Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007221

Physical Location & Seq

Genomic Coordinates Reverse (-)

1945529 .. 1946615

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0011700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCATTCAGCAGTGTCCGGCGCAAGACCTCCGATGCCAGATGGGTTGTCTGCAGCAGAAAGAGCACGGAGGAGGCGGAATGCAGCCCCTTGTCGCGAGGCATATCAGAAGTACTGTCAGCAGCGATGCGAGATGAAAGAGCGAGACCCGAAAATGTTTCAAGAATGCGAAAGAAGTTGCATGGAGGATTTTGAACAACAGAAGCAAGGAGGAGGAGAACAAGGTAAGGGACTGCAAGGCGGCGGAGACATTAACGACAATGAGGGAGAGCAGTGGGAGGAGATGCGTGAGGACATGTGCGAGAAAAGTTGTCTGTTGCAATTAGGTGAGGGTGCGGATGATCAGCAACAGCAGGAAGTGTGTGAGAGAAGTTGCCAAAAGAAACTTACACTGCAATACAAGCAATGCAGGCTAAGTTGCCAGAAGCAACCAAATGGAAAATCGAAACGAAAAGTAAAGCAATGTCAGACACTGTGTAGGGTGAAAATTGAACAAGAACAACAAGAGCAACTAGAACACCAACAAGAGCAGCTAGAGCAAGAGCAACAAGCACAGGAGCAACAAGGTCAACAAGAGCAGGGTCAGCAAGGTCAGCAAGGCCAGCAGGGTCAGCAGGGCTTGGCTTCAATTTTGGACTCTGCAGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

216

Amino Acids

24.72

Weight (kDa)

5.24

Isoelectric Point (pI)

81.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57100 AT5G57100 AT5G57100 AT5G57100
fragaria_vesca	FvH4_4g06880 FvH4_4g06880
malus_domestica	MD13G1241400.v1.1 MD16G1244800.v1.1
prunus_persica	Prupe.1G071900_v2.0.a1 Prupe.1G071900_v2.0.a1
pyrus_communis	pycom13g21170 pycom16g20600
rosa_chinensis	RchiOBHm_Chr4g0398791
rosa_laevigata	RLG00000009322
rosa_multiflora	Rmu_sc0000458.1_g000010
rosa_roxburghii	Rroxscaffold_5G00343720
rosa_rugosa	Rorug04G0011500 Rorug04G0011600 Rorug04G0011700 Rorug04G0011800
rosa_samantha	Rh4AG089400 Rh4BG086800 Rh4CG097500 Rh4DG081200
rosa_wichuraiana	Rw4G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AciI	CCGC	4 cut(s)	76, 240, 243, 335
AfaI	GTAC	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	4 cut(s)	161, 194, 491, 627
AluBI	AGCT	1 cut(s)	532
AluI	AGCT	1 cut(s)	532
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	2 cut(s)	138, 240
AlwNI	CAGNNNCTG	1 cut(s)	472
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	4 cut(s)	53, 83, 121, 529
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	338, 493
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	65, 95, 133, 541
BccI	CCATC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	138, 240
BfaI	CTAG	2 cut(s)	512, 533
BfmI	CTRYAG	2 cut(s)	51, 639
BisI	GCNGC	5 cut(s)	54, 84, 122, 241, 530
BlsI	GCNGC	5 cut(s)	55, 85, 123, 242, 531
BmcAI	AGTACT	1 cut(s)	113
BmsI	GCATC	3 cut(s)	24, 116, 273
BsaI	GGTCTC	1 cut(s)	138
Bse3DI	GCAATG	2 cut(s)	410, 467
BseGI	GGATG	1 cut(s)	343
BseMI	GCAATG	2 cut(s)	410, 467
BseRI	GAGGAG	4 cut(s)	85, 225, 228, 293
BseXI	GCAGC	4 cut(s)	65, 95, 133, 541
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	600
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	138, 240
BsmFI	GGGAC	1 cut(s)	243
BsmI	GAATGC	3 cut(s)	4, 85, 170
BsnI	GGCC	1 cut(s)	600
Bso31I	GGTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	340
Bsp68I	TCGCGA	1 cut(s)	96
BspACI	CCGC	4 cut(s)	76, 240, 243, 335
BspANI	GGCC	1 cut(s)	600
BspFNI	CGCG	1 cut(s)	96
BspMAI	CTGCAG	2 cut(s)	55, 643
BspTNI	GGTCTC	1 cut(s)	138
BsrDI	GCAATG	2 cut(s)	410, 467
BssMI	GATC	1 cut(s)	340
Bst4CI	ACNGT	2 cut(s)	116, 474
BstC8I	GCNNGC	3 cut(s)	410, 602, 643
BstDEI	CTNAG	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	2 cut(s)	138, 240
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 400, 409, 535, 583, 592, 601, 610
BstNSI	RCATGY	1 cut(s)	298
BstSFI	CTRYAG	2 cut(s)	51, 639
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	4 cut(s)	65, 95, 133, 541
BsuRI	GGCC	1 cut(s)	600
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	3 cut(s)	18, 278, 389
BtsIMutI	CAGTG	4 cut(s)	18, 278, 389, 470
BtuMI	TCGCGA	1 cut(s)	96
Cac8I	GCNNGC	3 cut(s)	410, 602, 643
CaiI	CAGNNNCTG	1 cut(s)	472
CfoI	GCGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	2 cut(s)	181, 295
CviJI	RGCY	7 cut(s)	86, 412, 532, 600, 618, 623, 645
CviKI_1	RGCY	7 cut(s)	86, 412, 532, 600, 618, 623, 645
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
EciI	GGCGGA	2 cut(s)	91, 258
Eco31I	GGTCTC	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	184, 298
FaiI	YATR	3 cut(s)	103, 182, 296
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	180, 294
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	5 cut(s)	54, 84, 122, 241, 530
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	5 cut(s)	54, 84, 122, 241, 530
FspBI	CTAG	2 cut(s)	512, 533
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	5 cut(s)	54, 84, 122, 241, 530
HaeIII	GGCC	1 cut(s)	600
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	184, 298
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	569
HindII	GTYRAC	1 cut(s)	569
HinfI	GANTC	1 cut(s)	635
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	338, 493
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	3 cut(s)	33, 108, 468
Hpy188III	TCNNGA	2 cut(s)	95, 161
Hpy8I	GTNNAC	1 cut(s)	569
HpyCH4III	ACNGT	2 cut(s)	116, 474
HpyCH4V	TGCA	9 cut(s)	4, 53, 83, 180, 235, 319, 394, 408, 641
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 400, 409, 535, 583, 592, 601, 610
HpyF3I	CTNAG	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	184, 298
HspAI	GCGC	1 cut(s)	21
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	4 cut(s)	65, 95, 133, 541
LweI	GCATC	3 cut(s)	24, 116, 273
MaeI	CTAG	2 cut(s)	512, 533
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	3 cut(s)	320, 486, 627
MlyI	GAGTC	1 cut(s)	629
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	252
MspI	CCGG	1 cut(s)	18
Mva1269I	GAATGC	3 cut(s)	4, 85, 170
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	8 cut(s)	62, 400, 409, 535, 583, 592, 601, 610
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	2 cut(s)	184, 298
NruI	TCGCGA	1 cut(s)	96
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	298
PciI	ACATGT	1 cut(s)	294
PctI	GAATGC	3 cut(s)	4, 85, 170
PkrI	GCNGC	5 cut(s)	55, 85, 123, 242, 531
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
PscI	ACATGT	1 cut(s)	294
PstI	CTGCAG	2 cut(s)	55, 643
PstNI	CAGNNNCTG	1 cut(s)	472
RruI	TCGCGA	1 cut(s)	96
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	5 cut(s)	54, 84, 122, 241, 530
Sau3AI	GATC	1 cut(s)	340
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	1 cut(s)	629
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	6 cut(s)	31, 226, 328, 534, 568, 592
SfaNI	GCATC	3 cut(s)	24, 116, 273
SfcI	CTRYAG	2 cut(s)	51, 639
Sse9I	AATT	3 cut(s)	320, 486, 627
SsiI	CCGC	4 cut(s)	76, 240, 243, 335
SspMI	CTAG	2 cut(s)	512, 533
TaaI	ACNGT	2 cut(s)	116, 474
TaqI	TCGA	1 cut(s)	443
TasI	AATT	3 cut(s)	320, 486, 627
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	4 cut(s)	18, 278, 396, 477
TseI	GCWGC	4 cut(s)	53, 83, 121, 529
TspDTI	ATGAA	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	4 cut(s)	18, 278, 396, 477
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	2 cut(s)	512, 533
ZrmI	AGTACT	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.