Rmu_co8405013.1_g000001

clathrin assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8405013.1
OG0012345
Physical Location & Seq
Reverse (-)
1 .. 978
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8405013.1_g000001.1.cds

Sequence Viewer

Length: 273 bp
atgttgggagctgatgaactgttggagcagctacctgcactgcagcaacttctttaccgtctagttggttgccagcctgaaggaacagcttataacaattacctcatacaatacgccttggctctgttctttgatatgccaagacacgatgcagttaaagctctcaatatttacaaaagagccggtcaacaggctgagcatcttgctgagttttatgagtattgcaagggtttggatcttgctagaacttttcagtttccaacactgagacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

91

Amino Acids

10.53

Weight (kDa)

5.55

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25940 AT5G57200
fragaria_vesca FvH4_4g07320
malus_domestica MD13G1242200.v1.1 MD16G1249100.v1.1
prunus_persica Prupe.1G075800_v2.0.a1 Prupe.1G076000_v2.0.a1
pyrus_communis pycom13g21390 pycom16g20850
rosa_chinensis RchiOBHm_Chr4g0399681
rosa_laevigata RLG00000009247
rosa_multiflora Rmu_co8405013.1_g000001
rosa_roxburghii Rroxscaffold_5G00344590
rosa_rugosa Rorug04G0018100
rosa_samantha Rh4AG095900 Rh4BG093400 Rh4CG104500 Rh4DG088500
rosa_wichuraiana Rw4G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 93
Acc36I ACCTGC 1 cut(s) 43
AclWI GGATC 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 99
AluBI AGCT 4 cut(s) 11, 31, 89, 161
AluI AGCT 4 cut(s) 11, 31, 89, 161
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 28, 43
BbvI GCAGC 2 cut(s) 40, 55
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 2 cut(s) 62, 243
BfmI CTRYAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 2 cut(s) 29, 44
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 2 cut(s) 30, 45
BmsI GCATC 2 cut(s) 139, 208
Bpu1102I GCTNAGC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 117
BseMII CTCAG 3 cut(s) 186, 198, 257
BseXI GCAGC 2 cut(s) 40, 55
BsgI GTGCAG 1 cut(s) 21
BsiSI CCGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 262
Bsp143I GATC 1 cut(s) 235
Bsp1720I GCTNAGC 1 cut(s) 195
BspCNI CTCAG 3 cut(s) 187, 199, 258
BspMAI CTGCAG 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 21, 59
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 3 cut(s) 195, 207, 266
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 40, 55
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 38, 263
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 182
CviJI RGCY 8 cut(s) 11, 31, 76, 89, 122, 161, 182, 194
CviKI_1 RGCY 8 cut(s) 11, 31, 76, 89, 122, 161, 182, 194
DdeI CTNAG 3 cut(s) 195, 207, 266
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaiI YATR 4 cut(s) 93, 107, 137, 216
Fnu4HI GCNGC 2 cut(s) 29, 44
Fsp4HI GCNGC 2 cut(s) 29, 44
FspBI CTAG 2 cut(s) 62, 243
GluI GCNGC 2 cut(s) 29, 44
HapII CCGG 1 cut(s) 183
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HpaII CCGG 1 cut(s) 183
Hpy166II GTNNAC 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 21, 59
HpyCH4V TGCA 4 cut(s) 38, 43, 152, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 3 cut(s) 195, 207, 266
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 8, 25
LpnPI CCDG 5 cut(s) 48, 86, 90, 176, 196
Lsp1109I GCAGC 2 cut(s) 40, 55
LweI GCATC 2 cut(s) 139, 208
MaeI CTAG 2 cut(s) 62, 243
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MflI RGATCY 1 cut(s) 235
MluCI AATT 1 cut(s) 97
MnlI CCTC 1 cut(s) 113
MseI TTAA 1 cut(s) 156
MspI CCGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 1 cut(s) 235
PkrI GCNGC 2 cut(s) 30, 45
PsiI TTATAA 1 cut(s) 93
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 1 cut(s) 235
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 29, 44
Sau3AI GATC 1 cut(s) 235
SetI ASST 6 cut(s) 13, 33, 37, 91, 105, 163
SfaNI GCATC 2 cut(s) 139, 208
SfcI CTRYAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 97
SspI AATATT 1 cut(s) 169
SspMI CTAG 2 cut(s) 62, 243
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 21, 59
TasI AATT 1 cut(s) 97
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 45, 270
TseI GCWGC 2 cut(s) 28, 43
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 2 cut(s) 45, 270
XspI CTAG 2 cut(s) 62, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.