Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007131

Physical Location & Seq

Genomic Coordinates Forward (+)

6867537 .. 6869644

Gene Structure 2108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG081700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTGTTACCTTATAATCATTCCATCCTCTTCTAAGAAAGTAAACGTCCTTCATGTGTTACCTTATAATCATTCCATCCTCTTCCGGTATCATATTGCAGGCACCAAGGGCATTTTCTATGCACGTGAGCCTTACTCCAATGTACATGCTGTGCATATCACCCGCTTCATAGGTCTTGCTCCAGTTGGAAACAAAGACAAGCAGAAATTTCTTCATGCGCTTTCTCCTACTCCAGCATCTACTATGTCTGCTCTTGAAATTAAGACAAAATCGCCAAATACTACCTTGTCTCCATACATGTATATCGAGGGAACAGCTAATGCAAAAGAAGGTGCAAAGAGGTCTAGTGATAGTGTTTCTGATTCTGATTCACAGTACTGGAGATATGATGTCTCCCAAAAAAGGCAGAAACATAGAGCTGGAGATGGTAATAGGCTGTGCTTTAAGTTTGTATCCTCCGGTTCTTGTCCACGAGGGGAAACTTGCAACTTTCAACATGACATGGATGCAAGAGAACAATCTTTGAGAGGTGTTTGCTTCGATTTTATGAACAAAGGAAAGTGTGAAAGGGGTACTGATTGCAAATTTAAGCACAGCTTACAGGATGAAGGTGAAAGCAATTCTCACAAGAGACGCACTGGAAATGCTACCAGGTCGACAGAGTGCTGGTTTTGTTTGTCAAGCTCCAAAATAGAGTCTCATCTATTTATCAGCTTAGGGGAGCATTACTACTGTGCACTTGCTAAAGGTCCACTTGTTGAAGACCACCTATTGCTAATCCCTATTGGGCATTCACCCAATACCCTTTCTCTACCCTCTGAATGCGAGATTGAGCTTGGTAAATTCCAGGATGGTCTTAAAAAGTTTTATAAGAAACAAGACGAGGAAGTAGTTTTCTTTGAGTGGGCTTCAAAACGTTCAACTCATGCCAATCTTCAGGTCGTTCCTATTCCATCAGCCAAAGCAGCAAGTGTTCAAAACTTATTTCACTTAGCTGCTGACAGGTTCGAATTCCAATTTACGACCACGAAATTCAGTTCTGATGGGAGAAAATCGTTGAGGACCCAGTTTGATAGAAATTTTAGCTTCTTCTATGCTGAACTCCCTGATGGTACAGTCCTATCACATTTAATTGAGGAGAGCGAGAAATTCCTACCCCAATTTGGACGTGAGGTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CwfJ_C_1 CwfJ_C_2 zf-CCCH

Protein Analysis

393

Amino Acids

44.58

Weight (kDa)

8.81

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	144 - 170	1.3e-06	DUS3L CCCH zinc finger domain
CwfJ_C_1	PF04677	212 - 329	9.2e-37	Protein similar to CwfJ C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56900 AT5G56900 AT5G56900
fragaria_vesca	FvH4_1g07540 FvH4_1g07540 FvH4_1g07540
malus_domestica	MD02G1080200.v1.1 MD15G1207600.v1.1
prunus_persica	Prupe.7G209200_v2.0.a1
pyrus_communis	pycom02g06370 pycom15g18400
rosa_chinensis	RchiOBHm_Chr2g0093421
rosa_laevigata	RLG00000016398
rosa_multiflora	Rmu_sc0004881.1_g000009 Rmu_sc0021911.1_g000011
rosa_roxburghii	Rroxscaffold_2G00148120
rosa_rugosa	Rorug02G0035700
rosa_samantha	Rh2AG081700 Rh2AG082300 Rh2BG083100 Rh2CG085100 Rh2DG080700 Rh2DG080800 Rh2DG081300
rosa_wichuraiana	Rw2G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	14, 66, 870
AccB1I	GGYRCC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	656
AciI	CCGC	1 cut(s)	163
AclI	AACGTT	1 cut(s)	916
AcsI	RAATTY	7 cut(s)	206, 584, 842, 1010, 1031, 1078, 1148
AcuI	CTGAAG	1 cut(s)	920
AcvI	CACGTG	1 cut(s)	125
AfaI	GTAC	4 cut(s)	144, 377, 574, 1114
AfiI	CCNNNNNNNGG	2 cut(s)	402, 1163
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	6 cut(s)	257, 494, 761, 912, 921, 977
AjiI	CACGTC	1 cut(s)	1169
AjnI	CCWGG	2 cut(s)	650, 846
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	8 cut(s)	317, 419, 597, 684, 714, 835, 995, 1086
AluI	AGCT	8 cut(s)	317, 419, 597, 684, 714, 835, 995, 1086
Alw21I	GWGCWC	1 cut(s)	739
Alw26I	GTCTC	4 cut(s)	294, 397, 625, 702
Alw44I	GTGCAC	1 cut(s)	735
ApaLI	GTGCAC	1 cut(s)	735
ApeKI	GCWGC	2 cut(s)	965, 995
ApoI	RAATTY	7 cut(s)	206, 584, 842, 1010, 1031, 1078, 1148
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	749, 1062
AsuHPI	GGTGA	3 cut(s)	151, 623, 786
AsuII	TTCGAA	1 cut(s)	1008
AvaII	GGWCC	2 cut(s)	749, 1062
BaeGI	GKGCMC	1 cut(s)	739
BanI	GGYRCC	1 cut(s)	101
BarI	GAAGNNNNNNTAC	2 cut(s)	33, 65
BauI	CACGAG	1 cut(s)	471
BbrPI	CACGTG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	768
Bbv12I	GWGCWC	1 cut(s)	739
BbvI	GCAGC	2 cut(s)	977, 982
BccI	CCATC	7 cut(s)	31, 83, 419, 845, 961, 1037, 1103
BciT130I	CCWGG	2 cut(s)	652, 848
BciVI	GTATCC	1 cut(s)	463
BcoDI	GTCTC	4 cut(s)	294, 397, 625, 702
BfaI	CTAG	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	463
BisI	GCNGC	2 cut(s)	966, 996
BlsI	GCNGC	2 cut(s)	967, 997
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	2 cut(s)	652, 848
Bme18I	GGWCC	2 cut(s)	749, 1062
BmgBI	CACGTC	1 cut(s)	1169
BmgT120I	GGNCC	2 cut(s)	749, 1062
BmiI	GGNNCC	2 cut(s)	103, 1064
BmrFI	CCNGG	2 cut(s)	652, 848
BmrI	ACTGGG	1 cut(s)	1060
BmsI	GCATC	2 cut(s)	245, 496
BmuI	ACTGGG	1 cut(s)	1060
BpiI	GAAGAC	1 cut(s)	768
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	4 cut(s)	165, 216, 400, 441
Bpu10I	CCTNAGC	1 cut(s)	715
Bpu14I	TTCGAA	1 cut(s)	1008
BsaAI	YACGTR	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	2 cut(s)	84, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 1163
Bse1I	ACTGG	4 cut(s)	182, 383, 643, 1066
BseBI	CCWGG	2 cut(s)	652, 848
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	5 cut(s)	23, 75, 511, 610, 856
BseLI	CCNNNNNNNGG	2 cut(s)	402, 1163
BseNI	ACTGG	4 cut(s)	182, 383, 643, 1066
BseRI	GAGGAG	1 cut(s)	1151
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	2 cut(s)	977, 982
BshNI	GGYRCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	739
BsiSI	CCGG	2 cut(s)	85, 459
BslI	CCNNNNNNNGG	2 cut(s)	402, 1163
BsmAI	GTCTC	4 cut(s)	294, 397, 625, 702
BsmBI	CGTCTC	1 cut(s)	625
BsmI	GAATGC	2 cut(s)	790, 827
Bsp119I	TTCGAA	1 cut(s)	1008
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp1407I	TGTACA	1 cut(s)	142
BspACI	CCGC	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	103, 1064
BspT104I	TTCGAA	1 cut(s)	1008
BspT107I	GGYRCC	1 cut(s)	101
BsrGI	TGTACA	1 cut(s)	142
BsrI	ACTGG	4 cut(s)	182, 383, 643, 1066
BssECI	CCNNGG	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	471
BssT1I	CCWWGG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	652, 848
Bst4CI	ACNGT	3 cut(s)	375, 734, 1117
Bst6I	CTCTTC	2 cut(s)	34, 86
BstAUI	TGTACA	1 cut(s)	142
BstBAI	YACGTR	1 cut(s)	125
BstBI	TTCGAA	1 cut(s)	1008
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	33, 715, 991
BstF5I	GGATG	5 cut(s)	23, 75, 511, 610, 856
BstHHI	GCGC	1 cut(s)	220
BstMAI	GTCTC	4 cut(s)	294, 397, 625, 702
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 965
BstNI	CCWGG	2 cut(s)	652, 848
BstNSI	RCATGY	2 cut(s)	149, 301
BstSCI	CCNGG	2 cut(s)	650, 846
BstSLI	GKGCMC	1 cut(s)	739
BstV1I	GCAGC	2 cut(s)	977, 982
BstV2I	GAAGAC	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	463
BtrI	CACGTC	1 cut(s)	1169
BtsCI	GGATG	5 cut(s)	23, 75, 511, 610, 856
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	749, 1062
CseI	GACGC	1 cut(s)	642
CsiI	ACCWGGT	1 cut(s)	650
Csp6I	GTAC	4 cut(s)	143, 376, 573, 1113
CviAII	CATG	7 cut(s)	53, 146, 215, 298, 497, 502, 926
CviQI	GTAC	4 cut(s)	143, 376, 573, 1113
DdeI	CTNAG	3 cut(s)	33, 715, 991
Eam1104I	CTCTTC	2 cut(s)	34, 86
EarI	CTCTTC	2 cut(s)	34, 86
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	2 cut(s)	749, 1062
Eco57I	CTGAAG	1 cut(s)	920
Eco72I	CACGTG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	1062
EcoRI	GAATTC	1 cut(s)	1010
EcoRII	CCWGG	2 cut(s)	650, 846
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	7 cut(s)	56, 149, 218, 301, 500, 505, 929
FalI	AAGNNNNNCTT	4 cut(s)	581, 613, 738, 770
FatI	CATG	7 cut(s)	52, 145, 214, 297, 496, 501, 925
FauI	CCCGC	1 cut(s)	170
FblI	GTMKAC	1 cut(s)	656
Fnu4HI	GCNGC	2 cut(s)	966, 996
FokI	GGATG	5 cut(s)	10, 62, 518, 617, 863
Fsp4HI	GCNGC	2 cut(s)	966, 996
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	2 cut(s)	966, 996
GsuI	CTGGAG	4 cut(s)	165, 216, 400, 441
HapII	CCGG	2 cut(s)	85, 459
HgaI	GACGC	1 cut(s)	642
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	7 cut(s)	56, 149, 218, 301, 500, 505, 929
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HinfI	GANTC	3 cut(s)	362, 368, 695
HpaII	CCGG	2 cut(s)	85, 459
HphI	GGTGA	3 cut(s)	151, 623, 786
Hpy166II	GTNNAC	5 cut(s)	43, 470, 657, 737, 752
Hpy188I	TCNGA	4 cut(s)	361, 367, 820, 1042
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	5 cut(s)	43, 470, 657, 737, 752
HpyAV	CCTTC	3 cut(s)	59, 323, 602
HpyCH4III	ACNGT	3 cut(s)	375, 734, 1117
HpyCH4IV	ACGT	4 cut(s)	45, 124, 916, 1168
HpyCH4V	TGCA	9 cut(s)	98, 122, 154, 323, 335, 486, 509, 582, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 965
HpyF3I	CTNAG	3 cut(s)	33, 715, 991
HpySE526I	ACGT	4 cut(s)	45, 124, 916, 1168
Hsp92II	CATG	7 cut(s)	56, 149, 218, 301, 500, 505, 929
HspAI	GCGC	1 cut(s)	218
LmnI	GCTCC	3 cut(s)	184, 689, 721
Lsp1109I	GCAGC	2 cut(s)	977, 982
LweI	GCATC	2 cut(s)	245, 496
MabI	ACCWGGT	1 cut(s)	650
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	4 cut(s)	45, 124, 916, 1168
MaeIII	GTNAC	2 cut(s)	5, 57
MboII	GAAGA	6 cut(s)	21, 73, 203, 773, 926, 1081
MhlI	GDGCHC	1 cut(s)	739
MlyI	GAGTC	1 cut(s)	704
MmeI	TCCRAC	1 cut(s)	166
MseI	TTAA	5 cut(s)	261, 444, 588, 858, 1130
MspI	CCGG	2 cut(s)	85, 459
MspR9I	CCNGG	2 cut(s)	652, 848
Mva1269I	GAATGC	2 cut(s)	790, 827
MvaI	CCWGG	2 cut(s)	652, 848
MwoI	GCNNNNNNNGC	2 cut(s)	108, 965
NlaIII	CATG	7 cut(s)	56, 149, 218, 301, 500, 505, 929
NlaIV	GGNNCC	2 cut(s)	103, 1064
NspI	RCATGY	2 cut(s)	149, 301
NspV	TTCGAA	1 cut(s)	1008
PciI	ACATGT	1 cut(s)	297
PctI	GAATGC	2 cut(s)	790, 827
PfeI	GAWTC	2 cut(s)	362, 368
PfoI	TCCNGGA	1 cut(s)	846
PkrI	GCNGC	2 cut(s)	967, 997
PleI	GAGTC	1 cut(s)	703
PmaCI	CACGTG	1 cut(s)	125
PmlI	CACGTG	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	703
Ppu21I	YACGTR	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	1062
PscI	ACATGT	1 cut(s)	297
PsiI	TTATAA	3 cut(s)	14, 66, 870
Psp1406I	AACGTT	1 cut(s)	916
Psp5II	RGGWCCY	1 cut(s)	1062
Psp6I	CCWGG	2 cut(s)	650, 846
PspCI	CACGTG	1 cut(s)	125
PspGI	CCWGG	2 cut(s)	650, 846
PspN4I	GGNNCC	2 cut(s)	103, 1064
PspPI	GGNCC	2 cut(s)	749, 1062
PspPPI	RGGWCCY	1 cut(s)	1062
RsaI	GTAC	4 cut(s)	144, 377, 574, 1114
RsaNI	GTAC	4 cut(s)	143, 376, 573, 1113
SalI	GTCGAC	1 cut(s)	655
SaqAI	TTAA	5 cut(s)	261, 444, 588, 858, 1130
SatI	GCNGC	2 cut(s)	966, 996
Sau96I	GGNCC	2 cut(s)	749, 1062
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	1 cut(s)	704
ScrFI	CCNGG	2 cut(s)	652, 848
SduI	GDGCHC	1 cut(s)	739
SexAI	ACCWGGT	1 cut(s)	650
SfaNI	GCATC	2 cut(s)	245, 496
SfuI	TTCGAA	1 cut(s)	1008
SinI	GGWCC	2 cut(s)	749, 1062
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	650, 846
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	375, 734, 1117
TaiI	ACGT	4 cut(s)	48, 127, 919, 1171
TaqI	TCGA	4 cut(s)	306, 540, 656, 1008
TatI	WGTACW	2 cut(s)	142, 375
TfiI	GAWTC	2 cut(s)	362, 368
Tru1I	TTAA	5 cut(s)	261, 444, 588, 858, 1130
Tru9I	TTAA	5 cut(s)	261, 444, 588, 858, 1130
TscAI	CASTG	1 cut(s)	643
TseI	GCWGC	2 cut(s)	965, 995
TspDTI	ATGAA	5 cut(s)	41, 157, 203, 563, 621
TspRI	CASTG	1 cut(s)	643
VneI	GTGCAC	1 cut(s)	735
VpaK11BI	GGWCC	2 cut(s)	749, 1062
XapI	RAATTY	7 cut(s)	206, 584, 842, 1010, 1031, 1078, 1148
XceI	RCATGY	2 cut(s)	149, 301
XmiI	GTMKAC	1 cut(s)	656
XspI	CTAG	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.