Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004881.1

Orthogroup ID

OG0007131

Physical Location & Seq

Genomic Coordinates Forward (+)

22951 .. 26175

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004881.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

atgtcgatctacctacagtttgccatccatgaggatgagagggttcataatcggtggtatgtgatcgagaagagaagtggtgaagaagaagaagaagcagatggagggtatcatattgcaggcaccaaaggcattttctatgcacgtgagccttactccaatgtacatgctgtgcatatcacccgcttcataggtcttgctccagttggaaacaaagacaagcagaaatttcttcatgcgctttctcctactccagcatctactatgtctgctcttgaaattaagacaaaatcgccaaatactaccttgtctccatacatgtatatcgagggaacagctaatgcaaaagaaggtgcaaagaggtctagtgatagtgtttctgattctgattcacagtactggagatatgatgtctcccaaaaaaggcagaaacatagagctggagatggtaataggctgtgctttaagtttgtatcctccggttattcttgtccacgaggggaaacttgcaactttcaacatgacatggatgcaagagaacaatctttgagaggtgtttgcttcgattttatgaacaaaggaaagtgtgaaaggggtactgattgcaaatttaagcacagcttacaggatgaaggtgaaagcaattctcgcaagagacgcacgggaaatgctaccaggtcgacagagtgctggttttgtttgtcaagctccaaaatagagtctcatctatttatcagcttaggggagcattactactgtgcacttgctaaaggtccacttgttgaagaccacctattgctaatccctattgggcattcacccaataccctttctctacccactgaatgcgagattgagcttggtaaattccaggatggtcttaaaaagttttataagaaacaagacaaggaagtagttttctttgagtgggcttcaaaacgttcaactcatgccaatcttcaggtcgttcctattccatcagccaaagcagcaagtgttcaaaacttatttcacttagctgctgacagtaacagttctgatgggagaaaatcgttgaggacccagtttgatagaaattttagcttcttctatgctgaactccctgatggtacagtcctatcacatttaattgaggagagcgagaaattcctaccccaatttggacgtgaggttatggcaggtttattgaacaaggctgacagggctgattggaggaagtgtacagatagcaaagaagaggaaacgaagatggtagaaaaattcaagagtagattcaacgaatttgatccaaataactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CwfJ_C_1 CwfJ_C_2 zf-CCCH

Protein Analysis

432

Amino Acids

49.18

Weight (kDa)

7.6

Isoelectric Point (pI)

66.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56900 AT5G56900 AT5G56900
fragaria_vesca	FvH4_1g07540 FvH4_1g07540 FvH4_1g07540
malus_domestica	MD02G1080200.v1.1 MD15G1207600.v1.1
prunus_persica	Prupe.7G209200_v2.0.a1
pyrus_communis	pycom02g06370 pycom15g18400
rosa_chinensis	RchiOBHm_Chr2g0093421
rosa_laevigata	RLG00000016398
rosa_multiflora	Rmu_sc0004881.1_g000009 Rmu_sc0021911.1_g000011
rosa_roxburghii	Rroxscaffold_2G00148120
rosa_rugosa	Rorug02G0035700
rosa_samantha	Rh2AG081700 Rh2AG082300 Rh2BG083100 Rh2CG085100 Rh2DG080700 Rh2DG080800 Rh2DG081300
rosa_wichuraiana	Rw2G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	894
Acc36I	ACCTGC	1 cut(s)	1169
AccB1I	GGYRCC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	680
AciI	CCGC	1 cut(s)	184
AclI	AACGTT	1 cut(s)	940
AclWI	GGATC	1 cut(s)	1280
AcsI	RAATTY	7 cut(s)	227, 608, 866, 1075, 1145, 1259, 1280
AcuI	CTGAAG	1 cut(s)	944
AcvI	CACGTG	1 cut(s)	146
AfaI	GTAC	5 cut(s)	165, 398, 598, 1111, 1222
AfiI	CCNNNNNNNGG	2 cut(s)	423, 1160
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	9 cut(s)	278, 518, 785, 936, 945, 1001, 1189, 1264, 1276
AjiI	CACGTC	1 cut(s)	1166
AjnI	CCWGG	2 cut(s)	674, 870
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	8 cut(s)	338, 440, 621, 708, 738, 859, 1019, 1083
AluI	AGCT	8 cut(s)	338, 440, 621, 708, 738, 859, 1019, 1083
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	4 cut(s)	315, 418, 649, 726
Alw44I	GTGCAC	1 cut(s)	759
AlwI	GGATC	1 cut(s)	1280
ApaLI	GTGCAC	1 cut(s)	759
ApeKI	GCWGC	2 cut(s)	989, 1019
ApoI	RAATTY	7 cut(s)	227, 608, 866, 1075, 1145, 1259, 1280
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	2 cut(s)	773, 1059
AsuHPI	GGTGA	4 cut(s)	92, 172, 647, 810
AvaII	GGWCC	2 cut(s)	773, 1059
BaeGI	GKGCMC	1 cut(s)	763
BanI	GGYRCC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	495
BbrPI	CACGTG	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	792
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	2 cut(s)	1001, 1006
BccI	CCATC	8 cut(s)	32, 95, 440, 869, 985, 1034, 1100, 1243
BciT130I	CCWGG	2 cut(s)	676, 872
BciVI	GTATCC	1 cut(s)	484
BcoDI	GTCTC	4 cut(s)	315, 418, 649, 726
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	1169
BfuI	GTATCC	1 cut(s)	484
BisI	GCNGC	2 cut(s)	990, 1020
BlsI	GCNGC	2 cut(s)	991, 1021
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	2 cut(s)	676, 872
Bme18I	GGWCC	2 cut(s)	773, 1059
BmgBI	CACGTC	1 cut(s)	1166
BmgT120I	GGNCC	2 cut(s)	773, 1059
BmiI	GGNNCC	2 cut(s)	124, 1061
BmrFI	CCNGG	2 cut(s)	676, 872
BmrI	ACTGGG	1 cut(s)	1057
BmsI	GCATC	2 cut(s)	266, 520
BmuI	ACTGGG	1 cut(s)	1057
BpiI	GAAGAC	1 cut(s)	792
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BpmI	CTGGAG	4 cut(s)	186, 237, 421, 462
Bpu10I	CCTNAGC	1 cut(s)	739
BsaAI	YACGTR	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	4 cut(s)	295, 325, 1204, 1234
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 1160
Bse1I	ACTGG	3 cut(s)	203, 404, 1063
BseBI	CCWGG	2 cut(s)	676, 872
BseGI	GGATG	5 cut(s)	24, 40, 535, 634, 880
BseLI	CCNNNNNNNGG	2 cut(s)	423, 1160
BseNI	ACTGG	3 cut(s)	203, 404, 1063
BseRI	GAGGAG	1 cut(s)	1148
BseSI	GKGCMC	1 cut(s)	763
BseXI	GCAGC	2 cut(s)	1001, 1006
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	763
BsiSI	CCGG	1 cut(s)	480
BslI	CCNNNNNNNGG	2 cut(s)	423, 1160
BsmAI	GTCTC	4 cut(s)	315, 418, 649, 726
BsmBI	CGTCTC	1 cut(s)	649
BsmI	GAATGC	2 cut(s)	814, 851
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp1407I	TGTACA	2 cut(s)	163, 1220
Bsp143I	GATC	3 cut(s)	6, 63, 1285
BspACI	CCGC	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	124, 1061
BspMI	ACCTGC	1 cut(s)	1169
BspPI	GGATC	1 cut(s)	1280
BspT107I	GGYRCC	1 cut(s)	122
BsrGI	TGTACA	2 cut(s)	163, 1220
BsrI	ACTGG	3 cut(s)	203, 404, 1063
BssMI	GATC	3 cut(s)	6, 63, 1285
BssSI	CACGAG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	676, 872
Bst4CI	ACNGT	6 cut(s)	18, 396, 758, 1028, 1034, 1114
Bst6I	CTCTTC	2 cut(s)	65, 1230
BstAUI	TGTACA	2 cut(s)	163, 1220
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	739, 1015
BstF5I	GGATG	5 cut(s)	24, 40, 535, 634, 880
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	3 cut(s)	9, 66, 1288
BstMAI	GTCTC	4 cut(s)	315, 418, 649, 726
BstMBI	GATC	3 cut(s)	6, 63, 1285
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 648, 657, 989, 1202
BstNI	CCWGG	2 cut(s)	676, 872
BstNSI	RCATGY	2 cut(s)	170, 322
BstSCI	CCNGG	2 cut(s)	674, 870
BstSFI	CTRYAG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	763
BstV1I	GCAGC	2 cut(s)	1001, 1006
BstV2I	GAAGAC	1 cut(s)	792
BsuI	GTATCC	1 cut(s)	484
BtrI	CACGTC	1 cut(s)	1166
BtsCI	GGATG	5 cut(s)	24, 40, 535, 634, 880
BtsIMutI	CAGTG	1 cut(s)	840
BveI	ACCTGC	1 cut(s)	1169
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	773, 1059
CseI	GACGC	1 cut(s)	666
CsiI	ACCWGGT	1 cut(s)	674
Csp6I	GTAC	5 cut(s)	164, 397, 597, 1110, 1221
CviAII	CATG	7 cut(s)	29, 167, 236, 319, 521, 526, 950
CviQI	GTAC	5 cut(s)	164, 397, 597, 1110, 1221
DdeI	CTNAG	2 cut(s)	739, 1015
DpnI	GATC	3 cut(s)	8, 65, 1287
DpnII	GATC	3 cut(s)	6, 63, 1285
Eam1104I	CTCTTC	2 cut(s)	65, 1230
EarI	CTCTTC	2 cut(s)	65, 1230
Eco47I	GGWCC	2 cut(s)	773, 1059
Eco57I	CTGAAG	1 cut(s)	944
Eco72I	CACGTG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	1059
EcoRII	CCWGG	2 cut(s)	674, 870
Esp3I	CGTCTC	1 cut(s)	649
FaeI	CATG	7 cut(s)	32, 170, 239, 322, 524, 529, 953
FalI	AAGNNNNNCTT	4 cut(s)	605, 637, 762, 794
FatI	CATG	7 cut(s)	28, 166, 235, 318, 520, 525, 949
FauI	CCCGC	1 cut(s)	191
FblI	GTMKAC	1 cut(s)	680
Fnu4HI	GCNGC	2 cut(s)	990, 1020
FokI	GGATG	5 cut(s)	11, 47, 542, 641, 887
Fsp4HI	GCNGC	2 cut(s)	990, 1020
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	2 cut(s)	990, 1020
GsuI	CTGGAG	4 cut(s)	186, 237, 421, 462
HapII	CCGG	1 cut(s)	480
HgaI	GACGC	1 cut(s)	666
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	7 cut(s)	32, 170, 239, 322, 524, 529, 953
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HinfI	GANTC	4 cut(s)	383, 389, 719, 1272
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	4 cut(s)	92, 172, 647, 810
Hpy166II	GTNNAC	5 cut(s)	494, 681, 761, 776, 1221
Hpy188I	TCNGA	3 cut(s)	382, 388, 1039
Hpy188III	TCNNGA	3 cut(s)	67, 275, 1264
Hpy8I	GTNNAC	5 cut(s)	494, 681, 761, 776, 1221
HpyAV	CCTTC	2 cut(s)	344, 626
HpyCH4III	ACNGT	6 cut(s)	18, 396, 758, 1028, 1034, 1114
HpyCH4IV	ACGT	3 cut(s)	145, 940, 1165
HpyCH4V	TGCA	9 cut(s)	119, 143, 175, 344, 356, 510, 533, 606, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 648, 657, 989, 1202
HpyF3I	CTNAG	2 cut(s)	739, 1015
HpySE526I	ACGT	3 cut(s)	145, 940, 1165
Hsp92II	CATG	7 cut(s)	32, 170, 239, 322, 524, 529, 953
HspAI	GCGC	1 cut(s)	239
Kzo9I	GATC	3 cut(s)	6, 63, 1285
LmnI	GCTCC	3 cut(s)	205, 713, 745
Lsp1109I	GCAGC	2 cut(s)	1001, 1006
LweI	GCATC	2 cut(s)	266, 520
MabI	ACCWGGT	1 cut(s)	674
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	3 cut(s)	145, 940, 1165
MaeIII	GTNAC	1 cut(s)	1028
MalI	GATC	3 cut(s)	8, 65, 1287
MboI	GATC	3 cut(s)	6, 63, 1285
MhlI	GDGCHC	1 cut(s)	763
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	187
MseI	TTAA	5 cut(s)	282, 465, 612, 882, 1127
MslI	CAYNNNNRTG	1 cut(s)	33
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	2 cut(s)	676, 872
Mva1269I	GAATGC	2 cut(s)	814, 851
MvaI	CCWGG	2 cut(s)	676, 872
MwoI	GCNNNNNNNGC	5 cut(s)	129, 648, 657, 989, 1202
NdeII	GATC	3 cut(s)	6, 63, 1285
NlaIII	CATG	7 cut(s)	32, 170, 239, 322, 524, 529, 953
NlaIV	GGNNCC	2 cut(s)	124, 1061
NspI	RCATGY	2 cut(s)	170, 322
PciI	ACATGT	1 cut(s)	318
PctI	GAATGC	2 cut(s)	814, 851
PfeI	GAWTC	3 cut(s)	383, 389, 1272
PfoI	TCCNGGA	1 cut(s)	870
PkrI	GCNGC	2 cut(s)	991, 1021
PleI	GAGTC	1 cut(s)	727
PmaCI	CACGTG	1 cut(s)	146
PmlI	CACGTG	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	727
Ppu21I	YACGTR	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	1059
PscI	ACATGT	1 cut(s)	318
PsiI	TTATAA	1 cut(s)	894
Psp1406I	AACGTT	1 cut(s)	940
Psp5II	RGGWCCY	1 cut(s)	1059
Psp6I	CCWGG	2 cut(s)	674, 870
PspCI	CACGTG	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	674, 870
PspN4I	GGNNCC	2 cut(s)	124, 1061
PspPI	GGNCC	2 cut(s)	773, 1059
PspPPI	RGGWCCY	1 cut(s)	1059
RsaI	GTAC	5 cut(s)	165, 398, 598, 1111, 1222
RsaNI	GTAC	5 cut(s)	164, 397, 597, 1110, 1221
RseI	CAYNNNNRTG	1 cut(s)	33
SalI	GTCGAC	1 cut(s)	679
SaqAI	TTAA	5 cut(s)	282, 465, 612, 882, 1127
SatI	GCNGC	2 cut(s)	990, 1020
Sau3AI	GATC	3 cut(s)	6, 63, 1285
Sau96I	GGNCC	2 cut(s)	773, 1059
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	2 cut(s)	676, 872
SduI	GDGCHC	1 cut(s)	763
SexAI	ACCWGGT	1 cut(s)	674
SfaNI	GCATC	2 cut(s)	266, 520
SfcI	CTRYAG	1 cut(s)	14
SinI	GGWCC	2 cut(s)	773, 1059
SmiMI	CAYNNNNRTG	1 cut(s)	33
SsiI	CCGC	1 cut(s)	184
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	2 cut(s)	674, 870
TaaI	ACNGT	6 cut(s)	18, 396, 758, 1028, 1034, 1114
TaiI	ACGT	3 cut(s)	148, 943, 1168
TaqI	TCGA	5 cut(s)	5, 66, 327, 564, 680
TatI	WGTACW	3 cut(s)	163, 396, 1220
TfiI	GAWTC	3 cut(s)	383, 389, 1272
Tru1I	TTAA	5 cut(s)	282, 465, 612, 882, 1127
Tru9I	TTAA	5 cut(s)	282, 465, 612, 882, 1127
TscAI	CASTG	1 cut(s)	847
TseI	GCWGC	2 cut(s)	989, 1019
TspDTI	ATGAA	5 cut(s)	35, 178, 224, 587, 645
TspRI	CASTG	1 cut(s)	847
VneI	GTGCAC	1 cut(s)	759
VpaK11BI	GGWCC	2 cut(s)	773, 1059
XapI	RAATTY	7 cut(s)	227, 608, 866, 1075, 1145, 1259, 1280
XceI	RCATGY	2 cut(s)	170, 322
XmiI	GTMKAC	1 cut(s)	680
XspI	CTAG	1 cut(s)	366
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.