RchiOBHm_Chr4g0398791

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007221
Physical Location & Seq
Reverse (-)
15526948 .. 15532088
5141 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37095

Sequence Viewer

Length: 1134 bp
ATGTTAAATTTCTTAGGGAGGAAAGATGTCAGGAAGATTCTCAAACGCAAGGATAGTGATGCTGGTGAAAGAGGAAAAGCTCTTGAAGACTTGCGGTCTTCTCTATTCAATGTGTTTCGCTCACCTGAAGGTGCAAAGCGTCAACAGCAACAACTATGTGGCCCTGCAACTGCTCTTACATTCAATTTTATAGTTGCTGTTGGTATAATTTTCATGAACAAATTGGTGCTCAAAGTTGTTGGGTTCCAGTTTCCTATATTTCTCACTTTTATCCACTACGTTGTAAGCTGGTTATTGATGGCCATTCTGAAATCTCTGTCTATCCTCCCTGCATCTCCCTCAAAATCGGCTCGCTTATCTACGTTATTTACTCTTGGCTTTGTTATGGCTCTATCCACCGGCCTTGCTAATGTTAGCTTAAAGTACAATAGTGTGGGTTTTTATCAGATGTCTAAGATTGCGGTTACCCCATCAATTGTTCTCGCAGAATTTTTACTCTACAATAAGAGAGTGTCTTTTTCCAAGGTCCTAACACTTGCAGTAGTATCTTTTGGTGTTGCTGTGGCTACTGTAACGGATCTGCAATTCCATCTCTTTGGTGCTTGTATAGCATTAGCATGGATAATACCTAGTGCAATTAATAAGATTCTTTGGTCTAGTCTGCAACAGCAGGAGAACTGGACAGCATTGGCGTTAATGTGGAAGACAACACCAGTTACTTTATTTTTTCTGGTCGCACTGATACCCTGGTTGGATCCACCTGGTGCTCTCTCCTTTAATTGGAGTTTTAATAACACCTCAGCAATTCTCATGTCAGCTATTCTCGGCTTCTTACTTCAGTGGTCTGGTGCTCTAGCTCTTGGGGCTACATCTGCTGTTACACATGTTGTTCTTGGTCAATTCAAAACATGTGTCATTCTTCTTGGAAACTACTACCTGTTTAGTTCCAATCCAGGCAAGACCAGTATTTGTGGGGCCTTCACAGCAATTGCCGGAATGTCCATTTACACTTACCTAAATTTGAGGCAGCAATCAAGCAGAACATCCCCACGACAAGTCTCTACATTACCAAAATCTAAACTGAGTAAAGAAAATGGCAACCATGATGGAAATTACGGGGCCGAATCTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

377

Amino Acids

41.29

Weight (kDa)

9.96

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 61 - 336 7.6e-16 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 94, 461
AclWI GGATC 3 cut(s) 585, 749, 762
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 3 cut(s) 7, 488, 1018
AcuI CTGAAG 2 cut(s) 147, 821
AdeI CACNNNGTG 1 cut(s) 764
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 780
AflIII ACRYGT 2 cut(s) 883, 908
AgsI TTSAA 4 cut(s) 86, 109, 184, 904
AhdI GACNNNNNGTC 1 cut(s) 94
AjnI CCWGG 3 cut(s) 746, 760, 952
AluBI AGCT 5 cut(s) 80, 288, 417, 818, 857
AluI AGCT 5 cut(s) 80, 288, 417, 818, 857
Alw21I GWGCWC 3 cut(s) 231, 769, 853
Alw26I GTCTC 1 cut(s) 1063
AlwI GGATC 3 cut(s) 585, 749, 762
AoxI GGCC 5 cut(s) 160, 300, 400, 975, 1119
ApeKI GCWGC 1 cut(s) 1027
ApoI RAATTY 3 cut(s) 7, 488, 1018
ArsI GACNNNNNNTTYG 2 cut(s) 897, 929
AseI ATTAAT 1 cut(s) 639
AspS9I GGNCC 4 cut(s) 161, 526, 975, 1119
AsuHPI GGTGA 2 cut(s) 77, 114
AvaII GGWCC 1 cut(s) 526
BaeI ACNNNNGTAYC 2 cut(s) 734, 767
BalI TGGCCA 1 cut(s) 302
BamHI GGATCC 1 cut(s) 754
BbsI GAAGAC 3 cut(s) 90, 93, 710
Bbv12I GWGCWC 3 cut(s) 231, 769, 853
BbvCI CCTCAGC 1 cut(s) 799
BbvI GCAGC 1 cut(s) 1039
BccI CCATC 4 cut(s) 292, 478, 597, 1100
BciT130I CCWGG 3 cut(s) 748, 762, 954
BcoDI GTCTC 1 cut(s) 1063
BfaI CTAG 3 cut(s) 630, 657, 854
BisI GCNGC 1 cut(s) 1028
BlsI GCNGC 1 cut(s) 1029
Bme1390I CCNGG 3 cut(s) 748, 762, 954
Bme18I GGWCC 1 cut(s) 526
BmeRI GACNNNNNGTC 1 cut(s) 94
BmgT120I GGNCC 4 cut(s) 161, 526, 975, 1119
BmiI GGNNCC 4 cut(s) 245, 756, 976, 1120
BmrFI CCNGG 3 cut(s) 748, 762, 954
BmsI GCATC 2 cut(s) 49, 341
BpiI GAAGAC 3 cut(s) 90, 93, 710
Bpu10I CCTNAGC 1 cut(s) 799
BsaJI CCNNGG 2 cut(s) 522, 746
Bsc4I CCNNNNNNNGG 1 cut(s) 780
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 4 cut(s) 247, 683, 713, 963
BseBI CCWGG 3 cut(s) 748, 762, 954
BseDI CCNNGG 2 cut(s) 522, 746
BseGI GGATG 1 cut(s) 1043
BseLI CCNNNNNNNGG 1 cut(s) 780
BseMII CTCAG 2 cut(s) 813, 1073
BseNI ACTGG 4 cut(s) 247, 683, 713, 963
BseXI GCAGC 1 cut(s) 1039
BshFI GGCC 5 cut(s) 162, 302, 402, 977, 1121
BsiHKAI GWGCWC 3 cut(s) 231, 769, 853
BsiSI CCGG 2 cut(s) 399, 993
BslI CCNNNNNNNGG 1 cut(s) 780
BsmAI GTCTC 1 cut(s) 1063
BsnI GGCC 5 cut(s) 162, 302, 402, 977, 1121
Bsp1286I GDGCHC 3 cut(s) 231, 769, 853
Bsp143I GATC 2 cut(s) 577, 754
BspACI CCGC 2 cut(s) 94, 461
BspANI GGCC 5 cut(s) 162, 302, 402, 977, 1121
BspCNI CTCAG 2 cut(s) 812, 1074
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 4 cut(s) 245, 756, 976, 1120
BspPI GGATC 3 cut(s) 585, 749, 762
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 4 cut(s) 247, 683, 713, 963
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 522, 746
BssMI GATC 2 cut(s) 577, 754
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 3 cut(s) 748, 762, 954
Bst4CI ACNGT 1 cut(s) 571
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 4 cut(s) 13, 453, 799, 1082
BstEII GGTNACC 1 cut(s) 463
BstF5I GGATG 1 cut(s) 1043
BstKTI GATC 2 cut(s) 580, 757
BstMAI GTCTC 1 cut(s) 1063
BstMBI GATC 2 cut(s) 577, 754
BstMWI GCNNNNNNNGC 5 cut(s) 145, 608, 863, 872, 983
BstNI CCWGG 3 cut(s) 748, 762, 954
BstNSI RCATGY 2 cut(s) 887, 912
BstPI GGTNACC 1 cut(s) 463
BstSCI CCNGG 3 cut(s) 746, 760, 952
BstV1I GCAGC 1 cut(s) 1039
BstV2I GAAGAC 3 cut(s) 90, 93, 710
BstX2I RGATCY 2 cut(s) 577, 754
BstXI CCANNNNNNTGG 1 cut(s) 596
BstYI RGATCY 2 cut(s) 577, 754
BsuRI GGCC 5 cut(s) 162, 302, 402, 977, 1121
BtsCI GGATG 1 cut(s) 1043
BtsIMutI CAGTG 2 cut(s) 737, 845
Cac8I GCNNGC 1 cut(s) 352
CciI TCATGA 1 cut(s) 213
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 4 cut(s) 161, 526, 975, 1119
CseI GACGC 1 cut(s) 128
CsiI ACCWGGT 1 cut(s) 760
Csp6I GTAC 1 cut(s) 424
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 6 cut(s) 214, 618, 811, 884, 909, 1103
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 4 cut(s) 13, 453, 799, 1082
DpnI GATC 2 cut(s) 579, 756
DpnII GATC 2 cut(s) 577, 754
DraIII CACNNNGTG 1 cut(s) 764
DriI GACNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 300
Eam1105I GACNNNNNGTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 147, 821
Eco91I GGTNACC 1 cut(s) 463
EcoO109I RGGNCCY 2 cut(s) 526, 975
EcoO65I GGTNACC 1 cut(s) 463
EcoRII CCWGG 3 cut(s) 746, 760, 952
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 6 cut(s) 217, 621, 814, 887, 912, 1106
FatI CATG 6 cut(s) 213, 617, 810, 883, 908, 1102
Fnu4HI GCNGC 1 cut(s) 1028
FokI GGATG 1 cut(s) 1030
Fsp4HI GCNGC 1 cut(s) 1028
FspBI CTAG 3 cut(s) 630, 657, 854
GluI GCNGC 1 cut(s) 1028
HaeIII GGCC 5 cut(s) 162, 302, 402, 977, 1121
HapII CCGG 2 cut(s) 399, 993
HgaI GACGC 1 cut(s) 128
Hin1II CATG 6 cut(s) 217, 621, 814, 887, 912, 1106
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HinfI GANTC 3 cut(s) 37, 646, 1124
HpaII CCGG 2 cut(s) 399, 993
HphI GGTGA 2 cut(s) 77, 114
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 309, 447
Hpy188III TCNNGA 3 cut(s) 31, 83, 214
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 122, 988
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4IV ACGT 2 cut(s) 279, 362
HpyCH4V TGCA 7 cut(s) 134, 167, 332, 539, 583, 635, 664
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 608, 863, 872, 983
HpyF3I CTNAG 4 cut(s) 13, 453, 799, 1082
HpySE526I ACGT 2 cut(s) 279, 362
Hsp92II CATG 6 cut(s) 217, 621, 814, 887, 912, 1106
Kzo9I GATC 2 cut(s) 577, 754
Lsp1109I GCAGC 1 cut(s) 1039
LweI GCATC 2 cut(s) 49, 341
MabI ACCWGGT 1 cut(s) 760
MaeI CTAG 3 cut(s) 630, 657, 854
MaeII ACGT 2 cut(s) 279, 362
MaeIII GTNAC 4 cut(s) 463, 571, 715, 877
MalI GATC 2 cut(s) 579, 756
MboI GATC 2 cut(s) 577, 754
MboII GAAGA 5 cut(s) 46, 90, 98, 715, 911
MfeI CAATTG 2 cut(s) 474, 987
MflI RGATCY 2 cut(s) 577, 754
MhlI GDGCHC 3 cut(s) 231, 769, 853
MlsI TGGCCA 1 cut(s) 302
MluNI TGGCCA 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 732
MnlI CCTC 6 cut(s) 12, 65, 335, 349, 808, 1017
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
MseI TTAA 6 cut(s) 5, 419, 639, 695, 777, 789
MslI CAYNNNNRTG 1 cut(s) 616
Msp20I TGGCCA 1 cut(s) 302
MspI CCGG 2 cut(s) 399, 993
MspR9I CCNGG 3 cut(s) 748, 762, 954
MunI CAATTG 2 cut(s) 474, 987
MvaI CCWGG 3 cut(s) 748, 762, 954
MwoI GCNNNNNNNGC 5 cut(s) 145, 608, 863, 872, 983
NdeII GATC 2 cut(s) 577, 754
NlaIII CATG 6 cut(s) 217, 621, 814, 887, 912, 1106
NlaIV GGNNCC 4 cut(s) 245, 756, 976, 1120
NmeAIII GCCGAG 1 cut(s) 804
NspI RCATGY 2 cut(s) 887, 912
PagI TCATGA 1 cut(s) 213
PciI ACATGT 2 cut(s) 883, 908
PfeI GAWTC 3 cut(s) 37, 646, 1124
PkrI GCNGC 1 cut(s) 1029
PpuMI RGGWCCY 1 cut(s) 526
PscI ACATGT 2 cut(s) 883, 908
PshBI ATTAAT 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 526
Psp6I CCWGG 3 cut(s) 746, 760, 952
PspEI GGTNACC 1 cut(s) 463
PspGI CCWGG 3 cut(s) 746, 760, 952
PspN4I GGNNCC 4 cut(s) 245, 756, 976, 1120
PspPI GGNCC 4 cut(s) 161, 526, 975, 1119
PspPPI RGGWCCY 1 cut(s) 526
PsuI RGATCY 2 cut(s) 577, 754
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 616
SaqAI TTAA 6 cut(s) 5, 419, 639, 695, 777, 789
SatI GCNGC 1 cut(s) 1028
Sau3AI GATC 2 cut(s) 577, 754
Sau96I GGNCC 4 cut(s) 161, 526, 975, 1119
ScrFI CCNGG 3 cut(s) 748, 762, 954
SduI GDGCHC 3 cut(s) 231, 769, 853
SexAI ACCWGGT 1 cut(s) 760
SfaNI GCATC 2 cut(s) 49, 341
SinI GGWCC 1 cut(s) 526
SmiMI CAYNNNNRTG 1 cut(s) 616
SsiI CCGC 2 cut(s) 94, 461
SspMI CTAG 3 cut(s) 630, 657, 854
StyD4I CCNGG 3 cut(s) 746, 760, 952
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 571
TaiI ACGT 2 cut(s) 282, 365
TatI WGTACW 1 cut(s) 423
TfiI GAWTC 3 cut(s) 37, 646, 1124
Tru1I TTAA 6 cut(s) 5, 419, 639, 695, 777, 789
Tru9I TTAA 6 cut(s) 5, 419, 639, 695, 777, 789
TscAI CASTG 2 cut(s) 744, 845
TseI GCWGC 1 cut(s) 1027
TspDTI ATGAA 2 cut(s) 202, 230
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 2 cut(s) 744, 845
VpaK11BI GGWCC 1 cut(s) 526
VspI ATTAAT 1 cut(s) 639
XapI RAATTY 3 cut(s) 7, 488, 1018
XceI RCATGY 2 cut(s) 887, 912
XspI CTAG 3 cut(s) 630, 657, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.