Rw4G007390

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007221
Physical Location & Seq
Reverse (-)
15597694 .. 15602466
4773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007390.1

Sequence Viewer

Length: 885 bp
ATGTTAAATTTCTTAGGGAGGAAAGATGTCAGGAAGATTCTCAAACGCAAGGATAGTGATGCTGGTGAAAGAGGAAAAGCTCTCGAAGACTTGCGGTCTTCGCTATTCAATGTGTTTCGCTCACCTGAAGGTGCAAAGCGTCAACAGCAACAACTATGTGGCCCTGCAACTGCCCTTACATTCAATTTTATAGTTGCTGTTGGTATAATTTTCATGAACAAATTGGTGCTCAAAGTTGTTGGGTTCCAGTTTCCTATATTTCTCACTTTTATCCACTACATTGTAAGCTGGTTATTGATGGCCATTCTGAAATCTCTGTCTATCCTCCCGGCATCTCCCTCAAAATCAGCTCGCTTATCTACGTTATTTACTCTTGGTTTTGTTATGGCTCTATCCACCGGCCTTGCTAATGTTAGCTTAAAGTACAATAGTGTGGGCTTTTATCAGATGTCTAAGATTGCGGTTACCCCATCAATTGTTCTCGCAGAATTTTTAATCTACAATAAGAGAGTGTCTTTTTCCAAGGTCCTAACACTTGCAGTAGTATCTTTTGGTGTTGCTGTGGCTACTGTAACAGATCTGCAATTCCATCTCTTTGGTGCTTGTATAGCATTAGCATGGATAATACCTAGTGCAATTAACAAGATTCTTTGGTCTAGTCTGCAACAGCAGGAGAACTGGACAGCGTTGGCGTTAATGTGGAAGACAACACCAGTTACTTTATTTTTTCTGGTCGCACTGATACCCTGGTTGGATCCACCTGGTGCTCTCTCCTTTAATTGGAGTTTTAATAACACCTCGGCAATTCTCATGTCAGCTATTCTCGGCTTCTTACTTCAGTGGTCTGGTGCTCTAGCTCTTGGGCACCTAATGGCTCTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

294

Amino Acids

32.47

Weight (kDa)

10.13

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 61 - 248 5.6e-13 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 864
AciI CCGC 2 cut(s) 94, 461
AclWI GGATC 2 cut(s) 749, 762
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 7, 488
AcuI CTGAAG 2 cut(s) 147, 821
AdeI CACNNNGTG 1 cut(s) 764
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 780
AgsI TTSAA 2 cut(s) 109, 184
AhdI GACNNNNNGTC 1 cut(s) 94
AjnI CCWGG 2 cut(s) 746, 760
AluBI AGCT 6 cut(s) 80, 288, 350, 417, 818, 857
AluI AGCT 6 cut(s) 80, 288, 350, 417, 818, 857
Alw21I GWGCWC 3 cut(s) 231, 769, 853
AlwI GGATC 2 cut(s) 749, 762
AoxI GGCC 3 cut(s) 160, 300, 400
ApoI RAATTY 2 cut(s) 7, 488
AspS9I GGNCC 2 cut(s) 161, 526
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 77, 114
AvaII GGWCC 1 cut(s) 526
BaeGI GKGCMC 1 cut(s) 867
BaeI ACNNNNGTAYC 2 cut(s) 734, 767
BalI TGGCCA 1 cut(s) 302
BamHI GGATCC 1 cut(s) 754
BanI GGYRCC 1 cut(s) 864
BbsI GAAGAC 3 cut(s) 90, 93, 710
Bbv12I GWGCWC 3 cut(s) 231, 769, 853
BccI CCATC 3 cut(s) 292, 478, 597
BciT130I CCWGG 2 cut(s) 748, 762
BcnI CCSGG 1 cut(s) 329
BfaI CTAG 3 cut(s) 630, 657, 854
BglII AGATCT 1 cut(s) 577
Bme1390I CCNGG 3 cut(s) 329, 748, 762
Bme18I GGWCC 1 cut(s) 526
BmeRI GACNNNNNGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 161, 526
BmiI GGNNCC 3 cut(s) 245, 756, 866
BmrFI CCNGG 3 cut(s) 329, 748, 762
BmsI GCATC 2 cut(s) 49, 341
BpiI GAAGAC 3 cut(s) 90, 93, 710
BpuMI CCSGG 1 cut(s) 329
BsaJI CCNNGG 3 cut(s) 522, 746, 798
Bsc4I CCNNNNNNNGG 1 cut(s) 780
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 3 cut(s) 247, 683, 713
BseBI CCWGG 2 cut(s) 748, 762
BseDI CCNNGG 3 cut(s) 522, 746, 798
BseLI CCNNNNNNNGG 1 cut(s) 780
BseNI ACTGG 3 cut(s) 247, 683, 713
BseSI GKGCMC 1 cut(s) 867
BshFI GGCC 3 cut(s) 162, 302, 402
BshNI GGYRCC 1 cut(s) 864
BsiHKAI GWGCWC 3 cut(s) 231, 769, 853
BsiSI CCGG 2 cut(s) 329, 399
BslI CCNNNNNNNGG 1 cut(s) 780
BsnI GGCC 3 cut(s) 162, 302, 402
Bsp1286I GDGCHC 4 cut(s) 231, 769, 853, 867
Bsp143I GATC 2 cut(s) 577, 754
BspACI CCGC 2 cut(s) 94, 461
BspANI GGCC 3 cut(s) 162, 302, 402
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 3 cut(s) 245, 756, 866
BspPI GGATC 2 cut(s) 749, 762
BspT107I GGYRCC 1 cut(s) 864
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 3 cut(s) 247, 683, 713
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 3 cut(s) 522, 746, 798
BssMI GATC 2 cut(s) 577, 754
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 2 cut(s) 748, 762
Bst4CI ACNGT 1 cut(s) 571
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 2 cut(s) 13, 453
BstEII GGTNACC 1 cut(s) 463
BstKTI GATC 2 cut(s) 580, 757
BstMBI GATC 2 cut(s) 577, 754
BstMWI GCNNNNNNNGC 3 cut(s) 100, 145, 608
BstNI CCWGG 2 cut(s) 748, 762
BstPI GGTNACC 1 cut(s) 463
BstSCI CCNGG 3 cut(s) 327, 746, 760
BstSLI GKGCMC 1 cut(s) 867
BstV2I GAAGAC 3 cut(s) 90, 93, 710
BstX2I RGATCY 2 cut(s) 577, 754
BstXI CCANNNNNNTGG 1 cut(s) 596
BstYI RGATCY 2 cut(s) 577, 754
BsuRI GGCC 3 cut(s) 162, 302, 402
BtsIMutI CAGTG 2 cut(s) 737, 845
Cac8I GCNNGC 1 cut(s) 352
CciI TCATGA 1 cut(s) 213
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 2 cut(s) 161, 526
CseI GACGC 1 cut(s) 128
CsiI ACCWGGT 1 cut(s) 760
Csp6I GTAC 1 cut(s) 424
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 3 cut(s) 214, 618, 811
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 2 cut(s) 13, 453
DpnI GATC 2 cut(s) 579, 756
DpnII GATC 2 cut(s) 577, 754
DraIII CACNNNGTG 1 cut(s) 764
DriI GACNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 300
Eam1105I GACNNNNNGTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 147, 821
Eco91I GGTNACC 1 cut(s) 463
EcoO109I RGGNCCY 1 cut(s) 526
EcoO65I GGTNACC 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 746, 760
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 3 cut(s) 217, 621, 814
FaiI YATR 9 cut(s) 157, 191, 206, 215, 257, 386, 608, 619, 812
FatI CATG 3 cut(s) 213, 617, 810
FspBI CTAG 3 cut(s) 630, 657, 854
HaeIII GGCC 3 cut(s) 162, 302, 402
HapII CCGG 2 cut(s) 329, 399
HgaI GACGC 1 cut(s) 128
Hin1II CATG 3 cut(s) 217, 621, 814
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HinfI GANTC 2 cut(s) 37, 646
HpaII CCGG 2 cut(s) 329, 399
HphI GGTGA 2 cut(s) 77, 114
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 309, 447
Hpy188III TCNNGA 3 cut(s) 31, 83, 214
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 6 cut(s) 134, 167, 539, 583, 635, 664
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 145, 608
HpyF3I CTNAG 2 cut(s) 13, 453
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 3 cut(s) 217, 621, 814
Kzo9I GATC 2 cut(s) 577, 754
LweI GCATC 2 cut(s) 49, 341
MabI ACCWGGT 1 cut(s) 760
MaeI CTAG 3 cut(s) 630, 657, 854
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 3 cut(s) 463, 571, 715
MalI GATC 2 cut(s) 579, 756
MboI GATC 2 cut(s) 577, 754
MboII GAAGA 4 cut(s) 46, 90, 98, 715
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 2 cut(s) 577, 754
MhlI GDGCHC 4 cut(s) 231, 769, 853, 867
MlsI TGGCCA 1 cut(s) 302
MluNI TGGCCA 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 732
MnlI CCTC 5 cut(s) 12, 65, 335, 349, 808
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
MseI TTAA 7 cut(s) 5, 419, 494, 639, 695, 777, 789
MslI CAYNNNNRTG 1 cut(s) 616
Msp20I TGGCCA 1 cut(s) 302
MspI CCGG 2 cut(s) 329, 399
MspR9I CCNGG 3 cut(s) 329, 748, 762
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 2 cut(s) 748, 762
MwoI GCNNNNNNNGC 3 cut(s) 100, 145, 608
NciI CCSGG 1 cut(s) 329
NdeII GATC 2 cut(s) 577, 754
NlaIII CATG 3 cut(s) 217, 621, 814
NlaIV GGNNCC 3 cut(s) 245, 756, 866
NmeAIII GCCGAG 2 cut(s) 779, 804
PagI TCATGA 1 cut(s) 213
PfeI GAWTC 2 cut(s) 37, 646
PpuMI RGGWCCY 1 cut(s) 526
Psp5II RGGWCCY 1 cut(s) 526
Psp6I CCWGG 2 cut(s) 746, 760
PspEI GGTNACC 1 cut(s) 463
PspGI CCWGG 2 cut(s) 746, 760
PspN4I GGNNCC 3 cut(s) 245, 756, 866
PspPI GGNCC 2 cut(s) 161, 526
PspPPI RGGWCCY 1 cut(s) 526
PsuI RGATCY 2 cut(s) 577, 754
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 616
SaqAI TTAA 7 cut(s) 5, 419, 494, 639, 695, 777, 789
Sau3AI GATC 2 cut(s) 577, 754
Sau96I GGNCC 2 cut(s) 161, 526
ScrFI CCNGG 3 cut(s) 329, 748, 762
SduI GDGCHC 4 cut(s) 231, 769, 853, 867
SexAI ACCWGGT 1 cut(s) 760
SfaNI GCATC 2 cut(s) 49, 341
SinI GGWCC 1 cut(s) 526
SmiMI CAYNNNNRTG 1 cut(s) 616
SsiI CCGC 2 cut(s) 94, 461
SspMI CTAG 3 cut(s) 630, 657, 854
StyD4I CCNGG 3 cut(s) 327, 746, 760
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 571
TaiI ACGT 1 cut(s) 365
TaqI TCGA 1 cut(s) 84
TatI WGTACW 1 cut(s) 423
TfiI GAWTC 2 cut(s) 37, 646
Tru1I TTAA 7 cut(s) 5, 419, 494, 639, 695, 777, 789
Tru9I TTAA 7 cut(s) 5, 419, 494, 639, 695, 777, 789
TscAI CASTG 2 cut(s) 744, 845
TspDTI ATGAA 2 cut(s) 202, 230
TspRI CASTG 2 cut(s) 744, 845
VpaK11BI GGWCC 1 cut(s) 526
XapI RAATTY 2 cut(s) 7, 488
XspI CTAG 3 cut(s) 630, 657, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.