Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007221

Physical Location & Seq

Genomic Coordinates Reverse (-)

5100318 .. 5105347

Gene Structure 5030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G071900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTTAAATTTCTTAGTAAGGAAAGACGTTAAGAAGATTCTCAAGCGCAAGGATAGTGATGCTGGTGAAAGAGGAAGAGCTCTAGAAGACTTGCGGGCAGCCCTATTTAATGAATTTCGCTCATCTGAAGGTGCAAAGCGTCAACAACAACAACTATGTGGCCCTGCTACTGCTCTTACATTCAATTTTGTAATTGCTGTTGGTATAATTTTCGTGAACAAATTGGTGCTCAAAGTTGTTGGGTTCCAGTTTCCTATATTTCTCACTTTTATCCACTATGTCGTTAGCTGGTTTTTGATGGCCGTTCTAAATGCTCTGTCTATCCTCCCTGCATGTCCCCCAAAATCGACCCGCTTATCTACGTTATTTACTCTTGGTTTTGTTATGGCCTTTTCTACTGGCCTTGCTAATGTTAGTTTGAAGTACAATAGTGTGGGGTTTTATCAGATGTCTAAGATTGCGGTTACTCCATCAATTGTTCTCGCAGAATTTTTATTGTACAATAAGAGAGTTTCTTTCTCCAAGGTTCTAGCACTTACAGTAGTATCCTTTGGTGTTGCCGTGGCTACAGTAACTGATCTGCAATTCCATCTCTTTGGTGCTTGTGTAGCATTAGCATGGATAATACCAAGTGCAGTCAACAAGATTCTTTGGTCTAGTCTGCAACAGCAGGAAAATTGGACAGCCTTGGCGTTAATGTGGAAGACAACACCAATCACCTTATTTTTCCTTGTTGCACTAATACCTTGGTTAGATCCACCTGGTGCCCTCTCATTCAACTGGAACTTTAATAACACCTTGGCAATTCTCTTGTCAGCTATTCTTGGCTTCTTGCTTCAGTGGTCAGGTGCTCTAGCACTTGGGGCTACATCTGCTGTTACACATGTTGTTCTTGGTCAATTCAAAACATGCGTCATTCTTCTAGGAAACTACTACCTCTTTAGTTCGAATCCAGGCAAGACGAGTATTTCTGGGGCTTTCACAGCAATTGCTGGAATGTCTATTTACACCTACCTTAATTTGAAGCAGCAATCAAGCAAAGCTCCACGACTAGCCTCTTCTTTGCCAAAATCAAAACTGAGTAAAGAAAACGGCAGCATCCATGAAGGAAACTTTGGTTCCGAATCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

378

Amino Acids

41.25

Weight (kDa)

9.85

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57100 AT5G57100 AT5G57100 AT5G57100
fragaria_vesca	FvH4_4g06880 FvH4_4g06880
malus_domestica	MD13G1241400.v1.1 MD16G1244800.v1.1
prunus_persica	Prupe.1G071900_v2.0.a1 Prupe.1G071900_v2.0.a1
pyrus_communis	pycom13g21170 pycom16g20600
rosa_chinensis	RchiOBHm_Chr4g0398791
rosa_laevigata	RLG00000009322
rosa_multiflora	Rmu_sc0000458.1_g000010
rosa_roxburghii	Rroxscaffold_5G00343720
rosa_rugosa	Rorug04G0011500 Rorug04G0011600 Rorug04G0011700 Rorug04G0011800
rosa_samantha	Rh4AG089400 Rh4BG086800 Rh4CG097500 Rh4DG081200
rosa_wichuraiana	Rw4G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	764
AciI	CCGC	3 cut(s)	94, 352, 461
AclWI	GGATC	1 cut(s)	749
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	3 cut(s)	7, 113, 488
AcuI	CTGAAG	2 cut(s)	147, 821
AdeI	CACNNNGTG	1 cut(s)	764
AfaI	GTAC	2 cut(s)	425, 500
AflIII	ACRYGT	1 cut(s)	883
AgsI	TTSAA	5 cut(s)	184, 421, 778, 904, 1024
AjnI	CCWGG	2 cut(s)	760, 952
AjuI	GAANNNNNNNTTGG	2 cut(s)	1098, 1130
AluBI	AGCT	4 cut(s)	80, 288, 818, 1043
AluI	AGCT	4 cut(s)	80, 288, 818, 1043
Alw21I	GWGCWC	3 cut(s)	82, 231, 853
AlwI	GGATC	1 cut(s)	749
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	4 cut(s)	160, 300, 387, 400
ApeKI	GCWGC	3 cut(s)	98, 1027, 1095
ApoI	RAATTY	3 cut(s)	7, 113, 488
ArsI	GACNNNNNNTTYG	2 cut(s)	897, 929
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	77, 709
AsuII	TTCGAA	1 cut(s)	947
BaeGI	GKGCMC	1 cut(s)	769
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BanI	GGYRCC	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	82
BbsI	GAAGAC	2 cut(s)	93, 710
Bbv12I	GWGCWC	3 cut(s)	82, 231, 853
BbvI	GCAGC	3 cut(s)	110, 1039, 1107
BccI	CCATC	3 cut(s)	292, 478, 597
BceAI	ACGGC	3 cut(s)	287, 545, 1108
BciT130I	CCWGG	2 cut(s)	762, 954
BciVI	GTATCC	1 cut(s)	556
BfaI	CTAG	6 cut(s)	83, 530, 657, 854, 923, 1052
BfmI	CTRYAG	1 cut(s)	567
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	3 cut(s)	99, 1028, 1096
BlsI	GCNGC	3 cut(s)	100, 1029, 1097
Bme1390I	CCNGG	2 cut(s)	762, 954
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	3 cut(s)	245, 766, 1120
BmrFI	CCNGG	2 cut(s)	762, 954
BmsI	GCATC	2 cut(s)	49, 1107
BpiI	GAAGAC	2 cut(s)	93, 710
Bpu14I	TTCGAA	1 cut(s)	947
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	5 cut(s)	522, 561, 687, 746, 798
Bse1I	ACTGG	3 cut(s)	247, 403, 785
BseBI	CCWGG	2 cut(s)	762, 954
BseDI	CCNNGG	5 cut(s)	522, 561, 687, 746, 798
BseGI	GGATG	1 cut(s)	1098
BseMII	CTCAG	1 cut(s)	1070
BseNI	ACTGG	3 cut(s)	247, 403, 785
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	3 cut(s)	110, 1039, 1107
BsgI	GTGCAG	1 cut(s)	654
BshFI	GGCC	4 cut(s)	162, 302, 389, 402
BshNI	GGYRCC	1 cut(s)	764
BsiHKAI	GWGCWC	3 cut(s)	82, 231, 853
BslFI	GGGAC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	4 cut(s)	162, 302, 389, 402
Bsp119I	TTCGAA	1 cut(s)	947
Bsp1286I	GDGCHC	4 cut(s)	82, 231, 769, 853
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	2 cut(s)	577, 754
BspACI	CCGC	3 cut(s)	94, 352, 461
BspANI	GGCC	4 cut(s)	162, 302, 389, 402
BspCNI	CTCAG	1 cut(s)	1071
BspLI	GGNNCC	3 cut(s)	245, 766, 1120
BspPI	GGATC	1 cut(s)	749
BspQI	GCTCTTC	1 cut(s)	70
BspT104I	TTCGAA	1 cut(s)	947
BspT107I	GGYRCC	1 cut(s)	764
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	3 cut(s)	247, 403, 785
BssECI	CCNNGG	5 cut(s)	522, 561, 687, 746, 798
BssMI	GATC	2 cut(s)	577, 754
BssT1I	CCWWGG	4 cut(s)	522, 687, 746, 798
Bst2UI	CCWGG	2 cut(s)	762, 954
Bst4CI	ACNGT	2 cut(s)	541, 571
Bst6I	CTCTTC	2 cut(s)	70, 1063
BstAUI	TGTACA	1 cut(s)	498
BstBI	TTCGAA	1 cut(s)	947
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	13, 453, 1079
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	1 cut(s)	1098
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	580, 757
BstMBI	GATC	2 cut(s)	577, 754
BstMWI	GCNNNNNNNGC	4 cut(s)	608, 863, 872, 983
BstNI	CCWGG	2 cut(s)	762, 954
BstNSI	RCATGY	3 cut(s)	336, 887, 912
BstSCI	CCNGG	2 cut(s)	760, 952
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	769
BstV1I	GCAGC	3 cut(s)	110, 1039, 1107
BstV2I	GAAGAC	2 cut(s)	93, 710
BstX2I	RGATCY	1 cut(s)	754
BstXI	CCANNNNNNTGG	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	754
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	4 cut(s)	162, 302, 389, 402
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	1098
BtsIMutI	CAGTG	1 cut(s)	845
Cac8I	GCNNGC	1 cut(s)	96
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	2 cut(s)	128, 901
CsiI	ACCWGGT	1 cut(s)	760
Csp6I	GTAC	2 cut(s)	424, 499
CviAII	CATG	5 cut(s)	333, 618, 884, 909, 1103
CviQI	GTAC	2 cut(s)	424, 499
DdeI	CTNAG	3 cut(s)	13, 453, 1079
DpnI	GATC	2 cut(s)	579, 756
DpnII	GATC	2 cut(s)	577, 754
DraIII	CACNNNGTG	1 cut(s)	764
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	70, 1063
EarI	CTCTTC	2 cut(s)	70, 1063
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	4 cut(s)	522, 687, 746, 798
Eco24I	GRGCYC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	147, 821
EcoICRI	GAGCTC	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	760, 952
EcoT14I	CCWWGG	4 cut(s)	522, 687, 746, 798
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	4 cut(s)	522, 687, 746, 798
FaeI	CATG	5 cut(s)	336, 621, 887, 912, 1106
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	5 cut(s)	332, 617, 883, 908, 1102
FauI	CCCGC	2 cut(s)	87, 359
Fnu4HI	GCNGC	3 cut(s)	99, 1028, 1096
FokI	GGATG	1 cut(s)	1085
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	3 cut(s)	99, 1028, 1096
FspBI	CTAG	6 cut(s)	83, 530, 657, 854, 923, 1052
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	3 cut(s)	99, 1028, 1096
HaeIII	GGCC	4 cut(s)	162, 302, 389, 402
HgaI	GACGC	2 cut(s)	128, 901
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	5 cut(s)	336, 621, 887, 912, 1106
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HincII	GTYRAC	2 cut(s)	143, 640
HindII	GTYRAC	2 cut(s)	143, 640
HinfI	GANTC	4 cut(s)	37, 646, 949, 1124
HphI	GGTGA	2 cut(s)	77, 709
Hpy166II	GTNNAC	3 cut(s)	143, 217, 640
Hpy188I	TCNGA	3 cut(s)	127, 447, 1123
Hpy188III	TCNNGA	2 cut(s)	83, 214
Hpy8I	GTNNAC	3 cut(s)	143, 217, 640
HpyAV	CCTTC	2 cut(s)	122, 1100
HpyCH4III	ACNGT	2 cut(s)	541, 571
HpyCH4IV	ACGT	2 cut(s)	27, 362
HpyCH4V	TGCA	6 cut(s)	134, 332, 583, 635, 664, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	608, 863, 872, 983
HpyF3I	CTNAG	3 cut(s)	13, 453, 1079
HpySE526I	ACGT	2 cut(s)	27, 362
Hsp92II	CATG	5 cut(s)	336, 621, 887, 912, 1106
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	577, 754
LguI	GCTCTTC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	1048
Lsp1109I	GCAGC	3 cut(s)	110, 1039, 1107
LweI	GCATC	2 cut(s)	49, 1107
MabI	ACCWGGT	1 cut(s)	760
MaeI	CTAG	6 cut(s)	83, 530, 657, 854, 923, 1052
MaeII	ACGT	2 cut(s)	27, 362
MaeIII	GTNAC	3 cut(s)	463, 571, 877
MalI	GATC	2 cut(s)	579, 756
MboI	GATC	2 cut(s)	577, 754
MboII	GAAGA	6 cut(s)	46, 87, 98, 715, 911, 1050
MfeI	CAATTG	2 cut(s)	474, 987
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	4 cut(s)	82, 231, 769, 853
MnlI	CCTC	5 cut(s)	65, 335, 779, 947, 1066
MseI	TTAA	6 cut(s)	5, 30, 108, 695, 789, 1017
MslI	CAYNNNNRTG	1 cut(s)	616
MspR9I	CCNGG	2 cut(s)	762, 954
MunI	CAATTG	2 cut(s)	474, 987
MvaI	CCWGG	2 cut(s)	762, 954
MwoI	GCNNNNNNNGC	4 cut(s)	608, 863, 872, 983
NdeII	GATC	2 cut(s)	577, 754
NlaIII	CATG	5 cut(s)	336, 621, 887, 912, 1106
NlaIV	GGNNCC	3 cut(s)	245, 766, 1120
NspI	RCATGY	3 cut(s)	336, 887, 912
NspV	TTCGAA	1 cut(s)	947
PciI	ACATGT	1 cut(s)	883
PciSI	GCTCTTC	1 cut(s)	70
PfeI	GAWTC	4 cut(s)	37, 646, 949, 1124
PkrI	GCNGC	3 cut(s)	100, 1029, 1097
PscI	ACATGT	1 cut(s)	883
Psp124BI	GAGCTC	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	760, 952
PspGI	CCWGG	2 cut(s)	760, 952
PspN4I	GGNNCC	3 cut(s)	245, 766, 1120
PspPI	GGNCC	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	2 cut(s)	425, 500
RsaNI	GTAC	2 cut(s)	424, 499
RseI	CAYNNNNRTG	1 cut(s)	616
SacI	GAGCTC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	70
SaqAI	TTAA	6 cut(s)	5, 30, 108, 695, 789, 1017
SatI	GCNGC	3 cut(s)	99, 1028, 1096
Sau3AI	GATC	2 cut(s)	577, 754
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	762, 954
SduI	GDGCHC	4 cut(s)	82, 231, 769, 853
SexAI	ACCWGGT	1 cut(s)	760
SfaNI	GCATC	2 cut(s)	49, 1107
SfcI	CTRYAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	947
SmiMI	CAYNNNNRTG	1 cut(s)	616
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SsiI	CCGC	3 cut(s)	94, 352, 461
SspMI	CTAG	6 cut(s)	83, 530, 657, 854, 923, 1052
SstI	GAGCTC	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	760, 952
StyI	CCWWGG	4 cut(s)	522, 687, 746, 798
TaaI	ACNGT	2 cut(s)	541, 571
TaiI	ACGT	2 cut(s)	30, 365
TaqI	TCGA	2 cut(s)	347, 947
TatI	WGTACW	2 cut(s)	423, 498
TfiI	GAWTC	4 cut(s)	37, 646, 949, 1124
Tru1I	TTAA	6 cut(s)	5, 30, 108, 695, 789, 1017
Tru9I	TTAA	6 cut(s)	5, 30, 108, 695, 789, 1017
TscAI	CASTG	1 cut(s)	845
TseI	GCWGC	3 cut(s)	98, 1027, 1095
TspDTI	ATGAA	2 cut(s)	126, 1119
TspRI	CASTG	1 cut(s)	845
XapI	RAATTY	3 cut(s)	7, 113, 488
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	3 cut(s)	336, 887, 912
XspI	CTAG	6 cut(s)	83, 530, 657, 854, 923, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.