pycom16g20600

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0007221
Physical Location & Seq
Reverse (-)
18380823 .. 18385451
4629 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g20600.1

Sequence Viewer

Length: 1134 bp
ATGTTAAATTTCTTTGTAAGGAAAGGCGTTAGGAAGATTCTCAAGCGCAAGGATAGTGATGCTGGTGAAAGAGGAAGAGCTATAGAAGACTTGCGATCTGCTCTTTTTAATGAATTCCGCTCATCCGATGGTGCAAAGCGTCAGCAACAGCTATTTGGCCCTGCCACTGCTCTTACCTTCAATTTTGTAATTGCTGTTGGCATAATTTTCGTGAACAAATTGGTGCTCAAAGTTGTTGAGTTCCAGTTTCCTATATTTCTCACCCTTATCCACTATGTAGTAAGCTGGTTATTAATGGCCATTCTAAATGCTCTTTCTATCCTCCCTGCATGTCCCTCAAAATCGACCCGCTTATCTACATTATTTACTCTTGGCTTTGTTATGGCTTTCTCTACTGGCCTTGCAAATGTTAGCTTGAAGTATAATAGTGTGGGGTTTTATCAGATGTCTAAAATTGCGGTTACGCCATCAATTGTTCTCGCAGAATTTTTGTTGTACAATAAGAGAGTTTCTTTCTCGAAGGTTCTCGCACTTACAGTAGTATCAATTGGTGTTGCCGTCGCTACAGTAACTGATATGCAATTTCATCTCTTTGGTGCTTGTATAGCATTAGCATGGATAATACCAAGTGCAGTCAACAAAATTCTTTGGTCTAGCTTGCAACAGCAGGAAAATTGGACAGCCTTAGCATTAATGTGGAAGACAACGCCAATCACTCTATTTTTCCTTGTCGCACTAATCCCTTGGTTAGATCGACCTGGTGCCCTATCTTTCAATTGGAACTTCAACAACACCTTGGCAATTCTCATGTCAGCTATTCTTGGCTTCTTGCTTCAGTGGTCAGGCGCTCTAGCACTTGGGGCAACATCTGCTGTCACACATGTCGTTCTTGGTCAATTTAAAACATGCGTCATTCTTCTAGGAAACTATTACCTCTTTAGTTCCAATCCAGGCAAGACAAGCATTTCTGGGGCTTTCACAGCCATTGCCGGAATGTCCATTTACACTTATCTTAATTTGAAGCTGCAATCAAACAAAACTTCCCCTCGGCAGGCGTCTTCTTTACCAAAATCTAAACTGAGTAAAGAAAACAGCAAGACTCACGATGGAAATTATGGTTCGGAATCTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

378

Amino Acids

41.46

Weight (kDa)

9.98

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 59 - 335 8.8e-16 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 761
AccBSI CCGCTC 1 cut(s) 120
AciI CCGC 3 cut(s) 118, 349, 458
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 4 cut(s) 7, 113, 485, 642
AcuI CTGAAG 1 cut(s) 818
AcyI GRCGYC 1 cut(s) 1055
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 1 cut(s) 1051
AflIII ACRYGT 1 cut(s) 880
AgsI TTSAA 5 cut(s) 181, 418, 775, 787, 1021
AjnI CCWGG 2 cut(s) 757, 949
AluBI AGCT 7 cut(s) 80, 151, 285, 414, 657, 815, 1024
AluI AGCT 7 cut(s) 80, 151, 285, 414, 657, 815, 1024
Alw21I GWGCWC 1 cut(s) 228
AlwNI CAGNNNCTG 1 cut(s) 572
AoxI GGCC 3 cut(s) 157, 297, 397
ApeKI GCWGC 1 cut(s) 1024
ApoI RAATTY 4 cut(s) 7, 113, 485, 642
AseI ATTAAT 2 cut(s) 293, 692
AspLEI GCGC 2 cut(s) 48, 848
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 77, 253
BaeGI GKGCMC 1 cut(s) 766
BaeI ACNNNNGTAYC 2 cut(s) 525, 558
BalI TGGCCA 1 cut(s) 299
BanI GGYRCC 1 cut(s) 761
BbsI GAAGAC 3 cut(s) 93, 707, 1050
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 1011
BccI CCATC 3 cut(s) 122, 475, 1100
BceAI ACGGC 1 cut(s) 542
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 2 cut(s) 759, 951
BfaI CTAG 3 cut(s) 654, 851, 920
BfmI CTRYAG 2 cut(s) 81, 564
BfoI RGCGCY 1 cut(s) 849
BisI GCNGC 1 cut(s) 1025
BlsI GCNGC 1 cut(s) 1026
Bme1390I CCNGG 2 cut(s) 759, 951
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 763
BmrFI CCNGG 2 cut(s) 759, 951
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 3 cut(s) 93, 707, 1050
Bpu10I CCTNAGC 1 cut(s) 685
BpuEI CTTGAG 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 1055
BsaJI CCNNGG 3 cut(s) 743, 795, 1046
Bsc4I CCNNNNNNNGG 1 cut(s) 1051
Bse1I ACTGG 2 cut(s) 244, 400
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 2 cut(s) 759, 951
BseDI CCNNGG 3 cut(s) 743, 795, 1046
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 1051
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 1 cut(s) 1070
BseNI ACTGG 2 cut(s) 244, 400
BseSI GKGCMC 1 cut(s) 766
BseXI GCAGC 1 cut(s) 1011
BsgI GTGCAG 1 cut(s) 651
BshFI GGCC 3 cut(s) 159, 299, 399
BshNI GGYRCC 1 cut(s) 761
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 990
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 1051
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 3 cut(s) 159, 299, 399
Bsp1286I GDGCHC 2 cut(s) 228, 766
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 2 cut(s) 95, 751
BspACI CCGC 3 cut(s) 118, 349, 458
BspANI GGCC 3 cut(s) 159, 299, 399
BspCNI CTCAG 1 cut(s) 1071
BspLI GGNNCC 1 cut(s) 763
BspQI GCTCTTC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 761
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 984
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 2 cut(s) 244, 400
BssECI CCNNGG 3 cut(s) 743, 795, 1046
BssMI GATC 2 cut(s) 95, 751
BssNI GRCGYC 1 cut(s) 1055
BssT1I CCWWGG 2 cut(s) 743, 795
Bst2UI CCWGG 2 cut(s) 759, 951
Bst4CI ACNGT 2 cut(s) 538, 568
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 1055
BstAPI GCANNNNNTGC 1 cut(s) 869
BstAUI TGTACA 1 cut(s) 495
BstC8I GCNNGC 2 cut(s) 659, 1053
BstDEI CTNAG 2 cut(s) 685, 1079
BstF5I GGATG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 849
BstHHI GCGC 2 cut(s) 48, 848
BstKTI GATC 2 cut(s) 98, 754
BstMBI GATC 2 cut(s) 95, 751
BstMWI GCNNNNNNNGC 5 cut(s) 605, 860, 869, 960, 980
BstNI CCWGG 2 cut(s) 759, 951
BstNSI RCATGY 3 cut(s) 333, 884, 909
BstSCI CCNGG 2 cut(s) 757, 949
BstSFI CTRYAG 2 cut(s) 81, 564
BstSLI GKGCMC 1 cut(s) 766
BstV1I GCAGC 1 cut(s) 1011
BstV2I GAAGAC 3 cut(s) 93, 707, 1050
BsuRI GGCC 3 cut(s) 159, 299, 399
BtsCI GGATG 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 165, 842
Cac8I GCNNGC 2 cut(s) 659, 1053
CaiI CAGNNNCTG 1 cut(s) 572
CfoI GCGC 2 cut(s) 48, 848
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 3 cut(s) 128, 898, 1044
CsiI ACCWGGT 1 cut(s) 757
Csp6I GTAC 1 cut(s) 496
CviAII CATG 5 cut(s) 330, 615, 808, 881, 906
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 2 cut(s) 685, 1079
DpnI GATC 2 cut(s) 97, 753
DpnII GATC 2 cut(s) 95, 751
DraI TTTAAA 1 cut(s) 901
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 743, 795
Eco57I CTGAAG 1 cut(s) 818
EcoRI GAATTC 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 757, 949
EcoT14I CCWWGG 2 cut(s) 743, 795
ErhI CCWWGG 2 cut(s) 743, 795
FaeI CATG 5 cut(s) 333, 618, 811, 884, 909
FaqI GGGAC 1 cut(s) 318
FatI CATG 5 cut(s) 329, 614, 807, 880, 905
FauI CCCGC 1 cut(s) 356
Fnu4HI GCNGC 1 cut(s) 1025
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 1025
FspBI CTAG 3 cut(s) 654, 851, 920
GlaI GCGC 2 cut(s) 47, 847
GluI GCNGC 1 cut(s) 1025
HaeII RGCGCY 1 cut(s) 849
HaeIII GGCC 3 cut(s) 159, 299, 399
HapII CCGG 1 cut(s) 990
HgaI GACGC 3 cut(s) 128, 898, 1044
HhaI GCGC 2 cut(s) 48, 848
Hin1I GRCGYC 1 cut(s) 1055
Hin1II CATG 5 cut(s) 333, 618, 811, 884, 909
Hin6I GCGC 2 cut(s) 46, 846
HinP1I GCGC 2 cut(s) 46, 846
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HinfI GANTC 3 cut(s) 37, 1099, 1124
HpaII CCGG 1 cut(s) 990
HphI GGTGA 2 cut(s) 77, 253
Hpy166II GTNNAC 2 cut(s) 214, 637
Hpy188I TCNGA 3 cut(s) 127, 444, 1123
Hpy188III TCNNGA 3 cut(s) 211, 517, 1103
Hpy8I GTNNAC 2 cut(s) 214, 637
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 2 cut(s) 187, 514
HpyCH4III ACNGT 2 cut(s) 538, 568
HpyCH4V TGCA 7 cut(s) 134, 329, 404, 580, 632, 661, 1027
HpyF10VI GCNNNNNNNGC 5 cut(s) 605, 860, 869, 960, 980
HpyF3I CTNAG 2 cut(s) 685, 1079
Hsp92I GRCGYC 1 cut(s) 1055
Hsp92II CATG 5 cut(s) 333, 618, 811, 884, 909
HspAI GCGC 2 cut(s) 46, 846
Kzo9I GATC 2 cut(s) 95, 751
LguI GCTCTTC 1 cut(s) 70
Lsp1109I GCAGC 1 cut(s) 1011
LweI GCATC 1 cut(s) 49
MabI ACCWGGT 1 cut(s) 757
MaeI CTAG 3 cut(s) 654, 851, 920
MaeIII GTNAC 3 cut(s) 460, 568, 874
MalI GATC 2 cut(s) 97, 753
MbiI CCGCTC 1 cut(s) 120
MboI GATC 2 cut(s) 95, 751
MboII GAAGA 6 cut(s) 46, 87, 98, 712, 908, 1050
MfeI CAATTG 3 cut(s) 471, 546, 775
MhlI GDGCHC 2 cut(s) 228, 766
MlsI TGGCCA 1 cut(s) 299
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 1 cut(s) 1093
MnlI CCTC 5 cut(s) 65, 332, 346, 944, 1056
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
MseI TTAA 6 cut(s) 5, 108, 293, 692, 900, 1014
MslI CAYNNNNRTG 2 cut(s) 613, 694
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 1 cut(s) 990
MspR9I CCNGG 2 cut(s) 759, 951
MunI CAATTG 3 cut(s) 471, 546, 775
MvaI CCWGG 2 cut(s) 759, 951
MwoI GCNNNNNNNGC 5 cut(s) 605, 860, 869, 960, 980
NdeII GATC 2 cut(s) 95, 751
NlaIII CATG 5 cut(s) 333, 618, 811, 884, 909
NlaIV GGNNCC 1 cut(s) 763
NmeAIII GCCGAG 1 cut(s) 1027
NmuCI GTSAC 1 cut(s) 874
NspI RCATGY 3 cut(s) 333, 884, 909
PciI ACATGT 1 cut(s) 880
PciSI GCTCTTC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 37, 1124
PkrI GCNGC 1 cut(s) 1026
PleI GAGTC 1 cut(s) 1093
PpsI GAGTC 1 cut(s) 1093
PscI ACATGT 1 cut(s) 880
PshBI ATTAAT 2 cut(s) 293, 692
Psp6I CCWGG 2 cut(s) 757, 949
PspGI CCWGG 2 cut(s) 757, 949
PspN4I GGNNCC 1 cut(s) 763
PspPI GGNCC 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 572
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
RseI CAYNNNNRTG 2 cut(s) 613, 694
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 6 cut(s) 5, 108, 293, 692, 900, 1014
SatI GCNGC 1 cut(s) 1025
Sau3AI GATC 2 cut(s) 95, 751
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 1093
ScrFI CCNGG 2 cut(s) 759, 951
SduI GDGCHC 2 cut(s) 228, 766
SexAI ACCWGGT 1 cut(s) 757
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 2 cut(s) 81, 564
SmiMI CAYNNNNRTG 2 cut(s) 613, 694
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SsiI CCGC 3 cut(s) 118, 349, 458
SspMI CTAG 3 cut(s) 654, 851, 920
StyD4I CCNGG 2 cut(s) 757, 949
StyI CCWWGG 2 cut(s) 743, 795
TaaI ACNGT 2 cut(s) 538, 568
TaqI TCGA 3 cut(s) 344, 518, 754
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 2 cut(s) 37, 1124
Tru1I TTAA 6 cut(s) 5, 108, 293, 692, 900, 1014
Tru9I TTAA 6 cut(s) 5, 108, 293, 692, 900, 1014
TscAI CASTG 2 cut(s) 172, 842
TseFI GTSAC 1 cut(s) 874
TseI GCWGC 1 cut(s) 1024
Tsp45I GTSAC 1 cut(s) 874
TspDTI ATGAA 2 cut(s) 126, 575
TspRI CASTG 2 cut(s) 172, 842
VspI ATTAAT 2 cut(s) 293, 692
XapI RAATTY 4 cut(s) 7, 113, 485, 642
XceI RCATGY 3 cut(s) 333, 884, 909
XspI CTAG 3 cut(s) 654, 851, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.