Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007131

Physical Location & Seq

Genomic Coordinates Reverse (-)

16500967 .. 16503477

Gene Structure 2511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1207600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGATCACTAATAGAGCAAATACATCTGATGTTCCCCCTGTAGCCTATGAGCCTTTTGGCAGTGACAATATTGTGGCAGAGCTAGTAGCTGAGATCAAACCGCGCTATCATATTGCAGGCACGAAGGGTGTGTTCTATGCACGTGAACCGTACGCTAATGTCGAGGCTGTACATGTGACCCGCTTTTTGGGTCTTGCTCCAGTTGGAAACAAAGATAAACAGAAATTTATTCATGCGCTTTCTCCAACTCCAGCATCTACAATGTCTGCTATGGAGATTAGGACAAAATCGACAACCACTACCTTATCTCCATACACATATGAGGAGAAAACAGCTCATTCAATGGAAGCTGGGAAGAGGTCTAGTGATAGTATTTCCAATTCGCAGTACTGGAGATATGATGTCTCCCAGAAAAGGCAGAAACATGGAGATGGTAATAGGCTGTGTTTTAAGTTTCATGATGTAGATGCAAGAGAACAGTCGTTGAGAGGTGTTTGTTTTGAAGTTATGAACAAAGGAAAATGTGAAAGGGGCCCAGATTGCAAATTTAAGCACAGCTTACAGGATGAAGGTGAGAGCAATTCTCAACAGAGACGTGGATCTGGAAATGCGAACAGTAACAGGACAACAGAGTGTTGGTTTTGTTTGTCAAGCCCCAAAGTTGAATCACATCTAATTATCAGCATAGGGGAGCATTACTATTGTGCCCTTGCTAAAGGCCCACTCGTTGAAGATCACGTATTGCTAATCCCTATAGGCCATTCACCGAATACTGTTTCTCTACCCTCAGAATGTGAAATTGAGCTTGATAAGTTTCAGAATGCTCTGAAGAAGTATTATAACAAACAAGGAATGGAAGTTGTTTTCTTCGAATGGGCTTCAAGACGTACCACTCATGCTAATCTTCAGGCCGTTCCTGTTCCTTCAGCCAAAGCAGCTGACGTTAAAAATATATTTAACTTAGCAGCTGAAGGGCAGGGCTTCAAGTTCACGACCATGAAATCCAGTAATAATTATGATGGGAGAATACTGTTAGGGGAACAGTTCGACAGAAATTTTAGTTTTTTCTATGCTCAGCTCCCTGATGGTACAATCCTATCACATTCGATTGAAGAGAATGAGAAATTCTTACCTCAATTTGGACGTCAGGTTATGGCAGGTCTGTTGAAGAAGGCTGACAGGGATGATTGGAAGAATTGTACAGATAGCAAAGAAGAGGAAACCAAGATGGTGGAAGATTTCAAGAGTGGATTTGGAGAATTCGATCCAAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CwfJ_C_1 CwfJ_C_2 zf-CCCH

Protein Analysis

426

Amino Acids

47.88

Weight (kDa)

6.9

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CwfJ_C_1	PF04677	204 - 319	5.8e-39	Protein similar to CwfJ C-terminal
CwfJ_C_2	PF04676	347 - 422	2.6e-16	Protein similar to CwfJ C-terminus 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56900 AT5G56900 AT5G56900
fragaria_vesca	FvH4_1g07540 FvH4_1g07540 FvH4_1g07540
malus_domestica	MD02G1080200.v1.1 MD15G1207600.v1.1
prunus_persica	Prupe.7G209200_v2.0.a1
pyrus_communis	pycom02g06370 pycom15g18400
rosa_chinensis	RchiOBHm_Chr2g0093421
rosa_laevigata	RLG00000016398
rosa_multiflora	Rmu_sc0004881.1_g000009 Rmu_sc0021911.1_g000011
rosa_roxburghii	Rroxscaffold_2G00148120
rosa_rugosa	Rorug02G0035700
rosa_samantha	Rh2AG081700 Rh2AG082300 Rh2BG083100 Rh2CG085100 Rh2DG080700 Rh2DG080800 Rh2DG081300
rosa_wichuraiana	Rw2G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
AatII	GACGTC	1 cut(s)	1147
Acc36I	ACCTGC	1 cut(s)	1148
AccII	CGCG	1 cut(s)	103
AciI	CCGC	2 cut(s)	101, 181
AclWI	GGATC	2 cut(s)	607, 1259
AcsI	RAATTY	5 cut(s)	224, 545, 1054, 1124, 1259
AcuI	CTGAAG	4 cut(s)	848, 890, 909, 990
AcvI	CACGTG	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	1144
AfaI	GTAC	6 cut(s)	152, 171, 389, 889, 1090, 1201
AfiI	CCNNNNNNNGG	3 cut(s)	187, 414, 1139
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	9 cut(s)	342, 503, 665, 731, 882, 985, 1112, 1168, 1243
AjiI	CACGTC	1 cut(s)	596
AluBI	AGCT	9 cut(s)	82, 89, 335, 350, 558, 805, 938, 968, 1078
AluI	AGCT	9 cut(s)	82, 89, 335, 350, 558, 805, 938, 968, 1078
Alw26I	GTCTC	2 cut(s)	409, 586
AlwI	GGATC	2 cut(s)	607, 1259
AoxI	GGCC	4 cut(s)	532, 718, 757, 909
ApaI	GGGCCC	1 cut(s)	536
ApeKI	GCWGC	2 cut(s)	935, 965
ApoI	RAATTY	5 cut(s)	224, 545, 1054, 1124, 1259
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AspLEI	GCGC	2 cut(s)	105, 238
AspS9I	GGNCC	3 cut(s)	532, 533, 719
AsuHPI	GGTGA	2 cut(s)	584, 756
AsuII	TTCGAA	1 cut(s)	870
BaeGI	GKGCMC	2 cut(s)	536, 709
BanII	GRGCYC	1 cut(s)	536
BbrPI	CACGTG	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	947, 977
BccI	CCATC	4 cut(s)	425, 1013, 1079, 1222
BceAI	ACGGC	1 cut(s)	896
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	409, 586
BfaI	CTAG	2 cut(s)	83, 363
BfmI	CTRYAG	2 cut(s)	39, 753
BfuAI	ACCTGC	1 cut(s)	1148
BisI	GCNGC	2 cut(s)	936, 966
BlpI	GCTNAGC	1 cut(s)	1074
BlsI	GCNGC	2 cut(s)	937, 967
BmcAI	AGTACT	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	596
BmgT120I	GGNCC	3 cut(s)	532, 533, 719
BmiI	GGNNCC	2 cut(s)	533, 534
BmsI	GCATC	2 cut(s)	263, 457
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
BpmI	CTGGAG	3 cut(s)	183, 234, 412
Bpu1102I	GCTNAGC	1 cut(s)	1074
Bpu14I	TTCGAA	1 cut(s)	870
BsaAI	YACGTR	2 cut(s)	143, 739
BsaHI	GRCGYC	1 cut(s)	1144
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 414, 1139
Bse1I	ACTGG	3 cut(s)	200, 395, 1005
BseGI	GGATG	2 cut(s)	571, 1189
BseLI	CCNNNNNNNGG	3 cut(s)	187, 414, 1139
BseMII	CTCAG	3 cut(s)	81, 801, 1088
BseNI	ACTGG	3 cut(s)	200, 395, 1005
BseRI	GAGGAG	1 cut(s)	338
BseSI	GKGCMC	2 cut(s)	536, 709
BseXI	GCAGC	2 cut(s)	947, 977
BseYI	CCCAGC	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	4 cut(s)	534, 720, 759, 911
BsiWI	CGTACG	1 cut(s)	150
BslI	CCNNNNNNNGG	3 cut(s)	187, 414, 1139
BsmAI	GTCTC	2 cut(s)	409, 586
BsmBI	CGTCTC	1 cut(s)	586
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	4 cut(s)	534, 720, 759, 911
Bsp119I	TTCGAA	1 cut(s)	870
Bsp120I	GGGCCC	1 cut(s)	532
Bsp1286I	GDGCHC	2 cut(s)	536, 709
Bsp1407I	TGTACA	2 cut(s)	169, 1199
Bsp143I	GATC	5 cut(s)	3, 93, 599, 733, 1264
Bsp1720I	GCTNAGC	1 cut(s)	1074
BspACI	CCGC	2 cut(s)	101, 181
BspANI	GGCC	4 cut(s)	534, 720, 759, 911
BspCNI	CTCAG	3 cut(s)	82, 800, 1087
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	533, 534
BspMI	ACCTGC	1 cut(s)	1148
BspPI	GGATC	2 cut(s)	607, 1259
BspT104I	TTCGAA	1 cut(s)	870
BsrGI	TGTACA	2 cut(s)	169, 1199
BsrI	ACTGG	3 cut(s)	200, 395, 1005
BssMI	GATC	5 cut(s)	3, 93, 599, 733, 1264
BssNI	GRCGYC	1 cut(s)	1144
Bst4CI	ACNGT	6 cut(s)	150, 480, 617, 775, 1032, 1044
Bst6I	CTCTTC	3 cut(s)	350, 1107, 1209
BstACI	GRCGYC	1 cut(s)	1144
BstAUI	TGTACA	2 cut(s)	169, 1199
BstBAI	YACGTR	2 cut(s)	143, 739
BstBI	TTCGAA	1 cut(s)	870
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	4 cut(s)	90, 787, 961, 1074
BstF5I	GGATG	2 cut(s)	571, 1189
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	2 cut(s)	105, 238
BstKTI	GATC	5 cut(s)	6, 96, 602, 736, 1267
BstMAI	GTCTC	2 cut(s)	409, 586
BstMBI	GATC	5 cut(s)	3, 93, 599, 733, 1264
BstMWI	GCNNNNNNNGC	2 cut(s)	540, 935
BstNSI	RCATGY	1 cut(s)	176
BstSFI	CTRYAG	2 cut(s)	39, 753
BstSLI	GKGCMC	2 cut(s)	536, 709
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	947, 977
BstX2I	RGATCY	1 cut(s)	599
BstXI	CCANNNNNNTGG	1 cut(s)	1231
BstYI	RGATCY	1 cut(s)	599
BsuRI	GGCC	4 cut(s)	534, 720, 759, 911
BtrI	CACGTC	1 cut(s)	596
BtsCI	GGATG	2 cut(s)	571, 1189
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	1148
Cac8I	GCNNGC	1 cut(s)	118
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	2 cut(s)	105, 238
Cfr13I	GGNCC	3 cut(s)	532, 533, 719
Csp6I	GTAC	6 cut(s)	151, 170, 388, 888, 1089, 1200
CviAII	CATG	6 cut(s)	173, 233, 425, 458, 896, 997
CviQI	GTAC	6 cut(s)	151, 170, 388, 888, 1089, 1200
DdeI	CTNAG	4 cut(s)	90, 787, 961, 1074
DpnI	GATC	5 cut(s)	5, 95, 601, 735, 1266
DpnII	GATC	5 cut(s)	3, 93, 599, 733, 1264
Eam1104I	CTCTTC	3 cut(s)	350, 1107, 1209
EarI	CTCTTC	3 cut(s)	350, 1107, 1209
Eco24I	GRGCYC	1 cut(s)	536
Eco57I	CTGAAG	4 cut(s)	848, 890, 909, 990
Eco72I	CACGTG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	1259
EcoT38I	GRGCYC	1 cut(s)	536
Esp3I	CGTCTC	1 cut(s)	586
FaeI	CATG	6 cut(s)	176, 236, 428, 461, 899, 1000
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FatI	CATG	6 cut(s)	172, 232, 424, 457, 895, 996
FauI	CCCGC	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	936, 966
FokI	GGATG	2 cut(s)	578, 1196
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	2 cut(s)	936, 966
FspBI	CTAG	2 cut(s)	83, 363
GlaI	GCGC	2 cut(s)	104, 237
GluI	GCNGC	2 cut(s)	936, 966
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	3 cut(s)	183, 234, 412
HaeIII	GGCC	4 cut(s)	534, 720, 759, 911
HhaI	GCGC	2 cut(s)	105, 238
Hin1I	GRCGYC	1 cut(s)	1144
Hin1II	CATG	6 cut(s)	176, 236, 428, 461, 899, 1000
Hin6I	GCGC	2 cut(s)	103, 236
HinP1I	GCGC	2 cut(s)	103, 236
HinfI	GANTC	1 cut(s)	665
HphI	GGTGA	2 cut(s)	584, 756
Hpy166II	GTNNAC	2 cut(s)	146, 990
Hpy188I	TCNGA	4 cut(s)	28, 790, 819, 828
Hpy188III	TCNNGA	5 cut(s)	458, 603, 882, 991, 1243
Hpy8I	GTNNAC	2 cut(s)	146, 990
HpyAV	CCTTC	5 cut(s)	118, 563, 933, 965, 1165
HpyCH4III	ACNGT	6 cut(s)	150, 480, 617, 775, 1032, 1044
HpyCH4IV	ACGT	6 cut(s)	142, 595, 738, 886, 942, 1144
HpyCH4V	TGCA	4 cut(s)	116, 140, 470, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	540, 935
HpyF3I	CTNAG	4 cut(s)	90, 787, 961, 1074
HpySE526I	ACGT	6 cut(s)	142, 595, 738, 886, 942, 1144
Hsp92I	GRCGYC	1 cut(s)	1144
Hsp92II	CATG	6 cut(s)	176, 236, 428, 461, 899, 1000
HspAI	GCGC	2 cut(s)	103, 236
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 93, 599, 733, 1264
LmnI	GCTCC	3 cut(s)	202, 691, 1083
Lsp1109I	GCAGC	2 cut(s)	947, 977
LweI	GCATC	2 cut(s)	263, 457
MaeI	CTAG	2 cut(s)	83, 363
MaeII	ACGT	6 cut(s)	142, 595, 738, 886, 942, 1144
MaeIII	GTNAC	3 cut(s)	62, 175, 617
MalI	GATC	5 cut(s)	5, 95, 601, 735, 1266
MboI	GATC	5 cut(s)	3, 93, 599, 733, 1264
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	2 cut(s)	536, 709
MmeI	TCCRAC	2 cut(s)	184, 269
MnlI	CCTC	7 cut(s)	157, 316, 351, 482, 796, 1143, 1210
MseI	TTAA	4 cut(s)	450, 549, 945, 957
MslI	CAYNNNNRTG	2 cut(s)	429, 995
MspA1I	CMGCKG	2 cut(s)	938, 968
Mva1269I	GAATGC	1 cut(s)	826
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	540, 935
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	5 cut(s)	3, 93, 599, 733, 1264
NlaIII	CATG	6 cut(s)	176, 236, 428, 461, 899, 1000
NlaIV	GGNNCC	2 cut(s)	533, 534
NmuCI	GTSAC	2 cut(s)	62, 175
NspI	RCATGY	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	870
PagI	TCATGA	1 cut(s)	457
PciI	ACATGT	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	826
PfeI	GAWTC	1 cut(s)	665
Pfl23II	CGTACG	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	937, 967
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
Ppu21I	YACGTR	2 cut(s)	143, 739
PscI	ACATGT	1 cut(s)	172
PsiI	TTATAA	1 cut(s)	840
PspCI	CACGTG	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	350
PspLI	CGTACG	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	533, 534
PspOMI	GGGCCC	1 cut(s)	532
PspPI	GGNCC	3 cut(s)	532, 533, 719
PsuI	RGATCY	1 cut(s)	599
PvuII	CAGCTG	2 cut(s)	938, 968
RsaI	GTAC	6 cut(s)	152, 171, 389, 889, 1090, 1201
RsaNI	GTAC	6 cut(s)	151, 170, 388, 888, 1089, 1200
RseI	CAYNNNNRTG	2 cut(s)	429, 995
SaqAI	TTAA	4 cut(s)	450, 549, 945, 957
SatI	GCNGC	2 cut(s)	936, 966
Sau3AI	GATC	5 cut(s)	3, 93, 599, 733, 1264
Sau96I	GGNCC	3 cut(s)	532, 533, 719
ScaI	AGTACT	1 cut(s)	389
SduI	GDGCHC	2 cut(s)	536, 709
SfaNI	GCATC	2 cut(s)	263, 457
SfcI	CTRYAG	2 cut(s)	39, 753
SfuI	TTCGAA	1 cut(s)	870
SmiMI	CAYNNNNRTG	2 cut(s)	429, 995
SsiI	CCGC	2 cut(s)	101, 181
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	2 cut(s)	83, 363
TaaI	ACNGT	6 cut(s)	150, 480, 617, 775, 1032, 1044
TaiI	ACGT	6 cut(s)	145, 598, 741, 889, 945, 1147
TaqI	TCGA	6 cut(s)	162, 290, 870, 1047, 1106, 1263
TatI	WGTACW	3 cut(s)	169, 387, 1199
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	4 cut(s)	450, 549, 945, 957
Tru9I	TTAA	4 cut(s)	450, 549, 945, 957
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	2 cut(s)	62, 175
TseI	GCWGC	2 cut(s)	935, 965
Tsp45I	GTSAC	2 cut(s)	62, 175
TspDTI	ATGAA	5 cut(s)	221, 446, 524, 582, 1013
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	5 cut(s)	224, 545, 1054, 1124, 1259
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	2 cut(s)	83, 363
ZraI	GACGTC	1 cut(s)	1145
ZrmI	AGTACT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.