Rorug04G0011800

membrane protein At1g06890-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007221
Physical Location & Seq
Reverse (-)
1947846 .. 1948181
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0011800.1

Sequence Viewer

Length: 336 bp
ATGATTAACCCAAGTAGAGATCCTGAAGACCGATTTGAGCAACAATGCGAGAAGCGCTGTGTCTTGGAACTTGGCGAACACAAGCAGCTGCAGTGTCACCAACGCTGCGTGGAGCTTACAAAGGAGCAAAAGCAATGCCAGCGGAGTTGCCAAATGCAGGGACGTGGTGATCAATGCCAAAGAACATGTATGCAGCAACTTGAAGAGCAACTAAGGAAACAACCAGAACAAATAGGCAGAGGGGGCGAGAACCCACAAACAGAAACAGGGATTCTTCAGTCAAAATTGCGATCTGAAAAAGATGAAATGTATGTTCTTGAGGGGTTAAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

111

Amino Acids

13.08

Weight (kDa)

5.75

Isoelectric Point (pI)

70.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AclWI GGATC 1 cut(s) 14
AcuI CTGAAG 2 cut(s) 45, 260
AfeI AGCGCT 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 157
AflIII ACRYGT 2 cut(s) 185, 330
AgsI TTSAA 1 cut(s) 203
AjiI CACGTC 1 cut(s) 164
AluBI AGCT 2 cut(s) 88, 115
AluI AGCT 2 cut(s) 88, 115
AlwI GGATC 1 cut(s) 14
Aor51HI AGCGCT 1 cut(s) 56
ApeKI GCWGC 4 cut(s) 85, 88, 105, 193
AspLEI GCGC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 89, 179
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 4 cut(s) 75, 92, 97, 205
BclI TGATCA 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 58
BisI GCNGC 4 cut(s) 86, 89, 106, 194
BlsI GCNGC 4 cut(s) 87, 90, 107, 195
BmgBI CACGTC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 140
BseXI GCAGC 4 cut(s) 75, 92, 97, 205
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 174
Bsp143I GATC 3 cut(s) 19, 169, 290
BspACI CCGC 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 93
BspPI GGATC 1 cut(s) 14
BspQI GCTCTTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 140
BssMI GATC 3 cut(s) 19, 169, 290
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 3 cut(s) 22, 172, 293
BstMBI GATC 3 cut(s) 19, 169, 290
BstMWI GCNNNNNNNGC 3 cut(s) 54, 139, 243
BstNSI RCATGY 2 cut(s) 189, 334
BstSFI CTRYAG 1 cut(s) 89
BstV1I GCAGC 4 cut(s) 75, 92, 97, 205
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BtrI CACGTC 1 cut(s) 164
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 140
CfoI GCGC 1 cut(s) 57
CviAII CATG 2 cut(s) 186, 331
CviJI RGCY 2 cut(s) 88, 115
CviKI_1 RGCY 2 cut(s) 88, 115
DdeI CTNAG 1 cut(s) 212
DpnI GATC 3 cut(s) 21, 171, 292
DpnII GATC 3 cut(s) 19, 169, 290
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco47III AGCGCT 1 cut(s) 56
Eco57I CTGAAG 2 cut(s) 45, 260
FaeI CATG 2 cut(s) 189, 334
FaiI YATR 4 cut(s) 187, 191, 312, 332
FaqI GGGAC 1 cut(s) 174
FatI CATG 2 cut(s) 185, 330
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 4 cut(s) 86, 89, 106, 194
Fsp4HI GCNGC 4 cut(s) 86, 89, 106, 194
GlaI GCGC 1 cut(s) 56
GluI GCNGC 4 cut(s) 86, 89, 106, 194
HaeII RGCGCY 1 cut(s) 58
HhaI GCGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 189, 334
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 271
HphI GGTGA 2 cut(s) 89, 179
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 2 cut(s) 23, 317
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 91, 157, 193
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 139, 243
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 2 cut(s) 189, 334
HspAI GCGC 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 19, 169, 290
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 112, 124
LpnPI CCDG 5 cut(s) 36, 143, 152, 237, 252
Lsp1109I GCAGC 4 cut(s) 75, 92, 97, 205
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 95
MalI GATC 3 cut(s) 21, 171, 292
MboI GATC 3 cut(s) 19, 169, 290
MboII GAAGA 3 cut(s) 38, 215, 266
MflI RGATCY 1 cut(s) 19
MluCI AATT 1 cut(s) 284
MnlI CCTC 2 cut(s) 233, 313
MseI TTAA 2 cut(s) 6, 326
MspA1I CMGCKG 2 cut(s) 88, 142
MwoI GCNNNNNNNGC 3 cut(s) 54, 139, 243
NdeII GATC 3 cut(s) 19, 169, 290
NlaIII CATG 2 cut(s) 189, 334
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 2 cut(s) 189, 334
PciI ACATGT 2 cut(s) 185, 330
PciSI GCTCTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 4 cut(s) 87, 90, 107, 195
PscI ACATGT 2 cut(s) 185, 330
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 88
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 6, 326
SatI GCNGC 4 cut(s) 86, 89, 106, 194
Sau3AI GATC 3 cut(s) 19, 169, 290
SetI ASST 3 cut(s) 90, 117, 166
SfcI CTRYAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 1 cut(s) 284
SsiI CCGC 1 cut(s) 142
TaiI ACGT 1 cut(s) 166
TaqII GACCGA 1 cut(s) 45
TasI AATT 1 cut(s) 284
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 6, 326
Tru9I TTAA 2 cut(s) 6, 326
TscAI CASTG 1 cut(s) 98
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 4 cut(s) 85, 88, 105, 193
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 318
TspRI CASTG 1 cut(s) 98
XceI RCATGY 2 cut(s) 189, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.