Prupe.1G076000_v2.0.a1

clathrin assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012345
Physical Location & Seq
Forward (+)
5477498 .. 5479551
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G076000.1

Sequence Viewer

Length: 903 bp
ATGTTCTTTGATATGTCAAGACATGATGCAGTTAAAGCTCTCAATGTTTATAAAAGAGCTGGCCAACAGGCCGAAGCCCTAGCTGATTTTTATGAATATTGCAAGGGTTTGGATCTTGCTAGAACTTTTCAGTTTCCAACAGTGAGACAGCCACCTCCATCCTTTCTTGCAACAATGGAGGAGTATATAAAGGAAGCGCCGCAGTCCGGTTCTGTTAACAAGAGACTGGAATACCAGGAGACACACCAGCAGCCTCAGAAACCTGAAGAATCTCCTCCTCCTCCAGAGCCTGAAAAACAAGAAGAAGAAGTTGAGGAGAAAACGGAGGAAGAGGAAGAACCCCAACCTAAGGAAGAGGTAGTTGAACCTCCCCCTTCGATATCAACGAACGACACTGATCTTCTGGTACGTCTAAGGGAGATAAATCCAAAAGCTGCAGAAATTGAAGAAAGCAATGCCTTGGCTCTTGCAATAGTTCCACAAGGGAACGAACAACAATCTGGAGCAAGTTTCACACTGGTGACCACACCAAGCAACCATACAAGCCAAGTGCCCATGGACAAGAAGTTTGCTGGTGGCTTTGACAAGCTATTACTTGACAGCTTGTATGAAGATGAAGGTGCCAGGAGACAAACGCAGGCTATGGCTACGGATCCATTTGCAATGTCCAACAACATAGCACCCCCAACCAACGTGCAAATGGCGCTAATGGCTCAAGAACAACACCAACATCAGCAAATCCATCAGCAACAGAACCAGCAATATCAACAGCAGCAGAACATGATGATGGTGCCTCACCCTTATTATTCTCAATACCCCCAACAGATGCAGCCCTTGGGTTCTTTGAACCCGTTCGGAGATCCATTCAGCTTCCCTCCTCACTACGATCAGAAATGGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

301

Amino Acids

34.31

Weight (kDa)

4.68

Isoelectric Point (pI)

80.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25940 AT5G57200
fragaria_vesca FvH4_4g07320
malus_domestica MD13G1242200.v1.1 MD16G1249100.v1.1
prunus_persica Prupe.1G075800_v2.0.a1 Prupe.1G076000_v2.0.a1
pyrus_communis pycom13g21390 pycom16g20850
rosa_chinensis RchiOBHm_Chr4g0399681
rosa_laevigata RLG00000009247
rosa_multiflora Rmu_co8405013.1_g000001
rosa_roxburghii Rroxscaffold_5G00344590
rosa_rugosa Rorug04G0018100
rosa_samantha Rh4AG095900 Rh4BG093400 Rh4CG104500 Rh4DG088500
rosa_wichuraiana Rw4G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
AccB1I GGYRCC 2 cut(s) 620, 790
AciI CCGC 1 cut(s) 200
AclWI GGATC 4 cut(s) 120, 647, 660, 854
AcoI YGGCCR 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 2 cut(s) 206, 349
AgsI TTSAA 3 cut(s) 365, 446, 847
AjnI CCWGG 2 cut(s) 234, 623
AleI CACNNNNGTG 1 cut(s) 518
AluBI AGCT 7 cut(s) 38, 59, 83, 434, 589, 603, 870
AluI AGCT 7 cut(s) 38, 59, 83, 434, 589, 603, 870
Alw26I GTCTC 4 cut(s) 139, 217, 233, 622
AlwI GGATC 4 cut(s) 120, 647, 660, 854
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 2 cut(s) 61, 69
ApeKI GCWGC 4 cut(s) 250, 434, 772, 829
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
Asp700I GAANNNNTTC 1 cut(s) 851
AspLEI GCGC 2 cut(s) 199, 706
AsuHPI GGTGA 2 cut(s) 532, 788
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 555
BalI TGGCCA 1 cut(s) 63
BamHI GGATCC 1 cut(s) 652
BanI GGYRCC 2 cut(s) 620, 790
BbvI GCAGC 4 cut(s) 262, 421, 784, 841
BccI CCATC 3 cut(s) 166, 750, 781
BciT130I CCWGG 2 cut(s) 236, 625
BcoDI GTCTC 4 cut(s) 139, 217, 233, 622
BfaI CTAG 2 cut(s) 80, 120
BfmI CTRYAG 1 cut(s) 435
BfoI RGCGCY 2 cut(s) 200, 707
BisI GCNGC 5 cut(s) 200, 251, 435, 773, 830
BlsI GCNGC 5 cut(s) 201, 252, 436, 774, 831
Bme1390I CCNGG 2 cut(s) 236, 625
BmiI GGNNCC 3 cut(s) 622, 654, 792
BmrFI CCNGG 2 cut(s) 236, 625
BmsI GCATC 2 cut(s) 16, 816
BpmI CTGGAG 2 cut(s) 267, 522
BpuEI CTTGAG 1 cut(s) 699
BsaJI CCNNGG 3 cut(s) 459, 555, 834
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 349
Bse1I ACTGG 2 cut(s) 231, 522
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 2 cut(s) 460, 669
BseBI CCWGG 2 cut(s) 236, 625
BseDI CCNNGG 3 cut(s) 459, 555, 834
BseGI GGATG 2 cut(s) 158, 903
BseLI CCNNNNNNNGG 2 cut(s) 206, 349
BseMI GCAATG 2 cut(s) 460, 669
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 231, 522
BseRI GAGGAG 6 cut(s) 194, 264, 267, 270, 329, 867
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 4 cut(s) 262, 421, 784, 841
BshFI GGCC 2 cut(s) 63, 71
BshNI GGYRCC 2 cut(s) 620, 790
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 206, 349
BsmAI GTCTC 4 cut(s) 139, 217, 233, 622
BsnI GGCC 2 cut(s) 63, 71
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 5 cut(s) 112, 397, 652, 859, 886
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 1 cut(s) 200
BspANI GGCC 2 cut(s) 63, 71
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 3 cut(s) 622, 654, 792
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 4 cut(s) 120, 647, 660, 854
BspT107I GGYRCC 2 cut(s) 620, 790
BsrDI GCAATG 2 cut(s) 460, 669
BsrI ACTGG 2 cut(s) 231, 522
BssECI CCNNGG 3 cut(s) 459, 555, 834
BssMI GATC 5 cut(s) 112, 397, 652, 859, 886
BssT1I CCWWGG 3 cut(s) 459, 555, 834
Bst2UI CCWGG 2 cut(s) 236, 625
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 324, 348
BstC8I GCNNGC 2 cut(s) 61, 639
BstDEI CTNAG 3 cut(s) 255, 348, 413
BstDSI CCRYGG 1 cut(s) 555
BstEII GGTNACC 1 cut(s) 520
BstF5I GGATG 2 cut(s) 158, 903
BstH2I RGCGCY 2 cut(s) 200, 707
BstHHI GCGC 2 cut(s) 199, 706
BstKTI GATC 5 cut(s) 115, 400, 655, 862, 889
BstMAI GTCTC 4 cut(s) 139, 217, 233, 622
BstMBI GATC 5 cut(s) 112, 397, 652, 859, 886
BstMWI GCNNNNNNNGC 3 cut(s) 35, 703, 710
BstNI CCWGG 2 cut(s) 236, 625
BstPI GGTNACC 1 cut(s) 520
BstSCI CCNGG 2 cut(s) 234, 623
BstSFI CTRYAG 1 cut(s) 435
BstSLI GKGCMC 1 cut(s) 555
BstV1I GCAGC 4 cut(s) 262, 421, 784, 841
BstX2I RGATCY 3 cut(s) 112, 652, 859
BstYI RGATCY 3 cut(s) 112, 652, 859
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 2 cut(s) 63, 71
BtgI CCRYGG 1 cut(s) 555
BtsCI GGATG 2 cut(s) 158, 903
BtsIMutI CAGTG 3 cut(s) 147, 393, 515
Cac8I GCNNGC 2 cut(s) 61, 639
CaiI CAGNNNCTG 1 cut(s) 290
CfoI GCGC 2 cut(s) 199, 706
Csp6I GTAC 1 cut(s) 407
CviAII CATG 3 cut(s) 23, 556, 781
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 3 cut(s) 255, 348, 413
DpnI GATC 5 cut(s) 114, 399, 654, 861, 888
DpnII GATC 5 cut(s) 112, 397, 652, 859, 886
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 324, 348
EarI CTCTTC 2 cut(s) 324, 348
Eco130I CCWWGG 3 cut(s) 459, 555, 834
Eco32I GATATC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 285
Eco81I CCTNAGG 1 cut(s) 348
Eco91I GGTNACC 1 cut(s) 520
EcoO65I GGTNACC 1 cut(s) 520
EcoRII CCWGG 2 cut(s) 234, 623
EcoRV GATATC 1 cut(s) 381
EcoT14I CCWWGG 3 cut(s) 459, 555, 834
ErhI CCWWGG 3 cut(s) 459, 555, 834
FaeI CATG 3 cut(s) 26, 559, 784
FatI CATG 3 cut(s) 22, 555, 780
Fnu4HI GCNGC 5 cut(s) 200, 251, 435, 773, 830
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 5 cut(s) 200, 251, 435, 773, 830
FspBI CTAG 2 cut(s) 80, 120
GlaI GCGC 2 cut(s) 198, 705
GluI GCNGC 5 cut(s) 200, 251, 435, 773, 830
GsuI CTGGAG 2 cut(s) 267, 522
HaeII RGCGCY 2 cut(s) 200, 707
HaeIII GGCC 2 cut(s) 63, 71
HapII CCGG 1 cut(s) 207
HhaI GCGC 2 cut(s) 199, 706
Hin1II CATG 3 cut(s) 26, 559, 784
Hin6I GCGC 2 cut(s) 197, 704
HinP1I GCGC 2 cut(s) 197, 704
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 269
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 1 cut(s) 207
HphI GGTGA 2 cut(s) 532, 788
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 3 cut(s) 258, 857, 891
Hpy188III TCNNGA 4 cut(s) 18, 284, 501, 716
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 384, 611
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 2 cut(s) 409, 693
HpyCH4V TGCA 8 cut(s) 29, 102, 170, 437, 470, 662, 697, 829
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 703, 710
HpyF3I CTNAG 3 cut(s) 255, 348, 413
HpySE526I ACGT 2 cut(s) 409, 693
Hsp92II CATG 3 cut(s) 26, 559, 784
HspAI GCGC 2 cut(s) 197, 704
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 5 cut(s) 112, 397, 652, 859, 886
LmnI GCTCC 1 cut(s) 503
Lsp1109I GCAGC 4 cut(s) 262, 421, 784, 841
LweI GCATC 2 cut(s) 16, 816
MaeI CTAG 2 cut(s) 80, 120
MaeII ACGT 2 cut(s) 409, 693
MaeIII GTNAC 1 cut(s) 520
MalI GATC 5 cut(s) 114, 399, 654, 861, 888
MboI GATC 5 cut(s) 112, 397, 652, 859, 886
MboII GAAGA 9 cut(s) 278, 314, 317, 341, 347, 365, 392, 458, 623
MflI RGATCY 3 cut(s) 112, 652, 859
MhlI GDGCHC 1 cut(s) 555
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 1 cut(s) 441
MluNI TGGCCA 1 cut(s) 63
MmeI TCCRAC 2 cut(s) 161, 693
Mox20I TGGCCA 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 851
MscI TGGCCA 1 cut(s) 63
MseI TTAA 2 cut(s) 33, 216
MslI CAYNNNNRTG 2 cut(s) 518, 785
Msp20I TGGCCA 1 cut(s) 63
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 236, 625
MvaI CCWGG 2 cut(s) 236, 625
MwoI GCNNNNNNNGC 3 cut(s) 35, 703, 710
NcoI CCATGG 1 cut(s) 555
NdeII GATC 5 cut(s) 112, 397, 652, 859, 886
NlaIII CATG 3 cut(s) 26, 559, 784
NlaIV GGNNCC 3 cut(s) 622, 654, 792
NmuCI GTSAC 1 cut(s) 520
OliI CACNNNNGTG 1 cut(s) 518
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PdmI GAANNNNTTC 1 cut(s) 851
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 5 cut(s) 201, 252, 436, 774, 831
PsiI TTATAA 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 234, 623
PspEI GGTNACC 1 cut(s) 520
PspGI CCWGG 2 cut(s) 234, 623
PspN4I GGNNCC 3 cut(s) 622, 654, 792
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 3 cut(s) 112, 652, 859
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 2 cut(s) 518, 785
SaqAI TTAA 2 cut(s) 33, 216
SatI GCNGC 5 cut(s) 200, 251, 435, 773, 830
Sau3AI GATC 5 cut(s) 112, 397, 652, 859, 886
ScrFI CCNGG 2 cut(s) 236, 625
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 2 cut(s) 16, 816
SfcI CTRYAG 1 cut(s) 435
SmiMI CAYNNNNRTG 2 cut(s) 518, 785
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
Sse9I AATT 1 cut(s) 441
SsiI CCGC 1 cut(s) 200
SspI AATATT 1 cut(s) 98
SspMI CTAG 2 cut(s) 80, 120
StyD4I CCNGG 2 cut(s) 234, 623
StyI CCWWGG 3 cut(s) 459, 555, 834
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 2 cut(s) 412, 696
TaqI TCGA 1 cut(s) 377
TasI AATT 1 cut(s) 441
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 33, 216
Tru9I TTAA 2 cut(s) 33, 216
TscAI CASTG 3 cut(s) 147, 400, 522
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 4 cut(s) 250, 434, 772, 829
Tsp45I GTSAC 1 cut(s) 520
TspDTI ATGAA 3 cut(s) 108, 624, 630
TspGWI ACGGA 2 cut(s) 338, 665
TspRI CASTG 3 cut(s) 147, 400, 522
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XmnI GAANNNNTTC 1 cut(s) 851
XspI CTAG 2 cut(s) 80, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.