AT5G57100

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007221
Physical Location & Seq
Reverse (-)
23106298 .. 23108883
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57100.3

Sequence Viewer

Length: 1173 bp
ATGTTACTGACACCTAAGATGTTTAGTTCTTGGCTTCGACAAGATGTGAAGAAGATCCTCAAACGCAAAGACAGTGATGCTGGTGAACGAGGAAAAGCATTGGAGGACTTGAGAGCATCGTTATTCAACAGATTCCGTTCACCGGAAACTCCAAAGAGACAGCAACAACAACAACATCGTATCTGTGGCCCAACTGTTGCTCTTACTTTCAATTTCGTTGTTGCTATTAGCATTATCTTCATGAACAAATGGGTTCTTAAAAATATAGGCTTTGAGTTTCCAGTGTTCCTCACATTCATTCACTACATTGTAGCTTATCTACTAATGGCTCTTCTCAAATCCTTTTCGCTCCTTCCTGCTTCACCGCCTTCCACGAAATCATCGTTGCTTCCGCTCTATACTCTTGGCATTGTAATGTCACTCTCTACAGGACTAGCTAATGTTAGCCTTAAGTATAACAGTGTTGGATTCTACCAGATGGCGAAAATTGCTGTTACGCCTTCTATCGTGTTTGCAGAGTTCTTGTGGTATAGAAAGAGAGTTTCTTTCATGAAGGTGGTATCACTTACAGTTGTATCTGTGGGAGTTGCGGTTGCGACTGTAACAGATTTACAGTTTAGTCTGTTTGGTGCTTGTGTAGCATTCGCATGGATCATACCAAGCGCAACTAACAAAATCTTGTGGTCTAATATGCAGCAACGAGAAAACTGGACTGCTTTGGCGTTGATGTGGAAAACGACGCCAATCACTCTGTTGTTTCTTGTATCGATGATTCCGTTCTTGGATCCGCCCGGTGCTCTATCGTTCAATTGGAGCTTAACCAACACATCTGCCATTCTTGTTTCTGCTCTTCTCGGATTCTTTCTTCAATGGTCAGGAGCCTTAGCTCTAGGAGCAACTTCTGCAATTACGCATGTGGTGCTAGGACAGTTCAAGACTTGTGTCCTCCTCCTTGGAAACTACTACATTTTCGGGTCGAATAGTGGTTTCATTAGCGTTGGCGGTGCGTTTGTGGCGATTATGGGAACTTCGTTATATACATACCTTAACACGAGAGGTCAATCTCTTAAAACTTCGTCTTCTTCTTCTGCTCTCTCGGAGAAGAAGTCAAGATTCAGTGATCTTAAGGATGATGACAAGAATCTTGAACCTTACGGCTCCGAAGCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

390

Amino Acids

43.15

Weight (kDa)

9.81

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 69 - 253 5.2e-10 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 394
AciI CCGC 5 cut(s) 365, 392, 590, 788, 1002
AclWI GGATC 4 cut(s) 49, 659, 779, 792
AcyI GRCGYC 1 cut(s) 740
AfiI CCNNNNNNNGG 1 cut(s) 142
AflII CTTAAG 2 cut(s) 449, 1124
AgsI TTSAA 6 cut(s) 127, 211, 808, 869, 934, 1148
AluBI AGCT 5 cut(s) 314, 437, 816, 887, 1166
AluI AGCT 5 cut(s) 314, 437, 816, 887, 1166
Alw21I GWGCWC 1 cut(s) 799
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 4 cut(s) 49, 659, 779, 792
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 694
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 792
AsuHPI GGTGA 3 cut(s) 95, 132, 354
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BamHI GGATCC 1 cut(s) 784
BauI CACGAG 1 cut(s) 1051
BbsI GAAGAC 1 cut(s) 1071
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 1 cut(s) 706
BccI CCATC 1 cut(s) 472
BceAI ACGGC 1 cut(s) 1171
BcnI CCSGG 1 cut(s) 792
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 4 cut(s) 434, 890, 923, 1171
BfmI CTRYAG 1 cut(s) 426
BfrI CTTAAG 2 cut(s) 449, 1124
BisI GCNGC 1 cut(s) 695
BlsI GCNGC 1 cut(s) 696
Bme1390I CCNGG 1 cut(s) 792
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 3 cut(s) 786, 880, 1159
BmrFI CCNGG 1 cut(s) 792
BmsI GCATC 2 cut(s) 67, 125
BoxI GACNNNNGTC 1 cut(s) 941
BpiI GAAGAC 1 cut(s) 1071
Bpu10I CCTNAGC 1 cut(s) 883
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 792
Bsa29I ATCGAT 1 cut(s) 767
BsaHI GRCGYC 1 cut(s) 740
BsaJI CCNNGG 1 cut(s) 952
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 4 cut(s) 576, 606, 1091, 1121
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 2 cut(s) 281, 713
BseCI ATCGAT 1 cut(s) 767
BseDI CCNNGG 1 cut(s) 952
BseGI GGATG 1 cut(s) 1135
BseLI CCNNNNNNNGG 1 cut(s) 142
BseNI ACTGG 2 cut(s) 281, 713
BseRI GAGGAG 1 cut(s) 938
BseXI GCAGC 1 cut(s) 706
BshFI GGCC 1 cut(s) 189
BshVI ATCGAT 1 cut(s) 767
BsiHKAI GWGCWC 1 cut(s) 799
BsiSI CCGG 2 cut(s) 143, 792
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 799
Bsp143I GATC 4 cut(s) 54, 651, 784, 1120
BspACI CCGC 5 cut(s) 365, 392, 590, 788, 1002
BspANI GGCC 1 cut(s) 189
BspDI ATCGAT 1 cut(s) 767
BspHI TCATGA 2 cut(s) 240, 549
BspLI GGNNCC 3 cut(s) 786, 880, 1159
BspPI GGATC 4 cut(s) 49, 659, 779, 792
BspQI GCTCTTC 2 cut(s) 336, 855
BspTI CTTAAG 2 cut(s) 449, 1124
BsrBI CCGCTC 1 cut(s) 394
BsrI ACTGG 2 cut(s) 281, 713
BssECI CCNNGG 1 cut(s) 952
BssMI GATC 4 cut(s) 54, 651, 784, 1120
BssNI GRCGYC 1 cut(s) 740
BssSI CACGAG 1 cut(s) 1051
BssT1I CCWWGG 1 cut(s) 952
Bst2BI CACGAG 1 cut(s) 1051
Bst4CI ACNGT 7 cut(s) 74, 196, 461, 571, 601, 615, 930
Bst6I CTCTTC 2 cut(s) 336, 855
BstACI GRCGYC 1 cut(s) 740
BstAFI CTTAAG 2 cut(s) 449, 1124
BstAPI GCANNNNNTGC 2 cut(s) 902, 919
BstDEI CTNAG 2 cut(s) 15, 883
BstF5I GGATG 1 cut(s) 1135
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 4 cut(s) 57, 654, 787, 1123
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 4 cut(s) 54, 651, 784, 1120
BstMWI GCNNNNNNNGC 6 cut(s) 488, 638, 893, 902, 919, 1013
BstNSI RCATGY 1 cut(s) 917
BstPAI GACNNNNGTC 1 cut(s) 941
BstSCI CCNGG 1 cut(s) 790
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 706
BstV2I GAAGAC 1 cut(s) 1071
BstX2I RGATCY 2 cut(s) 54, 784
BstYI RGATCY 2 cut(s) 54, 784
Bsu15I ATCGAT 1 cut(s) 767
BsuRI GGCC 1 cut(s) 189
BsuTUI ATCGAT 1 cut(s) 767
BtsCI GGATG 1 cut(s) 1135
BtsIMutI CAGTG 4 cut(s) 79, 288, 466, 1123
CciI TCATGA 2 cut(s) 240, 549
CfoI GCGC 1 cut(s) 665
Cfr13I GGNCC 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 767
CseI GACGC 1 cut(s) 748
CviAII CATG 4 cut(s) 241, 550, 648, 914
DdeI CTNAG 2 cut(s) 15, 883
DpnI GATC 4 cut(s) 56, 653, 786, 1122
DpnII GATC 4 cut(s) 54, 651, 784, 1120
Eam1104I CTCTTC 2 cut(s) 336, 855
EarI CTCTTC 2 cut(s) 336, 855
EciI GGCGGA 1 cut(s) 777
Eco130I CCWWGG 1 cut(s) 952
EcoT14I CCWWGG 1 cut(s) 952
ErhI CCWWGG 1 cut(s) 952
FaeI CATG 4 cut(s) 244, 553, 651, 917
FatI CATG 4 cut(s) 240, 549, 647, 913
Fnu4HI GCNGC 1 cut(s) 695
FokI GGATG 1 cut(s) 1142
Fsp4HI GCNGC 1 cut(s) 695
FspBI CTAG 4 cut(s) 434, 890, 923, 1171
GlaI GCGC 1 cut(s) 664
GluI GCNGC 1 cut(s) 695
HaeIII GGCC 1 cut(s) 189
HapII CCGG 2 cut(s) 143, 792
HgaI GACGC 1 cut(s) 748
HhaI GCGC 1 cut(s) 665
Hin1I GRCGYC 1 cut(s) 740
Hin1II CATG 4 cut(s) 244, 553, 651, 917
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HinfI GANTC 6 cut(s) 132, 468, 772, 858, 1113, 1141
HpaII CCGG 2 cut(s) 143, 792
HphI GGTGA 3 cut(s) 95, 132, 354
Hpy166II GTNNAC 2 cut(s) 86, 140
Hpy188I TCNGA 3 cut(s) 857, 1099, 1162
Hpy188III TCNNGA 6 cut(s) 241, 550, 876, 934, 1110, 1145
Hpy8I GTNNAC 2 cut(s) 86, 140
Hpy99I CGWCG 1 cut(s) 742
HpyAV CCTTC 4 cut(s) 362, 378, 510, 547
HpyCH4III ACNGT 7 cut(s) 74, 196, 461, 571, 601, 615, 930
HpyCH4V TGCA 3 cut(s) 515, 694, 905
HpyF10VI GCNNNNNNNGC 6 cut(s) 488, 638, 893, 902, 919, 1013
HpyF3I CTNAG 2 cut(s) 15, 883
Hsp92I GRCGYC 1 cut(s) 740
Hsp92II CATG 4 cut(s) 244, 553, 651, 917
HspAI GCGC 1 cut(s) 663
Kzo9I GATC 4 cut(s) 54, 651, 784, 1120
LguI GCTCTTC 2 cut(s) 336, 855
LmnI GCTCC 5 cut(s) 354, 813, 878, 893, 1163
LpnPI CCDG 9 cut(s) 66, 156, 294, 369, 414, 488, 694, 805, 861
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 2 cut(s) 67, 125
MaeI CTAG 4 cut(s) 434, 890, 923, 1171
MaeIII GTNAC 4 cut(s) 3, 417, 493, 601
MalI GATC 4 cut(s) 56, 653, 786, 1122
MbiI CCGCTC 1 cut(s) 394
MboI GATC 4 cut(s) 54, 651, 784, 1120
MfeI CAATTG 1 cut(s) 808
MflI RGATCY 2 cut(s) 54, 784
MhlI GDGCHC 1 cut(s) 799
MluCI AATT 4 cut(s) 211, 486, 808, 906
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 7 cut(s) 68, 83, 97, 299, 956, 959, 1049
MseI TTAA 6 cut(s) 258, 450, 818, 1047, 1068, 1125
MslI CAYNNNNRTG 3 cut(s) 413, 554, 646
MspCI CTTAAG 2 cut(s) 449, 1124
MspI CCGG 2 cut(s) 143, 792
MspR9I CCNGG 1 cut(s) 792
MunI CAATTG 1 cut(s) 808
Mva1269I GAATGC 1 cut(s) 641
MwoI GCNNNNNNNGC 6 cut(s) 488, 638, 893, 902, 919, 1013
NciI CCSGG 1 cut(s) 792
NdeII GATC 4 cut(s) 54, 651, 784, 1120
NlaIII CATG 4 cut(s) 244, 553, 651, 917
NlaIV GGNNCC 3 cut(s) 786, 880, 1159
NmuCI GTSAC 1 cut(s) 417
NspI RCATGY 1 cut(s) 917
PagI TCATGA 2 cut(s) 240, 549
PciSI GCTCTTC 2 cut(s) 336, 855
PcsI WCGNNNNNNNCGW 2 cut(s) 380, 773
PctI GAATGC 1 cut(s) 641
PfeI GAWTC 6 cut(s) 132, 468, 772, 858, 1113, 1141
PkrI GCNGC 1 cut(s) 696
PshAI GACNNNNGTC 1 cut(s) 941
PspN4I GGNNCC 3 cut(s) 786, 880, 1159
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 2 cut(s) 54, 784
RseI CAYNNNNRTG 3 cut(s) 413, 554, 646
SapI GCTCTTC 2 cut(s) 336, 855
SaqAI TTAA 6 cut(s) 258, 450, 818, 1047, 1068, 1125
SatI GCNGC 1 cut(s) 695
Sau3AI GATC 4 cut(s) 54, 651, 784, 1120
Sau96I GGNCC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 792
SduI GDGCHC 1 cut(s) 799
SfaNI GCATC 2 cut(s) 67, 125
SfcI CTRYAG 1 cut(s) 426
SmiMI CAYNNNNRTG 3 cut(s) 413, 554, 646
SmlI CTYRAG 3 cut(s) 109, 449, 1124
SmoI CTYRAG 3 cut(s) 109, 449, 1124
Sse9I AATT 4 cut(s) 211, 486, 808, 906
SsiI CCGC 5 cut(s) 365, 392, 590, 788, 1002
SspMI CTAG 4 cut(s) 434, 890, 923, 1171
StyD4I CCNGG 1 cut(s) 790
StyI CCWWGG 1 cut(s) 952
TaaI ACNGT 7 cut(s) 74, 196, 461, 571, 601, 615, 930
TaqI TCGA 3 cut(s) 37, 767, 977
TasI AATT 4 cut(s) 211, 486, 808, 906
TfiI GAWTC 6 cut(s) 132, 468, 772, 858, 1113, 1141
Tru1I TTAA 6 cut(s) 258, 450, 818, 1047, 1068, 1125
Tru9I TTAA 6 cut(s) 258, 450, 818, 1047, 1068, 1125
TscAI CASTG 4 cut(s) 79, 288, 466, 1123
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 1 cut(s) 694
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 6 cut(s) 229, 257, 286, 538, 566, 979
TspGWI ACGGA 2 cut(s) 125, 765
TspRI CASTG 4 cut(s) 79, 288, 466, 1123
Vha464I CTTAAG 2 cut(s) 449, 1124
XceI RCATGY 1 cut(s) 917
XspI CTAG 4 cut(s) 434, 890, 923, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.