Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007131

Physical Location & Seq

Genomic Coordinates Forward (+)

6259808 .. 6263007

Gene Structure 3200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G006490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

ATGGCTCCTCCCAAAATCTTACTCTGCGGCGACGTCTCCGGCAACCTCAAGCAGCTCTTCAAACGAGTCGTCTCGGTCAACAAATCGGCCGGTCCCTTCGACGCGTTGTTCTGCGTCGGCCAGTTCTTTCCCGACTCGGCAGACCAGCTTGAAGAGTTCACCGGTTACATGGAAGGCCGGGCCGAGATTCCTCTCCCGACCTACTTCATCGGCGACTATGGCGTCGGCGCCACTAAGTTTCTATTGGCGGCAACCAAGGACTCGGGGAACCAAGGCTTCAAAATGGACGGCTTGAAGGTTTGCAACAATCTCTACTGGCTGAAAGGCAGTGGCAAATTCACCTTCCACGGGTTATCGGTGGTGTATTTGTCTGGTCTGCAATCTTCTGATAGTCAACAGTTTGGGACTTACAGTCAGGATGATGTTGATGCATTGCGAGCAATTGCTGAAGATCCTGGGATCGTTGACTTTGGGATTACAAATAAAGCAGGTACATCTGATGTTCCTCCTAGAGCCTCTGAGCCTTTTGGCACTGACTCTACTGTGGCAGAGTTAGCAGCCGAGATCAAACCACGCTATCATGTTGCAGGCACAAAAGGCATGTTCTATGCACGTGAGCCTTACTCCAATGTCGATGCTGTGCATGTCACCCGCTTCATAGGTCTTGCTCCAGTTGGAAACAAAGACAAGCAGAAATTTCTTCATGCGCTTTCTCCTACTCCAGCATCTACTATGTCTGCTCTTGAAATTAAGACAAAATCGCCAAACACTACCTTGTCTCCATACATGTATATCGAGGGAACAGCTAATGCGAAAGAAGGTGCAAAGAGGTCTAGTGATAGTGTTTCTGATTCTGATTCACAGTACTGGAGATATGATGTCTCCCAAAAAAGGCAGAAACATGGAGCTGGAGATGGTAATAGGCTGTGCTTTAAGTTTGTATCCTCTGGTTCTTGTCCACGAGGGGAAACTTGCAACTTTCAACATGACATGGATGCAAGAGAACAATCTTTGAGAGGTGTTTGCTTCGATTTTATGAACAAAGGAAAGTGTGAAAGGGGTACTGATTGCAAATTTAAGCACAGCTTACAGGATGAAGGTGAAAGCAATTCTCACAAAAGACGCACTGGAAATGCTACCAGGTCGACAGAGTGCTGGTTTTGTTTGTCAAGCTCCAAAATAGAGTCTCATCTATTTATCAGCTTAGGGGAGCATTACTACTGTGCACTTGCTAAAGGCCCACTTGTTGAAGACCACGTATTGCTAATCCCTATTGGGCATTCACCCAATACCCTTTCTCTACCCTCCGAATGTGAGATGGAGCTTGGTAAATTCCAGGATAGTCTTAAAAAGTTTTATAAGAAACAAGACAAGGAAGTAGTTTTCTTTGAGTGGGCTTCAAAACGTTCAACTCATGCCAATCTTCAGGTCGTTCCTATTCCGTCAGCCAAAGCAGCTAGTGTTCAAAATTTATTTCATTTAGCTGCTGACAGGTTCAAATTCAAATTTATGACCACAAAATTCAGTAACAGTTCTGATGGGAGAAAATCGTTGAGGACCCAGTTCGATAGAAATTTTAGCTTCTTCTATGCTGAGCTCCCTGATGGTACAGTCCTATCACATTTAATTGAGGAGAGCGAGAATTTCCTACCCCAATTTGGACGTGAGGTTATGGCAGGTTTATTGAACAAGGCTAACAGGGCTGATTGGAGGAGGTGTACAGATAGCAAAGAAGAGGAAACGAAGATGGTAGAAAAATTCAAGAGTATATTCGAAGAATTTGATCCAAATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CwfJ_C_1 CwfJ_C_2 zf-CCCH

Protein Analysis

598

Amino Acids

66.61

Weight (kDa)

7.2

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	307 - 333	2.1e-06	DUS3L CCCH zinc finger domain
CwfJ_C_1	PF04677	375 - 492	2.6e-37	Protein similar to CwfJ C-terminal
CwfJ_C_2	PF04676	512 - 595	2e-19	Protein similar to CwfJ C-terminus 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56900 AT5G56900 AT5G56900
fragaria_vesca	FvH4_1g07540 FvH4_1g07540 FvH4_1g07540
malus_domestica	MD02G1080200.v1.1 MD15G1207600.v1.1
prunus_persica	Prupe.7G209200_v2.0.a1
pyrus_communis	pycom02g06370 pycom15g18400
rosa_chinensis	RchiOBHm_Chr2g0093421
rosa_laevigata	RLG00000016398
rosa_multiflora	Rmu_sc0004881.1_g000009 Rmu_sc0021911.1_g000011
rosa_roxburghii	Rroxscaffold_2G00148120
rosa_rugosa	Rorug02G0035700
rosa_samantha	Rh2AG081700 Rh2AG082300 Rh2BG083100 Rh2CG085100 Rh2DG080700 Rh2DG080800 Rh2DG081300
rosa_wichuraiana	Rw2G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1359
AasI	GACNNNNNNGTC	1 cut(s)	221
AatII	GACGTC	1 cut(s)	36
Acc36I	ACCTGC	2 cut(s)	479, 1667
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	1145
AccII	CGCG	1 cut(s)	104
AciI	CCGC	3 cut(s)	27, 248, 652
AclI	AACGTT	1 cut(s)	1405
AclWI	GGATC	3 cut(s)	446, 467, 1778
AcoI	YGGCCR	2 cut(s)	87, 118
AcuI	CTGAAG	2 cut(s)	468, 1409
AcvI	CACGTG	1 cut(s)	614
AcyI	GRCGYC	3 cut(s)	33, 222, 228
AfaI	GTAC	5 cut(s)	493, 866, 1063, 1609, 1720
AfiI	CCNNNNNNNGG	3 cut(s)	348, 891, 1658
AflIII	ACRYGT	2 cut(s)	102, 786
AgeI	ACCGGT	1 cut(s)	161
AhdI	GACNNNNNGTC	1 cut(s)	411
AjiI	CACGTC	1 cut(s)	1664
AjnI	CCWGG	3 cut(s)	454, 1139, 1335
Alw21I	GWGCWC	2 cut(s)	1228, 1599
Alw26I	GTCTC	5 cut(s)	40, 76, 783, 886, 1191
Alw44I	GTGCAC	1 cut(s)	1224
AlwI	GGATC	3 cut(s)	446, 467, 1778
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	5 cut(s)	87, 118, 175, 180, 1237
ApaLI	GTGCAC	1 cut(s)	1224
ApeKI	GCWGC	4 cut(s)	52, 557, 1454, 1484
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AsiGI	ACCGGT	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	230, 709
AspS9I	GGNCC	4 cut(s)	92, 180, 1238, 1557
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	5 cut(s)	151, 331, 640, 1112, 1275
AsuII	TTCGAA	1 cut(s)	1773
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	92, 1557
BaeGI	GKGCMC	1 cut(s)	1228
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	1599
BauI	CACGAG	1 cut(s)	960
BbrPI	CACGTG	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	1257
Bbv12I	GWGCWC	2 cut(s)	1228, 1599
BbvI	GCAGC	4 cut(s)	64, 569, 1466, 1471
BccI	CCATC	5 cut(s)	908, 1312, 1532, 1598, 1741
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	3 cut(s)	456, 1141, 1337
BciVI	GTATCC	1 cut(s)	952
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	5 cut(s)	40, 76, 783, 886, 1191
BfaI	CTAG	3 cut(s)	510, 834, 1458
BfoI	RGCGCY	1 cut(s)	231
BfuAI	ACCTGC	2 cut(s)	479, 1667
BfuI	GTATCC	1 cut(s)	952
BisI	GCNGC	6 cut(s)	28, 53, 249, 558, 1455, 1485
BlpI	GCTNAGC	1 cut(s)	1593
BlsI	GCNGC	6 cut(s)	29, 54, 250, 559, 1456, 1486
BmcAI	AGTACT	1 cut(s)	866
Bme1390I	CCNGG	4 cut(s)	179, 456, 1141, 1337
Bme18I	GGWCC	2 cut(s)	92, 1557
BmeRI	GACNNNNNGTC	1 cut(s)	411
BmeT110I	CYCGRG	1 cut(s)	262
BmgBI	CACGTC	1 cut(s)	1664
BmgT120I	GGNCC	4 cut(s)	92, 180, 1238, 1557
BmiI	GGNNCC	5 cut(s)	6, 94, 229, 269, 1559
BmrFI	CCNGG	4 cut(s)	179, 456, 1141, 1337
BmrI	ACTGGG	1 cut(s)	1555
BmsI	GCATC	4 cut(s)	418, 625, 734, 985
BmuI	ACTGGG	1 cut(s)	1555
BpiI	GAAGAC	1 cut(s)	1257
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	4 cut(s)	654, 705, 889, 930
Bpu10I	CCTNAGC	1 cut(s)	1204
Bpu1102I	GCTNAGC	1 cut(s)	1593
Bpu14I	TTCGAA	1 cut(s)	1773
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	179
BsaAI	YACGTR	2 cut(s)	614, 1258
BsaHI	GRCGYC	3 cut(s)	33, 222, 228
BsaJI	CCNNGG	4 cut(s)	255, 271, 346, 455
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	4 cut(s)	763, 793, 1702, 1732
Bsc4I	CCNNNNNNNGG	3 cut(s)	348, 891, 1658
Bse118I	RCCGGY	2 cut(s)	89, 161
Bse1I	ACTGG	6 cut(s)	121, 320, 671, 872, 1132, 1561
Bse3DI	GCAATG	1 cut(s)	431
BseBI	CCWGG	3 cut(s)	456, 1141, 1337
BseDI	CCNNGG	4 cut(s)	255, 271, 346, 455
BseGI	GGATG	3 cut(s)	424, 1000, 1099
BseLI	CCNNNNNNNGG	3 cut(s)	348, 891, 1658
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	2 cut(s)	510, 1584
BseNI	ACTGG	6 cut(s)	121, 320, 671, 872, 1132, 1561
BseRI	GAGGAG	2 cut(s)	1646, 1726
BseSI	GKGCMC	1 cut(s)	1228
BseX3I	CGGCCG	1 cut(s)	87
BseXI	GCAGC	4 cut(s)	64, 569, 1466, 1471
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	5 cut(s)	89, 120, 177, 182, 1239
BshNI	GGYRCC	1 cut(s)	227
BshTI	ACCGGT	1 cut(s)	161
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	1228, 1599
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	4 cut(s)	39, 90, 162, 178
BslFI	GGGAC	2 cut(s)	78, 418
BslI	CCNNNNNNNGG	3 cut(s)	348, 891, 1658
BsmAI	GTCTC	5 cut(s)	40, 76, 783, 886, 1191
BsmBI	CGTCTC	2 cut(s)	40, 76
BsmFI	GGGAC	2 cut(s)	78, 418
BsmI	GAATGC	1 cut(s)	1279
BsnI	GGCC	5 cut(s)	89, 120, 177, 182, 1239
BsoBI	CYCGRG	1 cut(s)	262
Bsp119I	TTCGAA	1 cut(s)	1773
Bsp1286I	GDGCHC	2 cut(s)	1228, 1599
Bsp1407I	TGTACA	1 cut(s)	1718
Bsp143I	GATC	4 cut(s)	451, 459, 564, 1783
Bsp1720I	GCTNAGC	1 cut(s)	1593
BspACI	CCGC	3 cut(s)	27, 248, 652
BspANI	GGCC	5 cut(s)	89, 120, 177, 182, 1239
BspCNI	CTCAG	2 cut(s)	511, 1585
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	5 cut(s)	6, 94, 229, 269, 1559
BspMI	ACCTGC	2 cut(s)	479, 1667
BspPI	GGATC	3 cut(s)	446, 467, 1778
BspQI	GCTCTTC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	1773
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	431
BsrFI	RCCGGY	2 cut(s)	89, 161
BsrGI	TGTACA	1 cut(s)	1718
BsrI	ACTGG	6 cut(s)	121, 320, 671, 872, 1132, 1561
BssAI	RCCGGY	2 cut(s)	89, 161
BssECI	CCNNGG	4 cut(s)	255, 271, 346, 455
BssMI	GATC	4 cut(s)	451, 459, 564, 1783
BssNI	GRCGYC	3 cut(s)	33, 222, 228
BssSI	CACGAG	1 cut(s)	960
BssT1I	CCWWGG	2 cut(s)	255, 271
Bst2BI	CACGAG	1 cut(s)	960
Bst2UI	CCWGG	3 cut(s)	456, 1141, 1337
Bst4CI	ACNGT	7 cut(s)	399, 413, 544, 864, 1223, 1532, 1612
Bst6I	CTCTTC	3 cut(s)	62, 147, 1728
BstACI	GRCGYC	3 cut(s)	33, 222, 228
BstAUI	TGTACA	1 cut(s)	1718
BstBAI	YACGTR	2 cut(s)	614, 1258
BstBI	TTCGAA	1 cut(s)	1773
BstC8I	GCNNGC	2 cut(s)	438, 589
BstDEI	CTNAG	4 cut(s)	234, 519, 1204, 1593
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	3 cut(s)	424, 1000, 1099
BstFNI	CGCG	1 cut(s)	104
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	230, 709
BstKTI	GATC	4 cut(s)	454, 462, 567, 1786
BstMAI	GTCTC	5 cut(s)	40, 76, 783, 886, 1191
BstMBI	GATC	4 cut(s)	451, 459, 564, 1783
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	6 cut(s)	219, 437, 554, 597, 1454, 1700
BstNI	CCWGG	3 cut(s)	456, 1141, 1337
BstNSI	RCATGY	3 cut(s)	604, 647, 790
BstSCI	CCNGG	4 cut(s)	177, 454, 1139, 1335
BstSLI	GKGCMC	1 cut(s)	1228
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	4 cut(s)	64, 569, 1466, 1471
BstV2I	GAAGAC	1 cut(s)	1257
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BstZI	CGGCCG	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	952
BsuRI	GGCC	5 cut(s)	89, 120, 177, 182, 1239
BtgI	CCRYGG	1 cut(s)	346
BtrI	CACGTC	1 cut(s)	1664
BtsCI	GGATG	3 cut(s)	424, 1000, 1099
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	3 cut(s)	334, 531, 1125
BveI	ACCTGC	2 cut(s)	479, 1667
Cac8I	GCNNGC	2 cut(s)	438, 589
CfoI	GCGC	2 cut(s)	230, 709
Cfr10I	RCCGGY	2 cut(s)	89, 161
Cfr13I	GGNCC	4 cut(s)	92, 180, 1238, 1557
CseI	GACGC	4 cut(s)	103, 110, 211, 1131
CsiI	ACCWGGT	1 cut(s)	1139
Csp6I	GTAC	5 cut(s)	492, 865, 1062, 1608, 1719
CspAI	ACCGGT	1 cut(s)	161
CviQI	GTAC	5 cut(s)	492, 865, 1062, 1608, 1719
DdeI	CTNAG	4 cut(s)	234, 519, 1204, 1593
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	4 cut(s)	453, 461, 566, 1785
DpnII	GATC	4 cut(s)	451, 459, 564, 1783
DrdI	GACNNNNNNGTC	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	411
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	87, 118
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	3 cut(s)	62, 147, 1728
Eam1105I	GACNNNNNGTC	1 cut(s)	411
EarI	CTCTTC	3 cut(s)	62, 147, 1728
Ecl136II	GAGCTC	1 cut(s)	1597
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	255, 271
Eco24I	GRGCYC	1 cut(s)	1599
Eco47I	GGWCC	2 cut(s)	92, 1557
Eco52I	CGGCCG	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	1597
Eco57I	CTGAAG	2 cut(s)	468, 1409
Eco72I	CACGTG	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	262
EcoICRI	GAGCTC	1 cut(s)	1597
EcoO109I	RGGNCCY	1 cut(s)	1557
EcoRII	CCWGG	3 cut(s)	454, 1139, 1335
EcoT14I	CCWWGG	2 cut(s)	255, 271
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	1599
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	2 cut(s)	255, 271
Esp3I	CGTCTC	2 cut(s)	40, 76
FalI	AAGNNNNNCTT	6 cut(s)	41, 73, 1070, 1102, 1227, 1259
FaqI	GGGAC	2 cut(s)	78, 418
FauI	CCCGC	1 cut(s)	659
FblI	GTMKAC	1 cut(s)	1145
Fnu4HI	GCNGC	6 cut(s)	28, 53, 249, 558, 1455, 1485
FokI	GGATG	3 cut(s)	431, 1007, 1106
FriOI	GRGCYC	1 cut(s)	1599
Fsp4HI	GCNGC	6 cut(s)	28, 53, 249, 558, 1455, 1485
FspBI	CTAG	3 cut(s)	510, 834, 1458
GlaI	GCGC	2 cut(s)	229, 708
GluI	GCNGC	6 cut(s)	28, 53, 249, 558, 1455, 1485
GsuI	CTGGAG	4 cut(s)	654, 705, 889, 930
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	5 cut(s)	89, 120, 177, 182, 1239
HapII	CCGG	4 cut(s)	39, 90, 162, 178
HgaI	GACGC	4 cut(s)	103, 110, 211, 1131
HhaI	GCGC	2 cut(s)	230, 709
Hin1I	GRCGYC	3 cut(s)	33, 222, 228
Hin6I	GCGC	2 cut(s)	228, 707
HinP1I	GCGC	2 cut(s)	228, 707
HincII	GTYRAC	4 cut(s)	79, 395, 466, 1146
HindII	GTYRAC	4 cut(s)	79, 395, 466, 1146
HinfI	GANTC	8 cut(s)	66, 134, 187, 260, 536, 851, 857, 1184
HpaII	CCGG	4 cut(s)	39, 90, 162, 178
HphI	GGTGA	5 cut(s)	151, 331, 640, 1112, 1275
Hpy166II	GTNNAC	8 cut(s)	79, 159, 395, 466, 959, 1146, 1226, 1719
Hpy188I	TCNGA	7 cut(s)	388, 499, 520, 850, 856, 1309, 1537
Hpy188III	TCNNGA	5 cut(s)	131, 196, 416, 743, 1762
Hpy8I	GTNNAC	8 cut(s)	79, 159, 395, 466, 959, 1146, 1226, 1719
Hpy99I	CGWCG	4 cut(s)	35, 104, 119, 227
HpyAV	CCTTC	6 cut(s)	106, 167, 289, 352, 812, 1091
HpyCH4III	ACNGT	7 cut(s)	399, 413, 544, 864, 1223, 1532, 1612
HpyCH4IV	ACGT	5 cut(s)	33, 613, 1257, 1405, 1663
HpyF10VI	GCNNNNNNNGC	6 cut(s)	219, 437, 554, 597, 1454, 1700
HpyF3I	CTNAG	4 cut(s)	234, 519, 1204, 1593
HpySE526I	ACGT	5 cut(s)	33, 613, 1257, 1405, 1663
Hsp92I	GRCGYC	3 cut(s)	33, 222, 228
HspAI	GCGC	2 cut(s)	228, 707
KasI	GGCGCC	1 cut(s)	227
Kzo9I	GATC	4 cut(s)	451, 459, 564, 1783
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	7 cut(s)	10, 673, 905, 1178, 1210, 1321, 1602
Lsp1109I	GCAGC	4 cut(s)	64, 569, 1466, 1471
LweI	GCATC	4 cut(s)	418, 625, 734, 985
MabI	ACCWGGT	1 cut(s)	1139
MaeI	CTAG	3 cut(s)	510, 834, 1458
MaeII	ACGT	5 cut(s)	33, 613, 1257, 1405, 1663
MaeIII	GTNAC	3 cut(s)	164, 646, 1526
MalI	GATC	4 cut(s)	453, 461, 566, 1785
MboI	GATC	4 cut(s)	451, 459, 564, 1783
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	1228, 1599
MluI	ACGCGT	1 cut(s)	102
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	5 cut(s)	75, 128, 254, 530, 1193
MmeI	TCCRAC	1 cut(s)	655
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	5 cut(s)	750, 933, 1077, 1347, 1625
MspI	CCGG	4 cut(s)	39, 90, 162, 178
MspR9I	CCNGG	4 cut(s)	179, 456, 1141, 1337
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	1279
MvaI	CCWGG	3 cut(s)	456, 1141, 1337
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	6 cut(s)	219, 437, 554, 597, 1454, 1700
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	4 cut(s)	451, 459, 564, 1783
NlaIV	GGNNCC	5 cut(s)	6, 94, 229, 269, 1559
NmeAIII	GCCGAG	3 cut(s)	116, 208, 586
NmuCI	GTSAC	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	3 cut(s)	604, 647, 790
NspV	TTCGAA	1 cut(s)	1773
PciI	ACATGT	1 cut(s)	786
PciSI	GCTCTTC	1 cut(s)	62
PctI	GAATGC	1 cut(s)	1279
PfeI	GAWTC	3 cut(s)	187, 851, 857
PfoI	TCCNGGA	1 cut(s)	1335
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	6 cut(s)	29, 54, 250, 559, 1456, 1486
PleI	GAGTC	5 cut(s)	74, 128, 254, 530, 1192
PluTI	GGCGCC	1 cut(s)	231
PmaCI	CACGTG	1 cut(s)	614
PmlI	CACGTG	1 cut(s)	614
PpsI	GAGTC	5 cut(s)	74, 128, 254, 530, 1192
Ppu21I	YACGTR	2 cut(s)	614, 1258
PpuMI	RGGWCCY	1 cut(s)	1557
PscI	ACATGT	1 cut(s)	786
PsiI	TTATAA	1 cut(s)	1359
Psp124BI	GAGCTC	1 cut(s)	1599
Psp1406I	AACGTT	1 cut(s)	1405
Psp5II	RGGWCCY	1 cut(s)	1557
Psp6I	CCWGG	3 cut(s)	454, 1139, 1335
PspCI	CACGTG	1 cut(s)	614
PspGI	CCWGG	3 cut(s)	454, 1139, 1335
PspN4I	GGNNCC	5 cut(s)	6, 94, 229, 269, 1559
PspPI	GGNCC	4 cut(s)	92, 180, 1238, 1557
PspPPI	RGGWCCY	1 cut(s)	1557
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	5 cut(s)	493, 866, 1063, 1609, 1720
RsaNI	GTAC	5 cut(s)	492, 865, 1062, 1608, 1719
SacI	GAGCTC	1 cut(s)	1599
SalI	GTCGAC	1 cut(s)	1144
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	5 cut(s)	750, 933, 1077, 1347, 1625
SatI	GCNGC	6 cut(s)	28, 53, 249, 558, 1455, 1485
Sau3AI	GATC	4 cut(s)	451, 459, 564, 1783
Sau96I	GGNCC	4 cut(s)	92, 180, 1238, 1557
ScaI	AGTACT	1 cut(s)	866
SchI	GAGTC	5 cut(s)	75, 128, 254, 530, 1193
ScrFI	CCNGG	4 cut(s)	179, 456, 1141, 1337
SduI	GDGCHC	2 cut(s)	1228, 1599
SexAI	ACCWGGT	1 cut(s)	1139
SfaNI	GCATC	4 cut(s)	418, 625, 734, 985
SfoI	GGCGCC	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	1773
SinI	GGWCC	2 cut(s)	92, 1557
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	3 cut(s)	27, 248, 652
SspDI	GGCGCC	1 cut(s)	227
SspMI	CTAG	3 cut(s)	510, 834, 1458
SstI	GAGCTC	1 cut(s)	1599
StyD4I	CCNGG	4 cut(s)	177, 454, 1139, 1335
StyI	CCWWGG	2 cut(s)	255, 271
TaaI	ACNGT	7 cut(s)	399, 413, 544, 864, 1223, 1532, 1612
TaiI	ACGT	5 cut(s)	36, 616, 1260, 1408, 1666
TaqI	TCGA	7 cut(s)	99, 633, 795, 1029, 1145, 1566, 1773
TaqII	GACCGA	1 cut(s)	64
TatI	WGTACW	2 cut(s)	864, 1718
TauI	GCSGC	2 cut(s)	30, 251
TfiI	GAWTC	3 cut(s)	187, 851, 857
Tru1I	TTAA	5 cut(s)	750, 933, 1077, 1347, 1625
Tru9I	TTAA	5 cut(s)	750, 933, 1077, 1347, 1625
TscAI	CASTG	3 cut(s)	334, 538, 1132
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	4 cut(s)	52, 557, 1454, 1484
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	6 cut(s)	196, 646, 692, 1052, 1110, 1466
TspGWI	ACGGA	1 cut(s)	1431
TspRI	CASTG	3 cut(s)	334, 538, 1132
VneI	GTGCAC	1 cut(s)	1224
VpaK11BI	GGWCC	2 cut(s)	92, 1557
XceI	RCATGY	3 cut(s)	604, 647, 790
XmiI	GTMKAC	1 cut(s)	1145
XspI	CTAG	3 cut(s)	510, 834, 1458
ZraI	GACGTC	1 cut(s)	34
ZrmI	AGTACT	1 cut(s)	866
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.