Rh4DG081200

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007221
Physical Location & Seq
Reverse (-)
12118987 .. 12126492
7506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG081200.1

Sequence Viewer

Length: 1329 bp
ATGCTCTCTTTCCCCATTTCCCCTTCATATCCTCGTCATCTCATCTCAACTCAAACTCACAACTACTACTTGCTGCTCCACTCTCACTCTAATAACGCCGTTCGAGAGAGACCCAGAACCCGAAAACTACATCTTTTTAATCACAGACAGTGTTGGAGATCGAAAGGTTTATGCTTTTGCAACCCCAACCCAAAAATGTTAAATTTCTTAGGGAGGAAAGATGTTAGGAAGATTCTCAAACGCAAGGATAGTGATGCTGGTGAAAGAGGAAAAGCTCTCGAAGACTTGCGGTCTTCTCTATTCAATGTGTTTCGCTCACCTGAAGGTGCAAAGCGTCAACAGCAACAACTATGTGGCCCTGCAACTGCTCTTACATTCAATTTTATAGTTGCTGTTGGTATAATTTTCATGAACAAATTGGTGCTCAAAGTTGTTGGGTTCCAGTTTCCTATATTTCTCACTTTTATCCACTACGTTGTAAGCTGGTTGTTGATGGCCATTCTGAAATCTCTGTCTATCCTCCCTGCATCTCCCTCAAAATCGGCTCGCTTATCTACGTTATTTACTCTTGGCTTTGTTATGGCTCTATCCACCGGCCTTGCTAATGTTAGCTTAAAGTACAATAGTGTGGGTTTTTATCAGATGTCTAAGATTGCGGTTACCCCATCCATTGTTCTCGCAGAATTTTTACTCTACAATAAGAGAGTGTCTTTTTCCAAGGTCCTAACACTTGCAGTAGTATCTTTTGGTGTTGCTGTGGCTACTGTAACGGATCTGCAATTCCATCTCTTTGGTGCTTGTATAGCATTAGCATGGATAATACCTAGTGCAATTAACAAGATTCTTTGGTCTAGTCTGCAACAGCAGGAGAACTGGACAGCGTTGGCGTTAATGTGGAAGACAACACCAGTTACTTTATTTTTTCTGGTCGCACTGATACCCTGGTTGGATCCACCTGGTGCTCTCTCCTTTAATTGGAGTTTTAATAACACCTCGGCAATTCTCATGTCAGCTATTCTCGGCTTCTTACTTCAGTGGTCTGGTGCTCTAGCTCTTGGGGCTACATCTGCTGTTACACATGTTGTTCTTGGTCAATTCAAAACATGTGTCATTCTTCTTGGAAACTACTACCTGTTTAGTTCCAATCCAGGCAAGACCAGTATTTGTGGGGCCTTCACAGCAATTGCCGGAATGTCCATTTACACTTACCTAAATTTGAGGCAGCAATCAAGCAGAACATCCCCACGACAAGTCTCTACATTACCAAAATCTAAACTGAGTAAAGAAAATGGCAACCATGATGGAAATTACGGGGCCGAATCTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

442

Amino Acids

49.08

Weight (kDa)

10.11

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 126 - 401 1.2e-15 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 289, 656
AclWI GGATC 3 cut(s) 780, 944, 957
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 3 cut(s) 202, 683, 1213
AcuI CTGAAG 2 cut(s) 342, 1016
AdeI CACNNNGTG 1 cut(s) 959
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 1 cut(s) 975
AflIII ACRYGT 2 cut(s) 1078, 1103
AgsI TTSAA 3 cut(s) 304, 379, 1099
AhdI GACNNNNNGTC 1 cut(s) 289
AjnI CCWGG 3 cut(s) 941, 955, 1147
AluBI AGCT 5 cut(s) 275, 483, 612, 1013, 1052
AluI AGCT 5 cut(s) 275, 483, 612, 1013, 1052
Alw21I GWGCWC 3 cut(s) 426, 964, 1048
Alw26I GTCTC 2 cut(s) 103, 1258
AlwI GGATC 3 cut(s) 780, 944, 957
AoxI GGCC 5 cut(s) 355, 495, 595, 1170, 1314
ApeKI GCWGC 2 cut(s) 73, 1222
ApoI RAATTY 3 cut(s) 202, 683, 1213
ArsI GACNNNNNNTTYG 2 cut(s) 1092, 1124
AspS9I GGNCC 4 cut(s) 356, 721, 1170, 1314
AsuHPI GGTGA 2 cut(s) 272, 309
AvaII GGWCC 1 cut(s) 721
BaeI ACNNNNGTAYC 2 cut(s) 929, 962
BalI TGGCCA 1 cut(s) 497
BamHI GGATCC 1 cut(s) 949
BbsI GAAGAC 3 cut(s) 285, 288, 905
Bbv12I GWGCWC 3 cut(s) 426, 964, 1048
BbvI GCAGC 2 cut(s) 60, 1234
BccI CCATC 4 cut(s) 487, 673, 792, 1295
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 3 cut(s) 943, 957, 1149
BcoDI GTCTC 2 cut(s) 103, 1258
BfaI CTAG 3 cut(s) 825, 852, 1049
BisI GCNGC 2 cut(s) 74, 1223
BlsI GCNGC 2 cut(s) 75, 1224
Bme1390I CCNGG 3 cut(s) 943, 957, 1149
Bme18I GGWCC 1 cut(s) 721
BmeRI GACNNNNNGTC 1 cut(s) 289
BmgT120I GGNCC 4 cut(s) 356, 721, 1170, 1314
BmiI GGNNCC 4 cut(s) 440, 951, 1171, 1315
BmrFI CCNGG 3 cut(s) 943, 957, 1149
BmsI GCATC 2 cut(s) 244, 536
BpiI GAAGAC 3 cut(s) 285, 288, 905
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 717, 941, 993
Bsc4I CCNNNNNNNGG 1 cut(s) 975
Bse118I RCCGGY 1 cut(s) 593
Bse1I ACTGG 4 cut(s) 442, 878, 908, 1158
BseBI CCWGG 3 cut(s) 943, 957, 1149
BseDI CCNNGG 3 cut(s) 717, 941, 993
BseGI GGATG 2 cut(s) 665, 1238
BseLI CCNNNNNNNGG 1 cut(s) 975
BseMII CTCAG 1 cut(s) 1268
BseNI ACTGG 4 cut(s) 442, 878, 908, 1158
BseXI GCAGC 2 cut(s) 60, 1234
BshFI GGCC 5 cut(s) 357, 497, 597, 1172, 1316
BsiHKAI GWGCWC 3 cut(s) 426, 964, 1048
BsiSI CCGG 2 cut(s) 594, 1188
BslI CCNNNNNNNGG 1 cut(s) 975
BsmAI GTCTC 2 cut(s) 103, 1258
BsnI GGCC 5 cut(s) 357, 497, 597, 1172, 1316
Bso31I GGTCTC 1 cut(s) 103
Bsp1286I GDGCHC 3 cut(s) 426, 964, 1048
Bsp143I GATC 3 cut(s) 158, 772, 949
BspACI CCGC 2 cut(s) 289, 656
BspANI GGCC 5 cut(s) 357, 497, 597, 1172, 1316
BspCNI CTCAG 1 cut(s) 1269
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 4 cut(s) 440, 951, 1171, 1315
BspPI GGATC 3 cut(s) 780, 944, 957
BspTNI GGTCTC 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 593
BsrI ACTGG 4 cut(s) 442, 878, 908, 1158
BssAI RCCGGY 1 cut(s) 593
BssECI CCNNGG 3 cut(s) 717, 941, 993
BssMI GATC 3 cut(s) 158, 772, 949
BssT1I CCWWGG 1 cut(s) 717
Bst2UI CCWGG 3 cut(s) 943, 957, 1149
Bst4CI ACNGT 2 cut(s) 150, 766
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 3 cut(s) 208, 648, 1277
BstEII GGTNACC 1 cut(s) 658
BstF5I GGATG 2 cut(s) 665, 1238
BstKTI GATC 3 cut(s) 161, 775, 952
BstMAI GTCTC 2 cut(s) 103, 1258
BstMBI GATC 3 cut(s) 158, 772, 949
BstMWI GCNNNNNNNGC 5 cut(s) 340, 803, 1058, 1067, 1178
BstNI CCWGG 3 cut(s) 943, 957, 1149
BstNSI RCATGY 2 cut(s) 1082, 1107
BstPI GGTNACC 1 cut(s) 658
BstSCI CCNGG 3 cut(s) 941, 955, 1147
BstV1I GCAGC 2 cut(s) 60, 1234
BstV2I GAAGAC 3 cut(s) 285, 288, 905
BstX2I RGATCY 2 cut(s) 772, 949
BstXI CCANNNNNNTGG 1 cut(s) 791
BstYI RGATCY 2 cut(s) 772, 949
BsuRI GGCC 5 cut(s) 357, 497, 597, 1172, 1316
BtsCI GGATG 2 cut(s) 665, 1238
BtsIMutI CAGTG 3 cut(s) 155, 932, 1040
Cac8I GCNNGC 1 cut(s) 547
CciI TCATGA 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 593
Cfr13I GGNCC 4 cut(s) 356, 721, 1170, 1314
CseI GACGC 1 cut(s) 323
CsiI ACCWGGT 1 cut(s) 955
Csp6I GTAC 1 cut(s) 619
CspCI CAANNNNNGTGG 2 cut(s) 580, 615
CviAII CATG 6 cut(s) 409, 813, 1006, 1079, 1104, 1298
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 3 cut(s) 208, 648, 1277
DpnI GATC 3 cut(s) 160, 774, 951
DpnII GATC 3 cut(s) 158, 772, 949
DraIII CACNNNGTG 1 cut(s) 959
DriI GACNNNNNGTC 1 cut(s) 289
EaeI YGGCCR 1 cut(s) 495
Eam1105I GACNNNNNGTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 717
Eco31I GGTCTC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 721
Eco57I CTGAAG 2 cut(s) 342, 1016
Eco91I GGTNACC 1 cut(s) 658
EcoO109I RGGNCCY 2 cut(s) 721, 1170
EcoO65I GGTNACC 1 cut(s) 658
EcoRII CCWGG 3 cut(s) 941, 955, 1147
EcoT14I CCWWGG 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 717
FaeI CATG 6 cut(s) 412, 816, 1009, 1082, 1107, 1301
FatI CATG 6 cut(s) 408, 812, 1005, 1078, 1103, 1297
Fnu4HI GCNGC 2 cut(s) 74, 1223
FokI GGATG 2 cut(s) 652, 1225
Fsp4HI GCNGC 2 cut(s) 74, 1223
FspBI CTAG 3 cut(s) 825, 852, 1049
GluI GCNGC 2 cut(s) 74, 1223
HaeIII GGCC 5 cut(s) 357, 497, 597, 1172, 1316
HapII CCGG 2 cut(s) 594, 1188
HgaI GACGC 1 cut(s) 323
Hin1II CATG 6 cut(s) 412, 816, 1009, 1082, 1107, 1301
HincII GTYRAC 1 cut(s) 338
HindII GTYRAC 1 cut(s) 338
HinfI GANTC 3 cut(s) 232, 841, 1319
HpaII CCGG 2 cut(s) 594, 1188
HphI GGTGA 2 cut(s) 272, 309
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 2 cut(s) 504, 642
Hpy188III TCNNGA 3 cut(s) 104, 278, 409
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 3 cut(s) 33, 317, 1183
HpyCH4III ACNGT 2 cut(s) 150, 766
HpyCH4IV ACGT 2 cut(s) 474, 557
HpyCH4V TGCA 8 cut(s) 180, 329, 362, 527, 734, 778, 830, 859
HpyF10VI GCNNNNNNNGC 5 cut(s) 340, 803, 1058, 1067, 1178
HpyF3I CTNAG 3 cut(s) 208, 648, 1277
HpySE526I ACGT 2 cut(s) 474, 557
Hsp92II CATG 6 cut(s) 412, 816, 1009, 1082, 1107, 1301
Kzo9I GATC 3 cut(s) 158, 772, 949
LmnI GCTCC 1 cut(s) 81
Lsp1109I GCAGC 2 cut(s) 60, 1234
LweI GCATC 2 cut(s) 244, 536
MabI ACCWGGT 1 cut(s) 955
MaeI CTAG 3 cut(s) 825, 852, 1049
MaeII ACGT 2 cut(s) 474, 557
MaeIII GTNAC 4 cut(s) 658, 766, 910, 1072
MalI GATC 3 cut(s) 160, 774, 951
MboI GATC 3 cut(s) 158, 772, 949
MboII GAAGA 5 cut(s) 241, 285, 293, 910, 1106
MfeI CAATTG 1 cut(s) 1182
MflI RGATCY 2 cut(s) 772, 949
MhlI GDGCHC 3 cut(s) 426, 964, 1048
MlsI TGGCCA 1 cut(s) 497
MluNI TGGCCA 1 cut(s) 497
MmeI TCCRAC 2 cut(s) 134, 927
MnlI CCTC 7 cut(s) 42, 207, 260, 530, 544, 1003, 1212
Mox20I TGGCCA 1 cut(s) 497
MscI TGGCCA 1 cut(s) 497
MseI TTAA 7 cut(s) 138, 200, 614, 834, 890, 972, 984
MslI CAYNNNNRTG 1 cut(s) 811
Msp20I TGGCCA 1 cut(s) 497
MspI CCGG 2 cut(s) 594, 1188
MspR9I CCNGG 3 cut(s) 943, 957, 1149
MunI CAATTG 1 cut(s) 1182
MvaI CCWGG 3 cut(s) 943, 957, 1149
MwoI GCNNNNNNNGC 5 cut(s) 340, 803, 1058, 1067, 1178
NdeII GATC 3 cut(s) 158, 772, 949
NlaIII CATG 6 cut(s) 412, 816, 1009, 1082, 1107, 1301
NlaIV GGNNCC 4 cut(s) 440, 951, 1171, 1315
NmeAIII GCCGAG 2 cut(s) 974, 999
NspI RCATGY 2 cut(s) 1082, 1107
PagI TCATGA 1 cut(s) 408
PciI ACATGT 2 cut(s) 1078, 1103
PfeI GAWTC 3 cut(s) 232, 841, 1319
PkrI GCNGC 2 cut(s) 75, 1224
PpuMI RGGWCCY 1 cut(s) 721
PscI ACATGT 2 cut(s) 1078, 1103
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 3 cut(s) 941, 955, 1147
PspEI GGTNACC 1 cut(s) 658
PspGI CCWGG 3 cut(s) 941, 955, 1147
PspN4I GGNNCC 4 cut(s) 440, 951, 1171, 1315
PspPI GGNCC 4 cut(s) 356, 721, 1170, 1314
PspPPI RGGWCCY 1 cut(s) 721
PsuI RGATCY 2 cut(s) 772, 949
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 811
SaqAI TTAA 7 cut(s) 138, 200, 614, 834, 890, 972, 984
SatI GCNGC 2 cut(s) 74, 1223
Sau3AI GATC 3 cut(s) 158, 772, 949
Sau96I GGNCC 4 cut(s) 356, 721, 1170, 1314
ScrFI CCNGG 3 cut(s) 943, 957, 1149
SduI GDGCHC 3 cut(s) 426, 964, 1048
SexAI ACCWGGT 1 cut(s) 955
SfaNI GCATC 2 cut(s) 244, 536
SinI GGWCC 1 cut(s) 721
SmiMI CAYNNNNRTG 1 cut(s) 811
SsiI CCGC 2 cut(s) 289, 656
SspMI CTAG 3 cut(s) 825, 852, 1049
StyD4I CCNGG 3 cut(s) 941, 955, 1147
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 2 cut(s) 150, 766
TaiI ACGT 2 cut(s) 477, 560
TaqI TCGA 3 cut(s) 103, 161, 279
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 3 cut(s) 232, 841, 1319
Tru1I TTAA 7 cut(s) 138, 200, 614, 834, 890, 972, 984
Tru9I TTAA 7 cut(s) 138, 200, 614, 834, 890, 972, 984
TscAI CASTG 3 cut(s) 155, 939, 1040
TseI GCWGC 2 cut(s) 73, 1222
TspDTI ATGAA 3 cut(s) 15, 397, 425
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 3 cut(s) 155, 939, 1040
VpaK11BI GGWCC 1 cut(s) 721
XapI RAATTY 3 cut(s) 202, 683, 1213
XceI RCATGY 2 cut(s) 1082, 1107
XspI CTAG 3 cut(s) 825, 852, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.