Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007221

Physical Location & Seq

Genomic Coordinates Reverse (-)

17422301 .. 17424748

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTAAACTTCTTTGTGAGGAAAGGCGTTAGGAAGATTCTCAAGCGCAAGGACAGTGATGCTGGTGAAAGAGGAAGAGCTCTAGAAGACTTAAGATCTACCCTTTTTAATGAATTCCGCTCAGCCGATGGTGCAAAGCGTCAACAACAACAGCGATGTGGCCCTGCCACTGCTCTTACCTTCAATTTTGTAATTGCTGTCGGCATAATTTTCGTGAACAAATTGGTGCTCAAAGTTGTCGGGTTCCAGTTTCCTATATTTCTCACCTTTATCCACTATGTGGTAAGCTGGTTGTTGATGGCCATTCTAAATGCTCTATCTATCCTCCCTGCATGTCCCTCAAAATCGACCCGCTTATCTACATTATTTACTCTTGGCTTTGTTATGGCTTTCTCTACTGGCCTTGCTAATGTTAGCTTGAAGTATAATAGTGTGGGGTTCTATCAGATGTCTAAGATTGCGGTTACGCCATCAATTGTTCTCGCAGAATTTTTGTTGTACAACAAGAGAGTTTCTTTCTCGAAGGTTCTAGCACTTACGGTAGTATCGATTGGTGTTGCCGTGGCTACAGTCACTGATCGTTCAATTTCATCTCTTTGGTGCTTGTATAGCATTAGCATGGATAATACCAAGTGCAGTCAACAAAATTCTTTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

220

Amino Acids

24.27

Weight (kDa)

10.11

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57100 AT5G57100 AT5G57100 AT5G57100
fragaria_vesca	FvH4_4g06880 FvH4_4g06880
malus_domestica	MD13G1241400.v1.1 MD16G1244800.v1.1
prunus_persica	Prupe.1G071900_v2.0.a1 Prupe.1G071900_v2.0.a1
pyrus_communis	pycom13g21170 pycom16g20600
rosa_chinensis	RchiOBHm_Chr4g0398791
rosa_laevigata	RLG00000009322
rosa_multiflora	Rmu_sc0000458.1_g000010
rosa_roxburghii	Rroxscaffold_5G00343720
rosa_rugosa	Rorug04G0011500 Rorug04G0011600 Rorug04G0011700 Rorug04G0011800
rosa_samantha	Rh4AG089400 Rh4BG086800 Rh4CG097500 Rh4DG081200
rosa_wichuraiana	Rw4G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccBSI	CCGCTC	1 cut(s)	120
AciI	CCGC	3 cut(s)	118, 352, 461
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	3 cut(s)	113, 488, 646
AdeI	CACNNNGTG	1 cut(s)	280
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	1 cut(s)	280
AflII	CTTAAG	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	184, 421, 585
AluBI	AGCT	3 cut(s)	80, 288, 417
AluI	AGCT	3 cut(s)	80, 288, 417
Alw21I	GWGCWC	2 cut(s)	82, 231
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	3 cut(s)	160, 300, 400
ApoI	RAATTY	3 cut(s)	113, 488, 646
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	77, 256
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BalI	TGGCCA	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	82, 231
BccI	CCATC	3 cut(s)	122, 292, 478
BceAI	ACGGC	1 cut(s)	545
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BfaI	CTAG	3 cut(s)	83, 530, 658
BfmI	CTRYAG	1 cut(s)	567
BfrI	CTTAAG	1 cut(s)	91
BglII	AGATCT	1 cut(s)	95
BlpI	GCTNAGC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	245
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	247, 403
BseCI	ATCGAT	1 cut(s)	548
BseDI	CCNNGG	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	247, 403
BsgI	GTGCAG	1 cut(s)	655
BshFI	GGCC	3 cut(s)	162, 302, 402
BshVI	ATCGAT	1 cut(s)	548
BsiHKAI	GWGCWC	2 cut(s)	82, 231
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	3 cut(s)	162, 302, 402
Bsp1286I	GDGCHC	2 cut(s)	82, 231
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	2 cut(s)	95, 577
Bsp1720I	GCTNAGC	1 cut(s)	121
BspACI	CCGC	3 cut(s)	118, 352, 461
BspANI	GGCC	3 cut(s)	162, 302, 402
BspCNI	CTCAG	1 cut(s)	134
BspDI	ATCGAT	1 cut(s)	548
BspLI	GGNNCC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	247, 403
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	2 cut(s)	95, 577
Bst4CI	ACNGT	3 cut(s)	56, 541, 571
Bst6I	CTCTTC	1 cut(s)	70
BstAFI	CTTAAG	1 cut(s)	91
BstAUI	TGTACA	1 cut(s)	498
BstDEI	CTNAG	2 cut(s)	121, 453
BstDSI	CCRYGG	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	98, 580
BstMBI	GATC	2 cut(s)	95, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 609
BstNSI	RCATGY	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	567
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	548
BsuRI	GGCC	3 cut(s)	162, 302, 402
BsuTUI	ATCGAT	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	561
BtgZI	GCGATG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	3 cut(s)	61, 168, 573
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	161
ClaI	ATCGAT	1 cut(s)	548
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	2 cut(s)	333, 619
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	2 cut(s)	121, 453
DpnI	GATC	2 cut(s)	97, 579
DpnII	GATC	2 cut(s)	95, 577
DraIII	CACNNNGTG	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	82
FaeI	CATG	2 cut(s)	336, 622
FaiI	YATR	8 cut(s)	206, 257, 279, 334, 386, 426, 609, 620
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	2 cut(s)	332, 618
FauI	CCCGC	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	82
FspBI	CTAG	3 cut(s)	83, 530, 658
GlaI	GCGC	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	162, 302, 402
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	336, 622
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HincII	GTYRAC	2 cut(s)	143, 641
HindII	GTYRAC	2 cut(s)	143, 641
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	2 cut(s)	77, 256
Hpy166II	GTNNAC	3 cut(s)	143, 217, 641
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	3 cut(s)	83, 214, 520
Hpy8I	GTNNAC	3 cut(s)	143, 217, 641
HpyAV	CCTTC	2 cut(s)	190, 517
HpyCH4III	ACNGT	3 cut(s)	56, 541, 571
HpyCH4V	TGCA	3 cut(s)	134, 332, 636
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 609
HpyF3I	CTNAG	2 cut(s)	121, 453
Hsp92II	CATG	2 cut(s)	336, 622
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	95, 577
LguI	GCTCTTC	1 cut(s)	70
LpnPI	CCDG	6 cut(s)	48, 177, 260, 274, 342, 384
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	3 cut(s)	83, 530, 658
MaeIII	GTNAC	2 cut(s)	463, 571
MalI	GATC	2 cut(s)	97, 579
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	2 cut(s)	95, 577
MboII	GAAGA	3 cut(s)	46, 87, 98
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	2 cut(s)	82, 231
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	9 cut(s)	113, 184, 192, 207, 221, 474, 488, 585, 646
MluNI	TGGCCA	1 cut(s)	302
MnlI	CCTC	4 cut(s)	12, 65, 335, 349
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	3 cut(s)	5, 92, 108
MslI	CAYNNNNRTG	1 cut(s)	617
Msp20I	TGGCCA	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	131, 609
NdeII	GATC	2 cut(s)	95, 577
NlaIII	CATG	2 cut(s)	336, 622
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	1 cut(s)	571
NspI	RCATGY	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	617
SacI	GAGCTC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	70
SaqAI	TTAA	3 cut(s)	5, 92, 108
Sau3AI	GATC	2 cut(s)	95, 577
Sau96I	GGNCC	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	82, 231
SetI	ASST	6 cut(s)	82, 182, 269, 290, 419, 528
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	567
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	2 cut(s)	41, 91
SmoI	CTYRAG	2 cut(s)	41, 91
Sse9I	AATT	9 cut(s)	113, 184, 192, 207, 221, 474, 488, 585, 646
SsiI	CCGC	3 cut(s)	118, 352, 461
SspMI	CTAG	3 cut(s)	83, 530, 658
SstI	GAGCTC	1 cut(s)	82
TaaI	ACNGT	3 cut(s)	56, 541, 571
TaqI	TCGA	3 cut(s)	347, 521, 548
TasI	AATT	9 cut(s)	113, 184, 192, 207, 221, 474, 488, 585, 646
TatI	WGTACW	1 cut(s)	498
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	3 cut(s)	5, 92, 108
Tru9I	TTAA	3 cut(s)	5, 92, 108
TscAI	CASTG	3 cut(s)	61, 175, 580
TseFI	GTSAC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	2 cut(s)	126, 579
TspRI	CASTG	3 cut(s)	61, 175, 580
Van91I	CCANNNNNTGG	1 cut(s)	280
Vha464I	CTTAAG	1 cut(s)	91
XapI	RAATTY	3 cut(s)	113, 488, 646
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	1 cut(s)	336
XspI	CTAG	3 cut(s)	83, 530, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.