Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000458.1

Orthogroup ID

OG0007221

Physical Location & Seq

Genomic Coordinates Reverse (-)

32652 .. 37145

Gene Structure 4494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000458.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atgttaaatttcttagggaggaaagatgtcaggaagattctcaaacgcaaggatagtgatgctggtgaaagaggaaaagctctcgaagacttgcggtcttctctattcaatgtgtttcgctcacctgaaggtgcaaaacgtcaacagcaacaactatgtggccctgcaactgctcttacattcaattttatagttgctgttggtataattttcatgaacaaattggtgctcaaagttgttgggttccagtttcctatatttctcacttttatccactacgttgtaagctggttattgatggccattctgaaatctctgtctatcctccctgcatctccctcaaaatcagctcgcttatctacgttatttactcttggttttgttatggctctatccaccggccttgctaatgttagcttaaagtacaatagtgtgggcttttatcagatgtctaagattgcggttaccccatcaattgttctcgcagaatttttaatctacaataagagagtgtctttttccaaggtcctaacacttgcagtagtatcttttggtgttgctgtggctactgtaacagatctgcaattccatctctttggtgcttgtatagcattagcatggataatacctagtgcaattaacaagattctttggtctagtctgcaacagcaggagaactggacagcgttggcgttaatgtggaagacaacaccagttactttattttttctggttgcactgataccctggttggatccacctggtgctctctcctttaattggagttttaataacacctcggcaattctcatgtcagctattctcggcttcttacttcagtggtctggtgctctagctcttggggctacatctgctgttacacatgttgttcttggtcaattcaaaacatgtgtcattcttcttggaaactactacctgtttagttccaatccaggcaagaccagtatttgtggggccttcacagcaattgccggaatgtccatttacacttacctaaatttgaggcagcaatcaagcagaacatccccacgacaagtctctacattaccaaaatctaaactgagtaaagaaaatggcaaccatgatggaaattacggggccgaatctgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

377

Amino Acids

41.29

Weight (kDa)

9.96

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57100 AT5G57100 AT5G57100 AT5G57100
fragaria_vesca	FvH4_4g06880 FvH4_4g06880
malus_domestica	MD13G1241400.v1.1 MD16G1244800.v1.1
prunus_persica	Prupe.1G071900_v2.0.a1 Prupe.1G071900_v2.0.a1
pyrus_communis	pycom13g21170 pycom16g20600
rosa_chinensis	RchiOBHm_Chr4g0398791
rosa_laevigata	RLG00000009322
rosa_multiflora	Rmu_sc0000458.1_g000010
rosa_roxburghii	Rroxscaffold_5G00343720
rosa_rugosa	Rorug04G0011500 Rorug04G0011600 Rorug04G0011700 Rorug04G0011800
rosa_samantha	Rh4AG089400 Rh4BG086800 Rh4CG097500 Rh4DG081200
rosa_wichuraiana	Rw4G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	94, 461
AclWI	GGATC	2 cut(s)	749, 762
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	3 cut(s)	7, 488, 1018
AcuI	CTGAAG	2 cut(s)	147, 821
AdeI	CACNNNGTG	1 cut(s)	764
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	780
AflIII	ACRYGT	2 cut(s)	883, 908
AgsI	TTSAA	3 cut(s)	109, 184, 904
AhdI	GACNNNNNGTC	1 cut(s)	94
AjnI	CCWGG	3 cut(s)	746, 760, 952
AluBI	AGCT	6 cut(s)	80, 288, 350, 417, 818, 857
AluI	AGCT	6 cut(s)	80, 288, 350, 417, 818, 857
Alw21I	GWGCWC	3 cut(s)	231, 769, 853
Alw26I	GTCTC	1 cut(s)	1063
AlwI	GGATC	2 cut(s)	749, 762
AoxI	GGCC	5 cut(s)	160, 300, 400, 975, 1119
ApeKI	GCWGC	1 cut(s)	1027
ApoI	RAATTY	3 cut(s)	7, 488, 1018
ArsI	GACNNNNNNTTYG	2 cut(s)	897, 929
AspS9I	GGNCC	4 cut(s)	161, 526, 975, 1119
AsuHPI	GGTGA	2 cut(s)	77, 114
AvaII	GGWCC	1 cut(s)	526
BaeI	ACNNNNGTAYC	2 cut(s)	734, 767
BalI	TGGCCA	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	754
BbsI	GAAGAC	3 cut(s)	90, 93, 710
Bbv12I	GWGCWC	3 cut(s)	231, 769, 853
BbvI	GCAGC	1 cut(s)	1039
BccI	CCATC	4 cut(s)	292, 478, 597, 1100
BciT130I	CCWGG	3 cut(s)	748, 762, 954
BcoDI	GTCTC	1 cut(s)	1063
BfaI	CTAG	3 cut(s)	630, 657, 854
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	1 cut(s)	1028
BlsI	GCNGC	1 cut(s)	1029
Bme1390I	CCNGG	3 cut(s)	748, 762, 954
Bme18I	GGWCC	1 cut(s)	526
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmgT120I	GGNCC	4 cut(s)	161, 526, 975, 1119
BmiI	GGNNCC	4 cut(s)	245, 756, 976, 1120
BmrFI	CCNGG	3 cut(s)	748, 762, 954
BmsI	GCATC	2 cut(s)	49, 341
BpiI	GAAGAC	3 cut(s)	90, 93, 710
BsaJI	CCNNGG	3 cut(s)	522, 746, 798
Bsc4I	CCNNNNNNNGG	1 cut(s)	780
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	4 cut(s)	247, 683, 713, 963
BseBI	CCWGG	3 cut(s)	748, 762, 954
BseDI	CCNNGG	3 cut(s)	522, 746, 798
BseGI	GGATG	1 cut(s)	1043
BseLI	CCNNNNNNNGG	1 cut(s)	780
BseMII	CTCAG	1 cut(s)	1073
BseNI	ACTGG	4 cut(s)	247, 683, 713, 963
BseXI	GCAGC	1 cut(s)	1039
BshFI	GGCC	5 cut(s)	162, 302, 402, 977, 1121
BsiHKAI	GWGCWC	3 cut(s)	231, 769, 853
BsiSI	CCGG	2 cut(s)	399, 993
BslI	CCNNNNNNNGG	1 cut(s)	780
BsmAI	GTCTC	1 cut(s)	1063
BsnI	GGCC	5 cut(s)	162, 302, 402, 977, 1121
Bsp1286I	GDGCHC	3 cut(s)	231, 769, 853
Bsp143I	GATC	2 cut(s)	577, 754
BspACI	CCGC	2 cut(s)	94, 461
BspANI	GGCC	5 cut(s)	162, 302, 402, 977, 1121
BspCNI	CTCAG	1 cut(s)	1074
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	4 cut(s)	245, 756, 976, 1120
BspPI	GGATC	2 cut(s)	749, 762
BsrFI	RCCGGY	1 cut(s)	398
BsrI	ACTGG	4 cut(s)	247, 683, 713, 963
BssAI	RCCGGY	1 cut(s)	398
BssECI	CCNNGG	3 cut(s)	522, 746, 798
BssMI	GATC	2 cut(s)	577, 754
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	3 cut(s)	748, 762, 954
Bst4CI	ACNGT	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	3 cut(s)	13, 453, 1082
BstEII	GGTNACC	1 cut(s)	463
BstF5I	GGATG	1 cut(s)	1043
BstKTI	GATC	2 cut(s)	580, 757
BstMAI	GTCTC	1 cut(s)	1063
BstMBI	GATC	2 cut(s)	577, 754
BstMWI	GCNNNNNNNGC	4 cut(s)	608, 863, 872, 983
BstNI	CCWGG	3 cut(s)	748, 762, 954
BstNSI	RCATGY	2 cut(s)	887, 912
BstPI	GGTNACC	1 cut(s)	463
BstSCI	CCNGG	3 cut(s)	746, 760, 952
BstV1I	GCAGC	1 cut(s)	1039
BstV2I	GAAGAC	3 cut(s)	90, 93, 710
BstX2I	RGATCY	2 cut(s)	577, 754
BstXI	CCANNNNNNTGG	1 cut(s)	596
BstYI	RGATCY	2 cut(s)	577, 754
BsuRI	GGCC	5 cut(s)	162, 302, 402, 977, 1121
BtsCI	GGATG	1 cut(s)	1043
BtsIMutI	CAGTG	2 cut(s)	737, 845
Cac8I	GCNNGC	1 cut(s)	352
CciI	TCATGA	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	4 cut(s)	161, 526, 975, 1119
CsiI	ACCWGGT	1 cut(s)	760
Csp6I	GTAC	1 cut(s)	424
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	6 cut(s)	214, 618, 811, 884, 909, 1103
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	3 cut(s)	13, 453, 1082
DpnI	GATC	2 cut(s)	579, 756
DpnII	GATC	2 cut(s)	577, 754
DraIII	CACNNNGTG	1 cut(s)	764
DriI	GACNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	300
Eam1105I	GACNNNNNGTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	526
Eco57I	CTGAAG	2 cut(s)	147, 821
Eco91I	GGTNACC	1 cut(s)	463
EcoO109I	RGGNCCY	2 cut(s)	526, 975
EcoO65I	GGTNACC	1 cut(s)	463
EcoRII	CCWGG	3 cut(s)	746, 760, 952
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	6 cut(s)	217, 621, 814, 887, 912, 1106
FatI	CATG	6 cut(s)	213, 617, 810, 883, 908, 1102
Fnu4HI	GCNGC	1 cut(s)	1028
FokI	GGATG	1 cut(s)	1030
Fsp4HI	GCNGC	1 cut(s)	1028
FspBI	CTAG	3 cut(s)	630, 657, 854
GluI	GCNGC	1 cut(s)	1028
HaeIII	GGCC	5 cut(s)	162, 302, 402, 977, 1121
HapII	CCGG	2 cut(s)	399, 993
Hin1II	CATG	6 cut(s)	217, 621, 814, 887, 912, 1106
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HinfI	GANTC	3 cut(s)	37, 646, 1124
HpaII	CCGG	2 cut(s)	399, 993
HphI	GGTGA	2 cut(s)	77, 114
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	309, 447
Hpy188III	TCNNGA	3 cut(s)	31, 83, 214
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	122, 988
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4IV	ACGT	3 cut(s)	139, 279, 362
HpyCH4V	TGCA	8 cut(s)	134, 167, 332, 539, 583, 635, 664, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	608, 863, 872, 983
HpyF3I	CTNAG	3 cut(s)	13, 453, 1082
HpySE526I	ACGT	3 cut(s)	139, 279, 362
Hsp92II	CATG	6 cut(s)	217, 621, 814, 887, 912, 1106
Kzo9I	GATC	2 cut(s)	577, 754
Lsp1109I	GCAGC	1 cut(s)	1039
LweI	GCATC	2 cut(s)	49, 341
MabI	ACCWGGT	1 cut(s)	760
MaeI	CTAG	3 cut(s)	630, 657, 854
MaeII	ACGT	3 cut(s)	139, 279, 362
MaeIII	GTNAC	4 cut(s)	463, 571, 715, 877
MalI	GATC	2 cut(s)	579, 756
MboI	GATC	2 cut(s)	577, 754
MboII	GAAGA	5 cut(s)	46, 90, 98, 715, 911
MfeI	CAATTG	2 cut(s)	474, 987
MflI	RGATCY	2 cut(s)	577, 754
MhlI	GDGCHC	3 cut(s)	231, 769, 853
MlsI	TGGCCA	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	732
MnlI	CCTC	6 cut(s)	12, 65, 335, 349, 808, 1017
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	7 cut(s)	5, 419, 494, 639, 695, 777, 789
MslI	CAYNNNNRTG	1 cut(s)	616
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	2 cut(s)	399, 993
MspR9I	CCNGG	3 cut(s)	748, 762, 954
MunI	CAATTG	2 cut(s)	474, 987
MvaI	CCWGG	3 cut(s)	748, 762, 954
MwoI	GCNNNNNNNGC	4 cut(s)	608, 863, 872, 983
NdeII	GATC	2 cut(s)	577, 754
NlaIII	CATG	6 cut(s)	217, 621, 814, 887, 912, 1106
NlaIV	GGNNCC	4 cut(s)	245, 756, 976, 1120
NmeAIII	GCCGAG	2 cut(s)	779, 804
NspI	RCATGY	2 cut(s)	887, 912
PagI	TCATGA	1 cut(s)	213
PciI	ACATGT	2 cut(s)	883, 908
PfeI	GAWTC	3 cut(s)	37, 646, 1124
PkrI	GCNGC	1 cut(s)	1029
PpuMI	RGGWCCY	1 cut(s)	526
PscI	ACATGT	2 cut(s)	883, 908
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	3 cut(s)	746, 760, 952
PspEI	GGTNACC	1 cut(s)	463
PspGI	CCWGG	3 cut(s)	746, 760, 952
PspN4I	GGNNCC	4 cut(s)	245, 756, 976, 1120
PspPI	GGNCC	4 cut(s)	161, 526, 975, 1119
PspPPI	RGGWCCY	1 cut(s)	526
PsuI	RGATCY	2 cut(s)	577, 754
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	616
SaqAI	TTAA	7 cut(s)	5, 419, 494, 639, 695, 777, 789
SatI	GCNGC	1 cut(s)	1028
Sau3AI	GATC	2 cut(s)	577, 754
Sau96I	GGNCC	4 cut(s)	161, 526, 975, 1119
ScrFI	CCNGG	3 cut(s)	748, 762, 954
SduI	GDGCHC	3 cut(s)	231, 769, 853
SexAI	ACCWGGT	1 cut(s)	760
SfaNI	GCATC	2 cut(s)	49, 341
SinI	GGWCC	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	616
SsiI	CCGC	2 cut(s)	94, 461
SspMI	CTAG	3 cut(s)	630, 657, 854
StyD4I	CCNGG	3 cut(s)	746, 760, 952
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	571
TaiI	ACGT	3 cut(s)	142, 282, 365
TaqI	TCGA	1 cut(s)	84
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	3 cut(s)	37, 646, 1124
Tru1I	TTAA	7 cut(s)	5, 419, 494, 639, 695, 777, 789
Tru9I	TTAA	7 cut(s)	5, 419, 494, 639, 695, 777, 789
TscAI	CASTG	2 cut(s)	744, 845
TseI	GCWGC	1 cut(s)	1027
TspDTI	ATGAA	2 cut(s)	202, 230
TspRI	CASTG	2 cut(s)	744, 845
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	3 cut(s)	7, 488, 1018
XceI	RCATGY	2 cut(s)	887, 912
XspI	CTAG	3 cut(s)	630, 657, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.