Rh2DG080800

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007131
Physical Location & Seq
Forward (+)
6309729 .. 6310785
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG080800.1

Sequence Viewer

Length: 645 bp
ATGAACAAAGGAAAGTGTGAAAGGGGTACTGATTGCAAATTTAAGCACAGCTTACAGGATGAAGGTGAAAGCAATTCTCACAAGAGACGCACTGGAAATGCTACCAGGTCGACAGAGTGCTGGTTTTGTTTGTCAAGCTCCAAAATAGAGTCTCATCTATTTATCAGCTTAGGGGAGCATTACTACTGTGCACTTGCTAAAGGTCCACTTGTTGAAGACCACCTATTGCTAATCCCTATTGGGCATTCACCCAATACCCTTTCTCTACCCTCTGAATGCGAGATTGAGCTTGGTAAATTCCAGGATGGTCTTAAAAAGTTTTATAAGAAACAAGACAAGGAAGTAGTTTTCTTTGAGTGGGCTTCAAAACGTTCAACTCATGCCAATCTTCAGGTCGTTCCTATTCCATCAGCCAAAGCAGCAAGTGTTCAAAACTTATTTCACTTAGCTGCTGACAGGTTCGAATTCCAATTTACGACCACGAAATTCAGTAACAGTTCTGATGGGAGAAAATCGTTGAGGACCCAGTTTGATAGAAATTTTAGCTTCTTCTATGCTGAACTCCCTGATGGTACAGTCCTATCACATTTAATTGAGGAGAGCGAGAAATTCCTACCCCAATTTGGGCGTGAGGTAAGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CwfJ_C_1 CwfJ_C_2 zf-CCCH

Protein Analysis

214

Amino Acids

24.35

Weight (kDa)

7.67

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CwfJ_C_1 PF04677 30 - 147 1.2e-37 Protein similar to CwfJ C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AccI GTMKAC 1 cut(s) 110
AclI AACGTT 1 cut(s) 370
AcsI RAATTY 6 cut(s) 38, 296, 464, 485, 538, 608
AcuI CTGAAG 1 cut(s) 374
AfaI GTAC 2 cut(s) 28, 574
AfiI CCNNNNNNNGG 2 cut(s) 623, 624
AgsI TTSAA 4 cut(s) 215, 366, 375, 431
AjnI CCWGG 2 cut(s) 104, 300
AluBI AGCT 6 cut(s) 51, 138, 168, 289, 449, 546
AluI AGCT 6 cut(s) 51, 138, 168, 289, 449, 546
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 79, 156
Alw44I GTGCAC 1 cut(s) 189
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 419, 449
ApoI RAATTY 6 cut(s) 38, 296, 464, 485, 538, 608
AspS9I GGNCC 2 cut(s) 203, 522
AsuHPI GGTGA 2 cut(s) 77, 240
AsuII TTCGAA 1 cut(s) 462
AvaII GGWCC 2 cut(s) 203, 522
BaeGI GKGCMC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 431, 436
BccI CCATC 4 cut(s) 299, 415, 497, 563
BciT130I CCWGG 2 cut(s) 106, 302
BcoDI GTCTC 2 cut(s) 79, 156
BisI GCNGC 2 cut(s) 420, 450
BlsI GCNGC 2 cut(s) 421, 451
Bme1390I CCNGG 2 cut(s) 106, 302
Bme18I GGWCC 2 cut(s) 203, 522
BmgT120I GGNCC 2 cut(s) 203, 522
BmiI GGNNCC 1 cut(s) 524
BmrFI CCNGG 2 cut(s) 106, 302
BmrI ACTGGG 1 cut(s) 520
BmuI ACTGGG 1 cut(s) 520
BpiI GAAGAC 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 169
Bpu14I TTCGAA 1 cut(s) 462
Bsc4I CCNNNNNNNGG 2 cut(s) 623, 624
Bse1I ACTGG 2 cut(s) 97, 526
BseBI CCWGG 2 cut(s) 106, 302
BseGI GGATG 2 cut(s) 64, 310
BseLI CCNNNNNNNGG 2 cut(s) 623, 624
BseNI ACTGG 2 cut(s) 97, 526
BseRI GAGGAG 1 cut(s) 611
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 2 cut(s) 431, 436
BsiHKAI GWGCWC 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 623, 624
BsmAI GTCTC 2 cut(s) 79, 156
BsmBI CGTCTC 1 cut(s) 79
BsmI GAATGC 2 cut(s) 244, 281
Bsp119I TTCGAA 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 524
BspT104I TTCGAA 1 cut(s) 462
BsrI ACTGG 2 cut(s) 97, 526
Bst2UI CCWGG 2 cut(s) 106, 302
Bst4CI ACNGT 3 cut(s) 188, 497, 577
BstBI TTCGAA 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 169, 445
BstF5I GGATG 2 cut(s) 64, 310
BstMAI GTCTC 2 cut(s) 79, 156
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 2 cut(s) 106, 302
BstSCI CCNGG 2 cut(s) 104, 300
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 431, 436
BstV2I GAAGAC 1 cut(s) 222
BtsCI GGATG 2 cut(s) 64, 310
BtsIMutI CAGTG 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 203, 522
CseI GACGC 1 cut(s) 96
CsiI ACCWGGT 1 cut(s) 104
Csp6I GTAC 2 cut(s) 27, 573
CviAII CATG 1 cut(s) 380
CviJI RGCY 8 cut(s) 51, 138, 168, 289, 362, 413, 449, 546
CviKI_1 RGCY 8 cut(s) 51, 138, 168, 289, 362, 413, 449, 546
CviQI GTAC 2 cut(s) 27, 573
DdeI CTNAG 2 cut(s) 169, 445
Eco47I GGWCC 2 cut(s) 203, 522
Eco57I CTGAAG 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 522
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 104, 300
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 1 cut(s) 383
FaiI YATR 4 cut(s) 324, 381, 555, 643
FalI AAGNNNNNCTT 4 cut(s) 35, 67, 192, 224
FatI CATG 1 cut(s) 379
FblI GTMKAC 1 cut(s) 110
Fnu4HI GCNGC 2 cut(s) 420, 450
FokI GGATG 2 cut(s) 71, 317
Fsp4HI GCNGC 2 cut(s) 420, 450
GluI GCNGC 2 cut(s) 420, 450
HgaI GACGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 383
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 1 cut(s) 149
HphI GGTGA 2 cut(s) 77, 240
Hpy166II GTNNAC 3 cut(s) 111, 191, 206
Hpy188I TCNGA 2 cut(s) 274, 502
Hpy8I GTNNAC 3 cut(s) 111, 191, 206
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 3 cut(s) 188, 497, 577
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 2 cut(s) 36, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 2 cut(s) 169, 445
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 1 cut(s) 383
LmnI GCTCC 2 cut(s) 143, 175
Lsp1109I GCAGC 2 cut(s) 431, 436
MabI ACCWGGT 1 cut(s) 104
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 491
MboII GAAGA 3 cut(s) 227, 380, 541
MhlI GDGCHC 1 cut(s) 193
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 4 cut(s) 280, 513, 589, 625
MseI TTAA 3 cut(s) 42, 312, 590
MspR9I CCNGG 2 cut(s) 106, 302
Mva1269I GAATGC 2 cut(s) 244, 281
MvaI CCWGG 2 cut(s) 106, 302
MwoI GCNNNNNNNGC 1 cut(s) 419
NlaIII CATG 1 cut(s) 383
NlaIV GGNNCC 1 cut(s) 524
NspV TTCGAA 1 cut(s) 462
PctI GAATGC 2 cut(s) 244, 281
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 2 cut(s) 421, 451
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PpuMI RGGWCCY 1 cut(s) 522
PsiI TTATAA 1 cut(s) 324
Psp1406I AACGTT 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 104, 300
PspGI CCWGG 2 cut(s) 104, 300
PspN4I GGNNCC 1 cut(s) 524
PspPI GGNCC 2 cut(s) 203, 522
PspPPI RGGWCCY 1 cut(s) 522
RsaI GTAC 2 cut(s) 28, 574
RsaNI GTAC 2 cut(s) 27, 573
SalI GTCGAC 1 cut(s) 109
SaqAI TTAA 3 cut(s) 42, 312, 590
SatI GCNGC 2 cut(s) 420, 450
Sau96I GGNCC 2 cut(s) 203, 522
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 106, 302
SduI GDGCHC 1 cut(s) 193
SexAI ACCWGGT 1 cut(s) 104
SfuI TTCGAA 1 cut(s) 462
SinI GGWCC 2 cut(s) 203, 522
StyD4I CCNGG 2 cut(s) 104, 300
TaaI ACNGT 3 cut(s) 188, 497, 577
TaiI ACGT 1 cut(s) 373
TaqI TCGA 2 cut(s) 110, 462
Tru1I TTAA 3 cut(s) 42, 312, 590
Tru9I TTAA 3 cut(s) 42, 312, 590
TscAI CASTG 1 cut(s) 97
TseI GCWGC 2 cut(s) 419, 449
TspDTI ATGAA 2 cut(s) 17, 75
TspRI CASTG 1 cut(s) 97
VneI GTGCAC 1 cut(s) 189
VpaK11BI GGWCC 2 cut(s) 203, 522
XapI RAATTY 6 cut(s) 38, 296, 464, 485, 538, 608
XmiI GTMKAC 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.