AT5G57200

clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012345
Physical Location & Seq
Forward (+)
23177525 .. 23180853
3329 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57200.1

Sequence Viewer

Length: 1776 bp
ATGGGAACGTTCACGAGCTTTCGAAAAGCCTATGGAGCGCTCAAAGATACAACCACCGTTGGTCTCGCTAAGGTCAACAGCGAATTCAAGGATTTAGATATTGCGATCGTCAAAGCGACGAATCATGTTGAATCTCCACCAAAAGAACGTCATGTTCGTAAAATATTCTCGGCGACATCTGTGATACAACCACGAGCAGATGTAGCTTATTGCATTCATGCATTATCTAAAAGATTATCGAAAACTCGCAATTGGGTTGTTGCAATGAAAGTGTTAATAGTAATTCACAGAACATTAAGAGAAGGTGATCCAACATTTAGAGAAGAGCTTCTAAATTACTCACATAGAAGACATATACTCAGAATATCTAACTTCAAAGATGACACAAGTCCTCTTGCGTGGGATTGTTCTGCTTGGGTTAGAACATACGCGCTCTTTCTAGAAGAGCGGCTTGAATGTTATCGGGTTTTAAAGTATGACATCGAGGCAGAGCGTTTACCAAAAGCTTCAGGTGCAGCTTCAAAGACGCATAGAACAAGGATGTTGTCTGGTGAAGATTTGTTAGAACAGTTACCTGCATTGCAACAGCTTCTTTACCGGCTTATCGGATGTCAGCCTGAAGGAGCAGCTTATAGCAACTATCTAATCCAATATGCTCTTGCATTGGTGCTTAAAGAAAGCTTCAAAATCTATTGTGCTATAAACGATGGAATCATTAATCTTGTAGACATGTTCTTTGAGATGTCAAGACATGATGCAGTTAAAGCTCTAAACATATACAAACGGGCTGGTCAACAGGCTGAAAATCTAGCTGAGTTTTATGATTACTGCAAAGGACTAGAGCTTGCTAGAAACTTTCAGTTCCCAACTTTAAGACAGCCTCCTCCTTCGTTTCTGGCGACAATGGAAGAGTACATTAAAGAAGCGCCTCAAAGTGGTTCTGTACAGAAAAAGCTGGAGTATCAGGAAAAAGAGGAAGAAGAACAAGAACAAGAAGAAGAACAGCCTGAAGAACCAGCAGAAGAAGAAAACCAAAACGAAAACACCGAAAATGATCAGCCGCTTATCGAAGAAGAGGAAGAAGAGCCTAAAGAGGAGATAGAAGTGGAAGAAGCTAAACCTTCACCACTGATAGACACTGATGACTTACTAGGTCTGCATGAAATAAACCCGAAAGCCGCAGAGATAGAGCAAAACAACGCATTCTCTCTCGCGATATATCCACCAGGACATGAAACTTCAGCCCCATCTAATAGTCTAAGCTTAATAGAAGCAGGGGGAAGTGGTTGGGAACTTGCACTAGTCACACCACAGAACAACAACAACAATAACAACAATCCTCGTCCCGTTATAGCAACAAAACTCGGCGGAGGATTCGACAATCTTCTACTAGACAGTCTTTACGAAGACGATACAGCAAGAAGACAGATTCAGTTAACAAACGCCGGTTACGGATTTGGAGCCACGGCTATACCCGGAGCACTAGCTTCATCGAACCCAAACCCGTTCGGGGTGCAACAAGATCCTTTCGCAATGTCAAACAACATGGCTCCACCAACCAATGTTCAAATGGCAATGCAACAACAACAAATGATGATGATGAATAACCAAAGTCCATATAATAACAACTATTCACCATATCATCATCATCAATTCTCACCAAATCCTTCAACTTCTTCATCTCCTAACCCTTTTGGTGACCCTTTCCTTGCTCTCCCAGCTCCTCCTTCATCTACTACACAGCAGCAATACAGTCCTAATCATATGCTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

591

Amino Acids

66.61

Weight (kDa)

4.99

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 31 - 308 8.3e-99 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25940 AT5G57200
fragaria_vesca FvH4_4g07320
malus_domestica MD13G1242200.v1.1 MD16G1249100.v1.1
prunus_persica Prupe.1G075800_v2.0.a1 Prupe.1G076000_v2.0.a1
pyrus_communis pycom13g21390 pycom16g20850
rosa_chinensis RchiOBHm_Chr4g0399681
rosa_laevigata RLG00000009247
rosa_multiflora Rmu_co8405013.1_g000001
rosa_roxburghii Rroxscaffold_5G00344590
rosa_rugosa Rorug04G0018100
rosa_samantha Rh4AG095900 Rh4BG093400 Rh4CG104500 Rh4DG088500
rosa_wichuraiana Rw4G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AccBSI CCGCTC 1 cut(s) 448
AccI GTMKAC 1 cut(s) 726
AccII CGCG 2 cut(s) 431, 1214
AciI CCGC 4 cut(s) 448, 1061, 1179, 1368
AclI AACGTT 1 cut(s) 8
AclWI GGATC 2 cut(s) 302, 1517
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 4 cut(s) 492, 639, 1029, 1224
AfaI GTAC 2 cut(s) 914, 945
AfeI AGCGCT 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 935, 1510
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 8 cut(s) 88, 131, 376, 455, 522, 685, 1568, 1671
AhlI ACTAGT 1 cut(s) 1300
AjnI CCWGG 1 cut(s) 1225
Alw21I GWGCWC 1 cut(s) 1483
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 2 cut(s) 302, 1517
Aor51HI AGCGCT 1 cut(s) 39
ApeKI GCWGC 3 cut(s) 515, 626, 1744
ApoI RAATTY 1 cut(s) 83
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
AseI ATTAAT 1 cut(s) 717
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 3 cut(s) 40, 433, 928
AsuC2I CCSGG 1 cut(s) 1476
AsuHPI GGTGA 6 cut(s) 317, 563, 1116, 1626, 1650, 1709
AsuII TTCGAA 1 cut(s) 22
BauI CACGAG 2 cut(s) 13, 192
BbsI GAAGAC 3 cut(s) 355, 1413, 1429
Bbv12I GWGCWC 1 cut(s) 1483
BbvI GCAGC 3 cut(s) 527, 638, 1756
BccI CCATC 2 cut(s) 701, 1255
BceAI ACGGC 1 cut(s) 1482
BciT130I CCWGG 1 cut(s) 1227
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 1 cut(s) 1476
BcoDI GTCTC 1 cut(s) 68
BcuI ACTAGT 1 cut(s) 1300
BfaI CTAG 9 cut(s) 440, 809, 839, 849, 1151, 1301, 1391, 1484, 1774
BfoI RGCGCY 2 cut(s) 41, 929
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 6 cut(s) 449, 516, 627, 1061, 1179, 1745
BlsI GCNGC 6 cut(s) 450, 517, 628, 1062, 1180, 1746
Bme1390I CCNGG 2 cut(s) 1227, 1476
BmiI GGNNCC 2 cut(s) 1462, 1551
BmrFI CCNGG 2 cut(s) 1227, 1476
BmsI GCATC 1 cut(s) 745
BoxI GACNNNNGTC 1 cut(s) 387
BpiI GAAGAC 3 cut(s) 355, 1413, 1429
BpmI CTGGAG 1 cut(s) 977
Bpu10I CCTNAGC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 22
BpuMI CCSGG 1 cut(s) 1476
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 1464
Bsc4I CCNNNNNNNGG 2 cut(s) 935, 1510
Bse118I RCCGGY 2 cut(s) 597, 1445
Bse3DI GCAATG 4 cut(s) 270, 578, 1539, 1581
BseBI CCWGG 1 cut(s) 1227
BseDI CCNNGG 1 cut(s) 1464
BseGI GGATG 2 cut(s) 546, 614
BseLI CCNNNNNNNGG 2 cut(s) 935, 1510
BseMI GCAATG 4 cut(s) 270, 578, 1539, 1581
BseMII CTCAG 2 cut(s) 373, 804
BseRI GAGGAG 3 cut(s) 873, 1109, 1713
BseXI GCAGC 3 cut(s) 527, 638, 1756
BseYI CCCAGC 1 cut(s) 1717
BsgI GTGCAG 1 cut(s) 534
Bsh1236I CGCG 2 cut(s) 431, 1214
Bsh1285I CGRYCG 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 1483
BsiSI CCGG 3 cut(s) 598, 1446, 1476
BslFI GGGAC 1 cut(s) 1329
BslI CCNNNNNNNGG 2 cut(s) 935, 1510
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 1329
BsmI GAATGC 2 cut(s) 213, 1202
Bso31I GGTCTC 1 cut(s) 68
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 1483
Bsp1407I TGTACA 1 cut(s) 943
Bsp143I GATC 4 cut(s) 105, 307, 1054, 1522
Bsp68I TCGCGA 1 cut(s) 1214
BspACI CCGC 4 cut(s) 448, 1061, 1179, 1368
BspCNI CTCAG 2 cut(s) 372, 805
BspFNI CGCG 2 cut(s) 431, 1214
BspLI GGNNCC 2 cut(s) 1462, 1551
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 2 cut(s) 302, 1517
BspQI GCTCTTC 3 cut(s) 318, 438, 1077
BspT104I TTCGAA 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 448
BsrDI GCAATG 4 cut(s) 270, 578, 1539, 1581
BsrFI RCCGGY 2 cut(s) 597, 1445
BsrGI TGTACA 1 cut(s) 943
BssAI RCCGGY 2 cut(s) 597, 1445
BssECI CCNNGG 1 cut(s) 1464
BssMI GATC 4 cut(s) 105, 307, 1054, 1522
BssSI CACGAG 2 cut(s) 13, 192
Bst2BI CACGAG 2 cut(s) 13, 192
Bst2UI CCWGG 1 cut(s) 1227
Bst4CI ACNGT 4 cut(s) 58, 570, 1397, 1754
Bst6I CTCTTC 5 cut(s) 318, 438, 903, 1068, 1077
BstAUI TGTACA 1 cut(s) 943
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 846
BstDEI CTNAG 4 cut(s) 69, 359, 813, 1259
BstDSI CCRYGG 1 cut(s) 1464
BstEII GGTNACC 1 cut(s) 1697
BstF5I GGATG 2 cut(s) 546, 614
BstFNI CGCG 2 cut(s) 431, 1214
BstH2I RGCGCY 2 cut(s) 41, 929
BstHHI GCGC 3 cut(s) 40, 433, 928
BstKTI GATC 4 cut(s) 108, 310, 1057, 1525
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 4 cut(s) 105, 307, 1054, 1522
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 5 cut(s) 35, 203, 512, 764, 1718
BstNI CCWGG 1 cut(s) 1227
BstNSI RCATGY 1 cut(s) 733
BstPAI GACNNNNGTC 1 cut(s) 387
BstPI GGTNACC 1 cut(s) 1697
BstSCI CCNGG 2 cut(s) 1225, 1474
BstUI CGCG 2 cut(s) 431, 1214
BstV1I GCAGC 3 cut(s) 527, 638, 1756
BstV2I GAAGAC 3 cut(s) 355, 1413, 1429
BstX2I RGATCY 1 cut(s) 1522
BstYI RGATCY 1 cut(s) 1522
BtgI CCRYGG 1 cut(s) 1464
BtsCI GGATG 2 cut(s) 546, 614
BtsIMutI CAGTG 2 cut(s) 1127, 1137
BtuMI TCGCGA 1 cut(s) 1214
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 1 cut(s) 846
CfoI GCGC 3 cut(s) 40, 433, 928
Cfr10I RCCGGY 2 cut(s) 597, 1445
CseI GACGC 1 cut(s) 535
Csp6I GTAC 2 cut(s) 913, 944
CviAII CATG 8 cut(s) 125, 152, 218, 730, 752, 1160, 1232, 1546
CviQI GTAC 2 cut(s) 913, 944
DdeI CTNAG 4 cut(s) 69, 359, 813, 1259
DpnI GATC 4 cut(s) 107, 309, 1056, 1524
DpnII GATC 4 cut(s) 105, 307, 1054, 1522
DraI TTTAAA 1 cut(s) 471
Eam1104I CTCTTC 5 cut(s) 318, 438, 903, 1068, 1077
EarI CTCTTC 5 cut(s) 318, 438, 903, 1068, 1077
EciI GGCGGA 1 cut(s) 1383
Eco31I GGTCTC 1 cut(s) 68
Eco47III AGCGCT 1 cut(s) 39
Eco57I CTGAAG 4 cut(s) 492, 639, 1029, 1224
Eco91I GGTNACC 1 cut(s) 1697
EcoO65I GGTNACC 1 cut(s) 1697
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 1225
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 8 cut(s) 128, 155, 221, 733, 755, 1163, 1235, 1549
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 1 cut(s) 1329
FatI CATG 8 cut(s) 124, 151, 217, 729, 751, 1159, 1231, 1545
FauNDI CATATG 1 cut(s) 1764
FbaI TGATCA 1 cut(s) 1054
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 6 cut(s) 449, 516, 627, 1061, 1179, 1745
FokI GGATG 2 cut(s) 553, 621
Fsp4HI GCNGC 6 cut(s) 449, 516, 627, 1061, 1179, 1745
FspBI CTAG 9 cut(s) 440, 809, 839, 849, 1151, 1301, 1391, 1484, 1774
GlaI GCGC 3 cut(s) 39, 432, 927
GluI GCNGC 6 cut(s) 449, 516, 627, 1061, 1179, 1745
GsaI CCCAGC 1 cut(s) 1721
GsuI CTGGAG 1 cut(s) 977
HaeII RGCGCY 2 cut(s) 41, 929
HapII CCGG 3 cut(s) 598, 1446, 1476
HgaI GACGC 1 cut(s) 535
HhaI GCGC 3 cut(s) 40, 433, 928
Hin1II CATG 8 cut(s) 128, 155, 221, 733, 755, 1163, 1235, 1549
Hin6I GCGC 3 cut(s) 38, 431, 926
HinP1I GCGC 3 cut(s) 38, 431, 926
HincII GTYRAC 3 cut(s) 76, 794, 1437
HindII GTYRAC 3 cut(s) 76, 794, 1437
HindIII AAGCTT 3 cut(s) 504, 679, 1261
HinfI GANTC 5 cut(s) 121, 131, 711, 1374, 1429
HpaI GTTAAC 1 cut(s) 1437
HpaII CCGG 3 cut(s) 598, 1446, 1476
HphI GGTGA 6 cut(s) 317, 563, 1116, 1626, 1650, 1709
Hpy166II GTNNAC 6 cut(s) 12, 76, 497, 727, 794, 1437
Hpy188I TCNGA 2 cut(s) 362, 608
Hpy188III TCNNGA 5 cut(s) 13, 440, 747, 965, 1213
Hpy8I GTNNAC 6 cut(s) 12, 76, 497, 727, 794, 1437
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 6 cut(s) 296, 614, 897, 1131, 1677, 1737
HpyCH4III ACNGT 4 cut(s) 58, 570, 1397, 1754
HpyCH4IV ACGT 2 cut(s) 8, 148
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 203, 512, 764, 1718
HpyF3I CTNAG 4 cut(s) 69, 359, 813, 1259
HpySE526I ACGT 2 cut(s) 8, 148
Hsp92II CATG 8 cut(s) 128, 155, 221, 733, 755, 1163, 1235, 1549
HspAI GCGC 3 cut(s) 38, 431, 926
Ksp22I TGATCA 1 cut(s) 1054
KspAI GTTAAC 1 cut(s) 1437
Kzo9I GATC 4 cut(s) 105, 307, 1054, 1522
LguI GCTCTTC 3 cut(s) 318, 438, 1077
LmnI GCTCC 6 cut(s) 35, 623, 1460, 1478, 1555, 1726
Lsp1109I GCAGC 3 cut(s) 527, 638, 1756
LweI GCATC 1 cut(s) 745
MaeI CTAG 9 cut(s) 440, 809, 839, 849, 1151, 1301, 1391, 1484, 1774
MaeII ACGT 2 cut(s) 8, 148
MaeIII GTNAC 4 cut(s) 570, 1303, 1448, 1697
MalI GATC 4 cut(s) 107, 309, 1056, 1524
MbiI CCGCTC 1 cut(s) 448
MboI GATC 4 cut(s) 105, 307, 1054, 1522
MfeI CAATTG 1 cut(s) 250
MflI RGATCY 1 cut(s) 1522
MhlI GDGCHC 1 cut(s) 1483
MluCI AATT 5 cut(s) 83, 250, 282, 334, 1652
MmeI TCCRAC 1 cut(s) 335
Mph1103I ATGCAT 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 327
MspI CCGG 3 cut(s) 598, 1446, 1476
MspR9I CCNGG 2 cut(s) 1227, 1476
MunI CAATTG 1 cut(s) 250
Mva1269I GAATGC 2 cut(s) 213, 1202
MvaI CCWGG 1 cut(s) 1227
MvnI CGCG 2 cut(s) 431, 1214
MwoI GCNNNNNNNGC 5 cut(s) 35, 203, 512, 764, 1718
NciI CCSGG 1 cut(s) 1476
NdeI CATATG 1 cut(s) 1764
NdeII GATC 4 cut(s) 105, 307, 1054, 1522
NlaIII CATG 8 cut(s) 128, 155, 221, 733, 755, 1163, 1235, 1549
NlaIV GGNNCC 2 cut(s) 1462, 1551
NmeAIII GCCGAG 2 cut(s) 149, 1344
NmuCI GTSAC 2 cut(s) 1303, 1697
NruI TCGCGA 1 cut(s) 1214
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 733
NspV TTCGAA 1 cut(s) 22
PciI ACATGT 1 cut(s) 729
PciSI GCTCTTC 3 cut(s) 318, 438, 1077
PcsI WCGNNNNNNNCGW 3 cut(s) 154, 896, 1044
PctI GAATGC 2 cut(s) 213, 1202
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 5 cut(s) 121, 131, 711, 1374, 1429
PkrI GCNGC 6 cut(s) 450, 517, 628, 1062, 1180, 1746
Ple19I CGATCG 1 cut(s) 108
PscI ACATGT 1 cut(s) 729
PshAI GACNNNNGTC 1 cut(s) 387
PshBI ATTAAT 1 cut(s) 717
Psp1406I AACGTT 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 1225
PspEI GGTNACC 1 cut(s) 1697
PspFI CCCAGC 1 cut(s) 1717
PspGI CCWGG 1 cut(s) 1225
PspN4I GGNNCC 2 cut(s) 1462, 1551
PsuI RGATCY 1 cut(s) 1522
PvuI CGATCG 1 cut(s) 108
RruI TCGCGA 1 cut(s) 1214
RsaI GTAC 2 cut(s) 914, 945
RsaNI GTAC 2 cut(s) 913, 944
SapI GCTCTTC 3 cut(s) 318, 438, 1077
SatI GCNGC 6 cut(s) 449, 516, 627, 1061, 1179, 1745
Sau3AI GATC 4 cut(s) 105, 307, 1054, 1522
ScrFI CCNGG 2 cut(s) 1227, 1476
SduI GDGCHC 1 cut(s) 1483
SfaNI GCATC 1 cut(s) 745
SfuI TTCGAA 1 cut(s) 22
SpeI ACTAGT 1 cut(s) 1300
Sse9I AATT 5 cut(s) 83, 250, 282, 334, 1652
SsiI CCGC 4 cut(s) 448, 1061, 1179, 1368
SspI AATATT 1 cut(s) 165
SspMI CTAG 9 cut(s) 440, 809, 839, 849, 1151, 1301, 1391, 1484, 1774
StyD4I CCNGG 2 cut(s) 1225, 1474
TaaI ACNGT 4 cut(s) 58, 570, 1397, 1754
TaiI ACGT 2 cut(s) 11, 151
TaqI TCGA 6 cut(s) 22, 239, 483, 1068, 1377, 1493
TasI AATT 5 cut(s) 83, 250, 282, 334, 1652
TatI WGTACW 2 cut(s) 912, 943
TauI GCSGC 3 cut(s) 451, 1063, 1181
TfiI GAWTC 5 cut(s) 121, 131, 711, 1374, 1429
TscAI CASTG 2 cut(s) 1134, 1144
TseFI GTSAC 2 cut(s) 1303, 1697
TseI GCWGC 3 cut(s) 515, 626, 1744
Tsp45I GTSAC 2 cut(s) 1303, 1697
TspDTI ATGAA 8 cut(s) 206, 281, 1176, 1248, 1479, 1616, 1668, 1719
TspGWI ACGGA 1 cut(s) 1467
TspRI CASTG 2 cut(s) 1134, 1144
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 1 cut(s) 83
XbaI TCTAGA 1 cut(s) 439
XceI RCATGY 1 cut(s) 733
XcmI CCANNNNNNNNNTGG 1 cut(s) 1567
XmiI GTMKAC 1 cut(s) 726
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 9 cut(s) 440, 809, 839, 849, 1151, 1301, 1391, 1484, 1774
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.