FvH4_4g06880

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007221
Physical Location & Seq
Reverse (-)
6196644 .. 6203053
6410 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06880.t2

Sequence Viewer

Length: 1134 bp
ATGTTGAATTTCTTTGTGAGGAAAGATGTCAGGAAGATCCTCAAACGCAAGGATAGTGATGCTGGTGAAAGAGGAAAAGCTCTTGAAGACTTGCGGTCTTCTCTGTTCAATGTTTTCCGCTCACCTGAAGGTGCAAAGCGTCAACAGCAACAATTATGTGGCCCTGCAACTGCTCTGACATTCAATTTTGTAGTAGCTGTTGGTATAATTTTCATGAACAAATTGGTGCTCAAAGTTGTCGGGTTCCAGTTTCCTATATTTCTTACGTTTATACACTATGTTGTAAGCTGGTTATTGATGGCCATTCTGAAATCTCTGTCTATCCTCCCTGCATCTCCCTCAAAATCGGCTCGCATATCTACGTTATTTACTCTTGGCTTTGTTATGGCTCTATCTACTGGCCTTGCTAATGTTAGCTTAAAGTATAATAGTGTGGGCTTTTATCAGATGTCTAAGATTGCGGTTACGCCATCAATTGTTCTTGCAGAATTTGTACTCTACAATAAGAGAGTGTCTTTCTCCAAGGTCCTAACACTTGCAGTAGTATCTTTTGGTGTCGCAGTGGCTACTGTAACGGATCTGCAATTCCATCTCTTTGGAGCTTGTATAGCATTAGCATGGATAATACCCAGTGCAATCAACAAGATTCTATGGTCTAGCCTGCAACAGCAGGAGAATTGGACAGCCTTGGCATTAATGTGGAAGACAACGCCAGTTACTTTATTTTTTCTTGTTGCATTGATACCCTGGTTGGATCCACCTGGTGCTCTCTCCTTTAATTGGAGCTTTAATAATACCTCGGCAATTCTCATGTCAGCTATTCTCGGCTTCTTACTTCAGTGGTCTGGTGCCCTAGCTCTTGGGGCTACATCTGCTGTTACACATGTTGTTCTTGGTCAATTTAAAACATGTGTCATTCTGCTTGGAAACTACTACCTCTTTAGTTCCAATCCAGGCAAGACCAGTATTTGTGGGGCCTTCACAGCAATCGCTGGAATGTCTATATACACTTACCTAAACTTGAGGCAGCAATCAAGCAGAACATCCCCACGACAAGCCTCAACATTACCAAAATCTAAACTGAGTAAAGAAAATGGCAACCATGATGGAAATTATGGGGCTGAATCTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

378

Amino Acids

41.31

Weight (kDa)

9.96

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 60 - 252 4.5e-13 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 848
AccBSI CCGCTC 1 cut(s) 120
AciI CCGC 3 cut(s) 94, 118, 461
AclWI GGATC 4 cut(s) 31, 585, 749, 762
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 7, 488
AcuI CTGAAG 2 cut(s) 147, 821
AdeI CACNNNGTG 1 cut(s) 764
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 1 cut(s) 780
AflIII ACRYGT 2 cut(s) 883, 908
AgsI TTSAA 4 cut(s) 7, 86, 109, 184
AhdI GACNNNNNGTC 1 cut(s) 94
AjnI CCWGG 3 cut(s) 746, 760, 952
AluBI AGCT 8 cut(s) 80, 197, 288, 417, 602, 786, 818, 857
AluI AGCT 8 cut(s) 80, 197, 288, 417, 602, 786, 818, 857
Alw21I GWGCWC 2 cut(s) 231, 769
AlwI GGATC 4 cut(s) 31, 585, 749, 762
AoxI GGCC 4 cut(s) 160, 300, 400, 975
ApeKI GCWGC 1 cut(s) 1027
ApoI RAATTY 2 cut(s) 7, 488
AseI ATTAAT 1 cut(s) 695
AspS9I GGNCC 3 cut(s) 161, 526, 975
AsuHPI GGTGA 2 cut(s) 77, 114
AvaII GGWCC 1 cut(s) 526
BaeGI GKGCMC 1 cut(s) 853
BaeI ACNNNNGTAYC 2 cut(s) 734, 767
BalI TGGCCA 1 cut(s) 302
BamHI GGATCC 1 cut(s) 754
BanI GGYRCC 1 cut(s) 848
BbsI GAAGAC 3 cut(s) 90, 93, 710
Bbv12I GWGCWC 2 cut(s) 231, 769
BbvI GCAGC 1 cut(s) 1039
BccI CCATC 4 cut(s) 292, 478, 597, 1100
BciT130I CCWGG 3 cut(s) 748, 762, 954
BfaI CTAG 2 cut(s) 657, 854
BisI GCNGC 1 cut(s) 1028
BlsI GCNGC 1 cut(s) 1029
Bme1390I CCNGG 3 cut(s) 748, 762, 954
Bme18I GGWCC 1 cut(s) 526
BmeRI GACNNNNNGTC 1 cut(s) 94
BmgT120I GGNCC 3 cut(s) 161, 526, 975
BmiI GGNNCC 4 cut(s) 245, 756, 850, 976
BmrFI CCNGG 3 cut(s) 748, 762, 954
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 2 cut(s) 49, 341
BmuI ACTGGG 1 cut(s) 624
BpiI GAAGAC 3 cut(s) 90, 93, 710
BpuEI CTTGAG 1 cut(s) 1042
BsaJI CCNNGG 4 cut(s) 522, 687, 746, 798
Bsc4I CCNNNNNNNGG 1 cut(s) 780
Bse1I ACTGG 5 cut(s) 247, 403, 630, 713, 963
BseBI CCWGG 3 cut(s) 748, 762, 954
BseDI CCNNGG 4 cut(s) 522, 687, 746, 798
BseGI GGATG 1 cut(s) 1043
BseLI CCNNNNNNNGG 1 cut(s) 780
BseMII CTCAG 1 cut(s) 1073
BseNI ACTGG 5 cut(s) 247, 403, 630, 713, 963
BseSI GKGCMC 1 cut(s) 853
BseXI GCAGC 1 cut(s) 1039
BshFI GGCC 4 cut(s) 162, 302, 402, 977
BshNI GGYRCC 1 cut(s) 848
BsiHKAI GWGCWC 2 cut(s) 231, 769
BslI CCNNNNNNNGG 1 cut(s) 780
BsnI GGCC 4 cut(s) 162, 302, 402, 977
Bsp1286I GDGCHC 3 cut(s) 231, 769, 853
Bsp143I GATC 3 cut(s) 36, 577, 754
BspACI CCGC 3 cut(s) 94, 118, 461
BspANI GGCC 4 cut(s) 162, 302, 402, 977
BspCNI CTCAG 1 cut(s) 1074
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 4 cut(s) 245, 756, 850, 976
BspPI GGATC 4 cut(s) 31, 585, 749, 762
BspT107I GGYRCC 1 cut(s) 848
BsrBI CCGCTC 1 cut(s) 120
BsrI ACTGG 5 cut(s) 247, 403, 630, 713, 963
BssECI CCNNGG 4 cut(s) 522, 687, 746, 798
BssMI GATC 3 cut(s) 36, 577, 754
BssT1I CCWWGG 2 cut(s) 522, 687
Bst2UI CCWGG 3 cut(s) 748, 762, 954
Bst4CI ACNGT 1 cut(s) 571
BstC8I GCNNGC 2 cut(s) 352, 662
BstDEI CTNAG 2 cut(s) 453, 1082
BstF5I GGATG 1 cut(s) 1043
BstKTI GATC 3 cut(s) 39, 580, 757
BstMBI GATC 3 cut(s) 36, 577, 754
BstMWI GCNNNNNNNGC 5 cut(s) 145, 608, 863, 872, 983
BstNI CCWGG 3 cut(s) 748, 762, 954
BstNSI RCATGY 2 cut(s) 887, 912
BstSCI CCNGG 3 cut(s) 746, 760, 952
BstSLI GKGCMC 1 cut(s) 853
BstV1I GCAGC 1 cut(s) 1039
BstV2I GAAGAC 3 cut(s) 90, 93, 710
BstX2I RGATCY 3 cut(s) 36, 577, 754
BstXI CCANNNNNNTGG 1 cut(s) 596
BstYI RGATCY 3 cut(s) 36, 577, 754
BsuRI GGCC 4 cut(s) 162, 302, 402, 977
BtsCI GGATG 1 cut(s) 1043
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 3 cut(s) 567, 637, 845
Cac8I GCNNGC 2 cut(s) 352, 662
CciI TCATGA 1 cut(s) 213
Cfr13I GGNCC 3 cut(s) 161, 526, 975
CseI GACGC 1 cut(s) 128
CsiI ACCWGGT 1 cut(s) 760
Csp6I GTAC 1 cut(s) 494
CviAII CATG 6 cut(s) 214, 618, 811, 884, 909, 1103
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 2 cut(s) 453, 1082
DpnI GATC 3 cut(s) 38, 579, 756
DpnII GATC 3 cut(s) 36, 577, 754
DraI TTTAAA 1 cut(s) 904
DraIII CACNNNGTG 1 cut(s) 764
DriI GACNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 300
Eam1105I GACNNNNNGTC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 522, 687
Eco47I GGWCC 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 147, 821
EcoO109I RGGNCCY 2 cut(s) 526, 975
EcoRII CCWGG 3 cut(s) 746, 760, 952
EcoT14I CCWWGG 2 cut(s) 522, 687
ErhI CCWWGG 2 cut(s) 522, 687
FaeI CATG 6 cut(s) 217, 621, 814, 887, 912, 1106
FatI CATG 6 cut(s) 213, 617, 810, 883, 908, 1102
Fnu4HI GCNGC 1 cut(s) 1028
FokI GGATG 1 cut(s) 1030
Fsp4HI GCNGC 1 cut(s) 1028
FspBI CTAG 2 cut(s) 657, 854
GluI GCNGC 1 cut(s) 1028
HaeIII GGCC 4 cut(s) 162, 302, 402, 977
HgaI GACGC 1 cut(s) 128
Hin1II CATG 6 cut(s) 217, 621, 814, 887, 912, 1106
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HinfI GANTC 2 cut(s) 646, 1124
HphI GGTGA 2 cut(s) 77, 114
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 3 cut(s) 177, 309, 447
Hpy188III TCNNGA 3 cut(s) 31, 83, 214
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 122, 988
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4IV ACGT 2 cut(s) 266, 362
HpyCH4V TGCA 9 cut(s) 134, 167, 332, 485, 539, 583, 635, 664, 737
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 608, 863, 872, 983
HpyF3I CTNAG 2 cut(s) 453, 1082
HpySE526I ACGT 2 cut(s) 266, 362
Hsp92II CATG 6 cut(s) 217, 621, 814, 887, 912, 1106
Kzo9I GATC 3 cut(s) 36, 577, 754
LmnI GCTCC 2 cut(s) 599, 783
Lsp1109I GCAGC 1 cut(s) 1039
LweI GCATC 2 cut(s) 49, 341
MabI ACCWGGT 1 cut(s) 760
MaeI CTAG 2 cut(s) 657, 854
MaeII ACGT 2 cut(s) 266, 362
MaeIII GTNAC 4 cut(s) 463, 571, 715, 877
MalI GATC 3 cut(s) 38, 579, 756
MbiI CCGCTC 1 cut(s) 120
MboI GATC 3 cut(s) 36, 577, 754
MboII GAAGA 4 cut(s) 46, 90, 98, 715
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 3 cut(s) 36, 577, 754
MhlI GDGCHC 3 cut(s) 231, 769, 853
MlsI TGGCCA 1 cut(s) 302
MluNI TGGCCA 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 732
MnlI CCTC 9 cut(s) 12, 50, 65, 335, 349, 808, 947, 1017, 1069
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
MseI TTAA 5 cut(s) 419, 695, 777, 789, 903
MslI CAYNNNNRTG 2 cut(s) 616, 697
Msp20I TGGCCA 1 cut(s) 302
MspR9I CCNGG 3 cut(s) 748, 762, 954
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 3 cut(s) 748, 762, 954
MwoI GCNNNNNNNGC 5 cut(s) 145, 608, 863, 872, 983
NdeII GATC 3 cut(s) 36, 577, 754
NlaIII CATG 6 cut(s) 217, 621, 814, 887, 912, 1106
NlaIV GGNNCC 4 cut(s) 245, 756, 850, 976
NmeAIII GCCGAG 2 cut(s) 779, 804
NspI RCATGY 2 cut(s) 887, 912
PagI TCATGA 1 cut(s) 213
PciI ACATGT 2 cut(s) 883, 908
PfeI GAWTC 2 cut(s) 646, 1124
PkrI GCNGC 1 cut(s) 1029
PpuMI RGGWCCY 1 cut(s) 526
PscI ACATGT 2 cut(s) 883, 908
PshBI ATTAAT 1 cut(s) 695
Psp5II RGGWCCY 1 cut(s) 526
Psp6I CCWGG 3 cut(s) 746, 760, 952
PspGI CCWGG 3 cut(s) 746, 760, 952
PspN4I GGNNCC 4 cut(s) 245, 756, 850, 976
PspPI GGNCC 3 cut(s) 161, 526, 975
PspPPI RGGWCCY 1 cut(s) 526
PsuI RGATCY 3 cut(s) 36, 577, 754
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 2 cut(s) 616, 697
SaqAI TTAA 5 cut(s) 419, 695, 777, 789, 903
SatI GCNGC 1 cut(s) 1028
Sau3AI GATC 3 cut(s) 36, 577, 754
Sau96I GGNCC 3 cut(s) 161, 526, 975
ScrFI CCNGG 3 cut(s) 748, 762, 954
SduI GDGCHC 3 cut(s) 231, 769, 853
SexAI ACCWGGT 1 cut(s) 760
SfaNI GCATC 2 cut(s) 49, 341
SinI GGWCC 1 cut(s) 526
SmiMI CAYNNNNRTG 2 cut(s) 616, 697
SmlI CTYRAG 1 cut(s) 1021
SmoI CTYRAG 1 cut(s) 1021
SsiI CCGC 3 cut(s) 94, 118, 461
SspMI CTAG 2 cut(s) 657, 854
StyD4I CCNGG 3 cut(s) 746, 760, 952
StyI CCWWGG 2 cut(s) 522, 687
TaaI ACNGT 1 cut(s) 571
TaiI ACGT 2 cut(s) 269, 365
TatI WGTACW 1 cut(s) 493
TfiI GAWTC 2 cut(s) 646, 1124
Tru1I TTAA 5 cut(s) 419, 695, 777, 789, 903
Tru9I TTAA 5 cut(s) 419, 695, 777, 789, 903
TscAI CASTG 3 cut(s) 567, 637, 845
TseI GCWGC 1 cut(s) 1027
TspDTI ATGAA 2 cut(s) 202, 230
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 3 cut(s) 567, 637, 845
VpaK11BI GGWCC 1 cut(s) 526
VspI ATTAAT 1 cut(s) 695
XapI RAATTY 2 cut(s) 7, 488
XceI RCATGY 2 cut(s) 887, 912
XspI CTAG 2 cut(s) 657, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.