, 185, 232, 456, 1071
BmrFI	CCNGG	4 cut(s)	182, 459, 1128, 1685
BmsI	GCATC	4 cut(s)	493, 646, 755, 994
BpmI	CTGGAG	4 cut(s)	534, 675, 726, 904
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	1418
BpuMI	CCSGG	2 cut(s)	182, 1128
BsaAI	YACGTR	2 cut(s)	635, 1276
BsaHI	GRCGYC	4 cut(s)	225, 231, 264, 1681
BsaJI	CCNNGG	4 cut(s)	237, 274, 349, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	784, 814
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 1133, 1676, 1690
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	5 cut(s)	124, 323, 692, 887, 1542
BseBI	CCWGG	2 cut(s)	459, 1685
BseDI	CCNNGG	4 cut(s)	237, 274, 349, 575
BseGI	GGATG	2 cut(s)	1108, 1726
BseLI	CCNNNNNNNGG	4 cut(s)	139, 1133, 1676, 1690
BseMII	CTCAG	2 cut(s)	441, 1338
BseNI	ACTGG	5 cut(s)	124, 323, 692, 887, 1542
BseRI	GAGGAG	2 cut(s)	467, 830
BseSI	GKGCMC	2 cut(s)	187, 1246
BseXI	GCAGC	6 cut(s)	64, 96, 238, 1462, 1484, 1489
Bsh1236I	CGCG	2 cut(s)	66, 107
BshFI	GGCC	5 cut(s)	123, 180, 185, 1257, 1712
BshNI	GGYRCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	1344
BsiHKCI	CYCGRG	1 cut(s)	969
BsiSI	CCGG	4 cut(s)	27, 181, 267, 1127
BsiWI	CGTACG	1 cut(s)	1424
BslFI	GGGAC	3 cut(s)	421, 881, 1143
BslI	CCNNNNNNNGG	4 cut(s)	139, 1133, 1676, 1690
BsmAI	GTCTC	1 cut(s)	255
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	3 cut(s)	421, 881, 1143
BsmI	GAATGC	1 cut(s)	1363
BsnI	GGCC	5 cut(s)	123, 180, 185, 1257, 1712
BsoBI	CYCGRG	1 cut(s)	969
Bsp119I	TTCGAA	1 cut(s)	1418
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	3 cut(s)	187, 1246, 1344
Bsp1407I	TGTACA	1 cut(s)	1736
Bsp143I	GATC	6 cut(s)	477, 567, 959, 1136, 1270, 1801
BspACI	CCGC	5 cut(s)	89, 92, 143, 234, 1259
BspANI	GGCC	5 cut(s)	123, 180, 185, 1257, 1712
BspCNI	CTCAG	2 cut(s)	442, 1337
BspFNI	CGCG	2 cut(s)	66, 107
BspLI	GGNNCC	6 cut(s)	6, 96, 185, 232, 456, 1071
BspMI	ACCTGC	1 cut(s)	1685
BspPI	GGATC	4 cut(s)	485, 967, 1144, 1796
BspQI	GCTCTTC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	1418
BspT107I	GGYRCC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	266
BsrGI	TGTACA	1 cut(s)	1736
BsrI	ACTGG	5 cut(s)	124, 323, 692, 887, 1542
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	4 cut(s)	237, 274, 349, 575
BssMI	GATC	6 cut(s)	477, 567, 959, 1136, 1270, 1801
BssNI	GRCGYC	4 cut(s)	225, 231, 264, 1681
BssT1I	CCWWGG	2 cut(s)	237, 274
Bst2UI	CCWGG	2 cut(s)	459, 1685
Bst4CI	ACNGT	5 cut(s)	402, 579, 879, 1312, 1581
Bst6I	CTCTTC	3 cut(s)	62, 1644, 1746
BstACI	GRCGYC	4 cut(s)	225, 231, 264, 1681
BstAUI	TGTACA	1 cut(s)	1736
BstBAI	YACGTR	2 cut(s)	635, 1276
BstBI	TTCGAA	1 cut(s)	1418
BstC8I	GCNNGC	4 cut(s)	268, 441, 610, 1259
BstDEI	CTNAG	3 cut(s)	450, 1324, 1498
BstDSI	CCRYGG	2 cut(s)	349, 575
BstF5I	GGATG	2 cut(s)	1108, 1726
BstFNI	CGCG	2 cut(s)	66, 107
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	3 cut(s)	109, 233, 730
BstKTI	GATC	6 cut(s)	480, 570, 962, 1139, 1273, 1804
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	6 cut(s)	477, 567, 959, 1136, 1270, 1801
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 276, 618, 1472
BstNI	CCWGG	2 cut(s)	459, 1685
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	4 cut(s)	180, 457, 1126, 1683
BstSFI	CTRYAG	1 cut(s)	1290
BstSLI	GKGCMC	2 cut(s)	187, 1246
BstUI	CGCG	2 cut(s)	66, 107
BstV1I	GCAGC	6 cut(s)	64, 96, 238, 1462, 1484, 1489
BstX2I	RGATCY	2 cut(s)	959, 1136
BstXI	CCANNNNNNTGG	2 cut(s)	404, 1768
BstYI	RGATCY	2 cut(s)	959, 1136
BsuRI	GGCC	5 cut(s)	123, 180, 185, 1257, 1712
BtgI	CCRYGG	2 cut(s)	349, 575
BtrI	CACGTC	1 cut(s)	1133
BtsCI	GGATG	2 cut(s)	1108, 1726
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	2 cut(s)	337, 534
BveI	ACCTGC	1 cut(s)	1685
Cac8I	GCNNGC	4 cut(s)	268, 441, 610, 1259
CfoI	GCGC	3 cut(s)	109, 233, 730
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	8 cut(s)	95, 121, 145, 183, 184, 241, 1070, 1256
CseI	GACGC	5 cut(s)	55, 113, 214, 272, 1689
Csp6I	GTAC	4 cut(s)	880, 1425, 1626, 1737
CviAII	CATG	6 cut(s)	665, 725, 917, 995, 1433, 1534
CviQI	GTAC	4 cut(s)	880, 1425, 1626, 1737
DdeI	CTNAG	3 cut(s)	450, 1324, 1498
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	6 cut(s)	479, 569, 961, 1138, 1272, 1803
DpnII	GATC	6 cut(s)	477, 567, 959, 1136, 1270, 1801
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	3 cut(s)	62, 1644, 1746
EarI	CTCTTC	3 cut(s)	62, 1644, 1746
EciI	GGCGGA	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	1342
Eco130I	CCWWGG	2 cut(s)	237, 274
Eco24I	GRGCYC	2 cut(s)	187, 1344
Eco47I	GGWCC	4 cut(s)	95, 145, 241, 1070
Eco53kI	GAGCTC	1 cut(s)	1342
Eco57I	CTGAAG	3 cut(s)	1385, 1427, 1446
Eco72I	CACGTG	1 cut(s)	635
Eco88I	CYCGRG	1 cut(s)	969
EcoICRI	GAGCTC	1 cut(s)	1342
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	1796
EcoRII	CCWGG	2 cut(s)	457, 1683
EcoT14I	CCWWGG	2 cut(s)	237, 274
EcoT38I	GRGCYC	2 cut(s)	187, 1344
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	237, 274
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	6 cut(s)	668, 728, 920, 998, 1436, 1537
FalI	AAGNNNNNCTT	6 cut(s)	41, 73, 1079, 1111, 1245, 1277
FaqI	GGGAC	3 cut(s)	421, 881, 1143
FatI	CATG	6 cut(s)	664, 724, 916, 994, 1432, 1533
FauI	CCCGC	2 cut(s)	85, 1266
FauNDI	CATATG	1 cut(s)	811
FblI	GTMKAC	1 cut(s)	782
Fnu4HI	GCNGC	8 cut(s)	53, 90, 110, 234, 252, 1473, 1476, 1503
FokI	GGATG	2 cut(s)	1115, 1733
FriOI	GRGCYC	2 cut(s)	187, 1344
Fsp4HI	GCNGC	8 cut(s)	53, 90, 110, 234, 252, 1473, 1476, 1503
FspBI	CTAG	2 cut(s)	248, 855
GlaI	GCGC	3 cut(s)	108, 232, 729
GluI	GCNGC	8 cut(s)	53, 90, 110, 234, 252, 1473, 1476, 1503
GsuI	CTGGAG	4 cut(s)	534, 675, 726, 904
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	5 cut(s)	123, 180, 185, 1257, 1712
HapII	CCGG	4 cut(s)	27, 181, 267, 1127
HgaI	GACGC	5 cut(s)	55, 113, 214, 272, 1689
HhaI	GCGC	3 cut(s)	109, 233, 730
Hin1I	GRCGYC	4 cut(s)	225, 231, 264, 1681
Hin1II	CATG	6 cut(s)	668, 728, 920, 998, 1436, 1537
Hin6I	GCGC	3 cut(s)	107, 231, 728
HinP1I	GCGC	3 cut(s)	107, 231, 728
HincII	GTYRAC	3 cut(s)	79, 783, 1164
HindII	GTYRAC	3 cut(s)	79, 783, 1164
HinfI	GANTC	4 cut(s)	137, 872, 1202, 1429
HpaII	CCGG	4 cut(s)	27, 181, 267, 1127
HphI	GGTGA	2 cut(s)	1121, 1293
Hpy166II	GTNNAC	6 cut(s)	79, 342, 638, 783, 1164, 1527
Hpy188I	TCNGA	7 cut(s)	391, 502, 523, 871, 1327, 1356, 1365
Hpy188III	TCNNGA	8 cut(s)	199, 419, 475, 513, 957, 1073, 1140, 1780
Hpy8I	GTNNAC	6 cut(s)	79, 342, 638, 783, 1164, 1527
Hpy99I	CGWCG	7 cut(s)	35, 71, 107, 158, 230, 259, 787
HpyAV	CCTTC	4 cut(s)	170, 1100, 1470, 1702
HpyCH4III	ACNGT	5 cut(s)	402, 579, 879, 1312, 1581
HpyCH4IV	ACGT	8 cut(s)	33, 410, 634, 651, 999, 1132, 1275, 1423
HpyCH4V	TGCA	7 cut(s)	306, 608, 632, 664, 984, 1007, 1080
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 276, 618, 1472
HpyF3I	CTNAG	3 cut(s)	450, 1324, 1498
HpySE526I	ACGT	8 cut(s)	33, 410, 634, 651, 999, 1132, 1275, 1423
Hsp92I	GRCGYC	4 cut(s)	225, 231, 264, 1681
Hsp92II	CATG	6 cut(s)	668, 728, 920, 998, 1436, 1537
HspAI	GCGC	3 cut(s)	107, 231, 728
KasI	GGCGCC	1 cut(s)	230
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	6 cut(s)	477, 567, 959, 1136, 1270, 1801
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	7 cut(s)	10, 351, 454, 511, 694, 1228, 1620
Lsp1109I	GCAGC	6 cut(s)	64, 96, 238, 1462, 1484, 1489
LweI	GCATC	4 cut(s)	493, 646, 755, 994
MaeI	CTAG	2 cut(s)	248, 855
MaeII	ACGT	8 cut(s)	33, 410, 634, 651, 999, 1132, 1275, 1423
MaeIII	GTNAC	4 cut(s)	667, 1109, 1331, 1544
MalI	GATC	6 cut(s)	479, 569, 961, 1138, 1272, 1803
MboI	GATC	6 cut(s)	477, 567, 959, 1136, 1270, 1801
MflI	RGATCY	2 cut(s)	959, 1136
MhlI	GDGCHC	3 cut(s)	187, 1246, 1344
MluI	ACGCGT	1 cut(s)	64
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	131, 1423
MroNI	GCCGGC	1 cut(s)	266
MseI	TTAA	4 cut(s)	942, 1086, 1482, 1494
MslI	CAYNNNNRTG	2 cut(s)	921, 1532
MspA1I	CMGCKG	1 cut(s)	1475
MspI	CCGG	4 cut(s)	27, 181, 267, 1127
MspR9I	CCNGG	4 cut(s)	182, 459, 1128, 1685
Mva1269I	GAATGC	1 cut(s)	1363
MvaI	CCWGG	2 cut(s)	459, 1685
MvnI	CGCG	2 cut(s)	66, 107
MwoI	GCNNNNNNNGC	4 cut(s)	222, 276, 618, 1472
NaeI	GCCGGC	1 cut(s)	268
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	2 cut(s)	182, 1128
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	6 cut(s)	477, 567, 959, 1136, 1270, 1801
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	6 cut(s)	668, 728, 920, 998, 1436, 1537
NlaIV	GGNNCC	6 cut(s)	6, 96, 185, 232, 456, 1071
NmeAIII	GCCGAG	2 cut(s)	119, 589
NmuCI	GTSAC	3 cut(s)	667, 1109, 1331
NspI	RCATGY	1 cut(s)	668
NspV	TTCGAA	1 cut(s)	1418
PaeR7I	CTCGAG	1 cut(s)	969
PciSI	GCTCTTC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	3 cut(s)	162, 171, 1424
PctI	GAATGC	1 cut(s)	1363
PdiI	GCCGGC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	872, 1202
Pfl23II	CGTACG	1 cut(s)	1424
PflMI	CCANNNNNTGG	1 cut(s)	1690
PkrI	GCNGC	8 cut(s)	54, 91, 111, 235, 253, 1474, 1477, 1504
PleI	GAGTC	2 cut(s)	131, 1423
PluTI	GGCGCC	1 cut(s)	234
PmaCI	CACGTG	1 cut(s)	635
PmlI	CACGTG	1 cut(s)	635
PpsI	GAGTC	2 cut(s)	131, 1423
Ppu21I	YACGTR	2 cut(s)	635, 1276
PpuMI	RGGWCCY	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	1377
Psp124BI	GAGCTC	1 cut(s)	1344
Psp1406I	AACGTT	1 cut(s)	651
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	2 cut(s)	457, 1683
PspCI	CACGTG	1 cut(s)	635
PspGI	CCWGG	2 cut(s)	457, 1683
PspLI	CGTACG	1 cut(s)	1424
PspN4I	GGNNCC	6 cut(s)	6, 96, 185, 232, 456, 1071
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	8 cut(s)	95, 121, 145, 183, 184, 241, 1070, 1256
PspPPI	RGGWCCY	1 cut(s)	241
PspXI	VCTCGAGB	1 cut(s)	969
PsuI	RGATCY	2 cut(s)	959, 1136
PvuII	CAGCTG	1 cut(s)	1475
RsaI	GTAC	4 cut(s)	881, 1426, 1627, 1738
RsaNI	GTAC	4 cut(s)	880, 1425, 1626, 1737
RseI	CAYNNNNRTG	2 cut(s)	921, 1532
SacI	GAGCTC	1 cut(s)	1344
SalI	GTCGAC	1 cut(s)	781
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	4 cut(s)	942, 1086, 1482, 1494
SatI	GCNGC	8 cut(s)	53, 90, 110, 234, 252, 1473, 1476, 1503
Sau3AI	GATC	6 cut(s)	477, 567, 959, 1136, 1270, 1801
Sau96I	GGNCC	8 cut(s)	95, 121, 145, 183, 184, 241, 1070, 1256
ScaI	AGTACT	1 cut(s)	881
SchI	GAGTC	2 cut(s)	131, 1423
ScrFI	CCNGG	4 cut(s)	182, 459, 1128, 1685
SduI	GDGCHC	3 cut(s)	187, 1246, 1344
SfaNI	GCATC	4 cut(s)	493, 646, 755, 994
SfcI	CTRYAG	1 cut(s)	1290
SfoI	GGCGCC	1 cut(s)	232
Sfr274I	CTCGAG	1 cut(s)	969
SfuI	TTCGAA	1 cut(s)	1418
SinI	GGWCC	4 cut(s)	95, 145, 241, 1070
SlaI	CTCGAG	1 cut(s)	969
SmiMI	CAYNNNNRTG	2 cut(s)	921, 1532
SmlI	CTYRAG	1 cut(s)	969
SmoI	CTYRAG	1 cut(s)	969
SsiI	CCGC	5 cut(s)	89, 92, 143, 234, 1259
SspDI	GGCGCC	1 cut(s)	230
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	2 cut(s)	248, 855
SstI	GAGCTC	1 cut(s)	1344
StyD4I	CCNGG	4 cut(s)	180, 457, 1126, 1683
StyI	CCWWGG	2 cut(s)	237, 274
TaaI	ACNGT	5 cut(s)	402, 579, 879, 1312, 1581
TaiI	ACGT	8 cut(s)	36, 413, 637, 654, 1002, 1135, 1278, 1426
TaqII	GACCGA	1 cut(s)	64
TatI	WGTACW	2 cut(s)	879, 1736
TauI	GCSGC	2 cut(s)	92, 236
TfiI	GAWTC	2 cut(s)	872, 1202
Tru1I	TTAA	4 cut(s)	942, 1086, 1482, 1494
Tru9I	TTAA	4 cut(s)	942, 1086, 1482, 1494
TscAI	CASTG	2 cut(s)	337, 541
TseFI	GTSAC	3 cut(s)	667, 1109, 1331
TseI	GCWGC	6 cut(s)	52, 109, 251, 1472, 1475, 1502
Tsp45I	GTSAC	3 cut(s)	667, 1109, 1331
TspDTI	ATGAA	6 cut(s)	199, 709, 713, 1061, 1119, 1550
TspRI	CASTG	2 cut(s)	337, 541
Van91I	CCANNNNNTGG	1 cut(s)	1690
VpaK11BI	GGWCC	4 cut(s)	95, 145, 241, 1070
XapI	RAATTY	6 cut(s)	15, 189, 716, 1082, 1591, 1796
XceI	RCATGY	1 cut(s)	668
XhoI	CTCGAG	1 cut(s)	969
XmiI	GTMKAC	1 cut(s)	782
XspI	CTAG	2 cut(s)	248, 855
ZrmI	AGTACT	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.