RchiOBHm_Chr4g0399681

clathrin assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012345
Physical Location & Seq
Forward (+)
16965070 .. 16968318
3249 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37179

Sequence Viewer

Length: 1413 bp
ATGCTCCAAATTTCCAATTTTAAAGACGACTCAAGTCCCCTTGCTTGGGATTGTTCTTCTTGGGTTAGGACATATGCGCTCTTTTTAGAAGAACGTCTAGAATGTTTCCGAGTTTTGAAATATGACATTGAGTCAGAGCGTTTGACCAAAACATCGCCAGGATCAACCAAGGTGCATAGTAGAACACGAATGTTGGGAGCTGATGAACTGTTGGAGCAGCTACCTGCACTGCAGCAACTTCTTTACCGTCTAGTTGGTTGCCAGCCTGAAGGAACAGCTTATAACAATTACCTCATACAATATGCCTTGGCTCTGGTATTAAAAGAGAGCTTTAAAATATATTGTGCCATCAATGATGGAATCATAAATCTAGTAGATATGTTTTTTGATATGCCAAGACACGATGCAGTTAAAGCTCTCAATATTTACAAAAGAGCCGGTCAACAGGCTGAGCATCTTGCTGAGTTTTATGAGTATTGCAAGGGTTTGGATCTTGCTAGAACTTTTCAGTTTCCAACACTGAGACAGCCACCGCCGTCATTTCTTGCAACAATGGAAGAGTACATAAAAGAAGCGCCTCAGTCCGGTGCTGTTCAGAAGAGACTGGAGTACCACGAGACAGAAGAGCGGCCTCAACAACCAGCGCCTCCACCTCCAGAGCCTGAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAAAAGTTGAGGAACCACCGGAAAAAGTTGAGGAAGAAACCCAACCAAAGGAGGAAGAGGTAGTTGAACCTCCTCCCTTGATCGAAACTGATCTCCTGGGCCTAAATGAAATAAATCCAAGAGCTGCAGAAATTGAAGAAAGCAATGCTCTAGCTCTTGCTATAATTCCAAATGGGACTGAACCACAATCTGGATCAAATTTGAATGATATCGGTGGGACTTCAGGTTGGGAGCTGGCCCTGGTAACCACACCAAGCACCAATACTGGCCCCGTGGTAGATAAAAAATTGGCTGGTGGGTTTGACAAGCTATTACTCGATAGCTTGTATGAAGATGATGGTGCAAGGAGACAGCTACAACTCCAGAATGCAGGATATGGTTATGGCGCGACAAGCCTGCAAAATCCATTTGAACAAGCACAGCAGCAGCCTGTACATGATCCATTTGCAATGTCTAACAGCATAGCGCCTCCTACGAATGTGCAAATGGCACTAATGGCTCAACAACAACACCAAGTACACCAACAGCAACACCAAATGCAGCAACAGTATCAACAACAACAGAACATGATGATGGTACCTCACCCATATTATTCTCAATATCAACAGGCGCAACAACCCGCAGGCCCTTCGAATCCATTTGGAGACCCTTTCAGCTTCCCTCCTCCTTCTTCTAGTGCAATGCCTAACCAAGGAAACCAACACCTACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

470

Amino Acids

53.11

Weight (kDa)

4.63

Isoelectric Point (pI)

68.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 3 - 191 9.7e-58 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25940 AT5G57200
fragaria_vesca FvH4_4g07320
malus_domestica MD13G1242200.v1.1 MD16G1249100.v1.1
prunus_persica Prupe.1G075800_v2.0.a1 Prupe.1G076000_v2.0.a1
pyrus_communis pycom13g21390 pycom16g20850
rosa_chinensis RchiOBHm_Chr4g0399681
rosa_laevigata RLG00000009247
rosa_multiflora Rmu_co8405013.1_g000001
rosa_roxburghii Rroxscaffold_5G00344590
rosa_rugosa Rorug04G0018100
rosa_samantha Rh4AG095900 Rh4BG093400 Rh4CG104500 Rh4DG088500
rosa_wichuraiana Rw4G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 232
Acc65I GGTACC 1 cut(s) 1276
AccB1I GGYRCC 1 cut(s) 1276
AccB7I CCANNNNNTGG 1 cut(s) 890
AccBSI CCGCTC 1 cut(s) 628
AccII CGCG 1 cut(s) 1088
AciI CCGC 3 cut(s) 533, 628, 1320
AclWI GGATC 4 cut(s) 169, 498, 901, 1133
AcsI RAATTY 2 cut(s) 9, 898
AcuI CTGAAG 2 cut(s) 288, 906
AfaI GTAC 5 cut(s) 563, 611, 1134, 1218, 1278
AfiI CCNNNNNNNGG 6 cut(s) 45, 46, 584, 748, 890, 1391
AgsI TTSAA 5 cut(s) 118, 767, 836, 904, 1112
AhdI GACNNNNNGTC 1 cut(s) 130
AjnI CCWGG 3 cut(s) 157, 795, 939
Alw26I GTCTC 5 cut(s) 517, 595, 611, 1042, 1338
AlwI GGATC 4 cut(s) 169, 498, 901, 1133
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 5 cut(s) 629, 799, 936, 967, 1324
ApeKI GCWGC 6 cut(s) 217, 232, 824, 1123, 1126, 1240
ApoI RAATTY 2 cut(s) 9, 898
Asp718I GGTACC 1 cut(s) 1276
AspLEI GCGC 6 cut(s) 79, 577, 646, 1088, 1168, 1312
AspS9I GGNCC 4 cut(s) 799, 937, 968, 1325
AsuHPI GGTGA 1 cut(s) 1274
AsuII TTCGAA 1 cut(s) 1331
BaeI ACNNNNGTAYC 2 cut(s) 593, 626
BanI GGYRCC 1 cut(s) 1276
BauI CACGAG 1 cut(s) 614
BbvI GCAGC 6 cut(s) 229, 244, 811, 1135, 1138, 1252
BccI CCATC 4 cut(s) 350, 356, 1031, 1267
BceAI ACGGC 1 cut(s) 520
BcgI CGANNNNNNTGC 4 cut(s) 1078, 1112, 1311, 1345
BciT130I CCWGG 3 cut(s) 159, 797, 941
BcoDI GTCTC 5 cut(s) 517, 595, 611, 1042, 1338
BfaI CTAG 6 cut(s) 98, 251, 371, 498, 851, 1374
BfmI CTRYAG 3 cut(s) 230, 825, 1409
BfoI RGCGCY 3 cut(s) 578, 647, 1169
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 7 cut(s) 218, 233, 629, 825, 1124, 1127, 1241
BlpI GCTNAGC 1 cut(s) 450
BlsI GCNGC 7 cut(s) 219, 234, 630, 826, 1125, 1128, 1242
Bme1390I CCNGG 3 cut(s) 159, 797, 941
BmeRI GACNNNNNGTC 1 cut(s) 130
BmgT120I GGNCC 4 cut(s) 799, 937, 968, 1325
BmiI GGNNCC 3 cut(s) 714, 970, 1278
BmrFI CCNGG 3 cut(s) 159, 797, 941
BmsI GCATC 2 cut(s) 394, 463
BoxI GACNNNNGTC 1 cut(s) 33
BpmI CTGGAG 3 cut(s) 626, 639, 1046
Bpu1102I GCTNAGC 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 1331
BpuEI CTTGAG 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 1338
BsaJI CCNNGG 6 cut(s) 168, 306, 796, 939, 972, 1390
BsaWI WCCGGW 2 cut(s) 584, 718
Bsc4I CCNNNNNNNGG 6 cut(s) 45, 46, 584, 748, 890, 1391
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 2 cut(s) 609, 970
Bse3DI GCAATG 3 cut(s) 850, 1155, 1386
BseBI CCWGG 3 cut(s) 159, 797, 941
BseDI CCNNGG 6 cut(s) 168, 306, 796, 939, 972, 1390
BseLI CCNNNNNNNGG 6 cut(s) 45, 46, 584, 748, 890, 1391
BseMI GCAATG 3 cut(s) 850, 1155, 1386
BseMII CTCAG 4 cut(s) 441, 453, 512, 593
BseNI ACTGG 2 cut(s) 609, 970
BseRI GAGGAG 2 cut(s) 762, 1353
BseXI GCAGC 6 cut(s) 229, 244, 811, 1135, 1138, 1252
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 1088
BshFI GGCC 5 cut(s) 631, 801, 938, 969, 1326
BshNI GGYRCC 1 cut(s) 1276
BsiSI CCGG 3 cut(s) 438, 585, 719
BslFI GGGAC 3 cut(s) 21, 889, 931
BslI CCNNNNNNNGG 6 cut(s) 45, 46, 584, 748, 890, 1391
BsmAI GTCTC 5 cut(s) 517, 595, 611, 1042, 1338
BsmFI GGGAC 3 cut(s) 21, 889, 931
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 5 cut(s) 631, 801, 938, 969, 1326
Bso31I GGTCTC 1 cut(s) 1338
Bsp119I TTCGAA 1 cut(s) 1331
Bsp1407I TGTACA 1 cut(s) 1132
Bsp143I GATC 6 cut(s) 161, 490, 780, 790, 893, 1138
Bsp1720I GCTNAGC 1 cut(s) 450
BspACI CCGC 3 cut(s) 533, 628, 1320
BspANI GGCC 5 cut(s) 631, 801, 938, 969, 1326
BspCNI CTCAG 4 cut(s) 442, 454, 513, 592
BspFNI CGCG 1 cut(s) 1088
BspLI GGNNCC 3 cut(s) 714, 970, 1278
BspMAI CTGCAG 2 cut(s) 234, 829
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 4 cut(s) 169, 498, 901, 1133
BspQI GCTCTTC 1 cut(s) 618
BspT104I TTCGAA 1 cut(s) 1331
BspT107I GGYRCC 1 cut(s) 1276
BspTNI GGTCTC 1 cut(s) 1338
BsrBI CCGCTC 1 cut(s) 628
BsrDI GCAATG 3 cut(s) 850, 1155, 1386
BsrFI RCCGGY 1 cut(s) 437
BsrGI TGTACA 1 cut(s) 1132
BsrI ACTGG 2 cut(s) 609, 970
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 6 cut(s) 168, 306, 796, 939, 972, 1390
BssMI GATC 6 cut(s) 161, 490, 780, 790, 893, 1138
BssSI CACGAG 1 cut(s) 614
BssT1I CCWWGG 3 cut(s) 168, 306, 1390
Bst2BI CACGAG 1 cut(s) 614
Bst2UI CCWGG 3 cut(s) 159, 797, 941
Bst4CI ACNGT 4 cut(s) 210, 248, 1248, 1410
Bst6I CTCTTC 4 cut(s) 552, 593, 618, 750
BstAUI TGTACA 1 cut(s) 1132
BstBI TTCGAA 1 cut(s) 1331
BstC8I GCNNGC 4 cut(s) 263, 936, 1097, 1324
BstDEI CTNAG 4 cut(s) 450, 462, 521, 579
BstDSI CCRYGG 1 cut(s) 972
BstEII GGTNACC 1 cut(s) 943
BstENI CCTNNNNNAGG 1 cut(s) 1389
BstFNI CGCG 1 cut(s) 1088
BstH2I RGCGCY 3 cut(s) 578, 647, 1169
BstHHI GCGC 6 cut(s) 79, 577, 646, 1088, 1168, 1312
BstKTI GATC 6 cut(s) 164, 493, 783, 793, 896, 1141
BstMAI GTCTC 5 cut(s) 517, 595, 611, 1042, 1338
BstMBI GATC 6 cut(s) 161, 490, 780, 790, 893, 1138
BstMWI GCNNNNNNNGC 3 cut(s) 413, 1092, 1196
BstNI CCWGG 3 cut(s) 159, 797, 941
BstPAI GACNNNNGTC 1 cut(s) 33
BstPI GGTNACC 1 cut(s) 943
BstSCI CCNGG 3 cut(s) 157, 795, 939
BstSFI CTRYAG 3 cut(s) 230, 825, 1409
BstUI CGCG 1 cut(s) 1088
BstV1I GCAGC 6 cut(s) 229, 244, 811, 1135, 1138, 1252
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 5 cut(s) 631, 801, 938, 969, 1326
BtgI CCRYGG 1 cut(s) 972
BtgZI GCGATG 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 227, 518
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 4 cut(s) 263, 936, 1097, 1324
CaiI CAGNNNCTG 1 cut(s) 662
CfoI GCGC 6 cut(s) 79, 577, 646, 1088, 1168, 1312
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 4 cut(s) 799, 937, 968, 1325
Csp6I GTAC 5 cut(s) 562, 610, 1133, 1217, 1277
CviAII CATG 2 cut(s) 1136, 1267
CviQI GTAC 5 cut(s) 562, 610, 1133, 1217, 1277
DdeI CTNAG 4 cut(s) 450, 462, 521, 579
DpnI GATC 6 cut(s) 163, 492, 782, 792, 895, 1140
DpnII GATC 6 cut(s) 161, 490, 780, 790, 893, 1138
DraI TTTAAA 2 cut(s) 22, 334
DriI GACNNNNNGTC 1 cut(s) 130
Eam1104I CTCTTC 4 cut(s) 552, 593, 618, 750
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 4 cut(s) 552, 593, 618, 750
Eco130I CCWWGG 3 cut(s) 168, 306, 1390
Eco31I GGTCTC 1 cut(s) 1338
Eco32I GATATC 1 cut(s) 910
Eco57I CTGAAG 2 cut(s) 288, 906
Eco91I GGTNACC 1 cut(s) 943
EcoNI CCTNNNNNAGG 1 cut(s) 1389
EcoO109I RGGNCCY 1 cut(s) 1325
EcoO65I GGTNACC 1 cut(s) 943
EcoRII CCWGG 3 cut(s) 157, 795, 939
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 3 cut(s) 168, 306, 1390
ErhI CCWWGG 3 cut(s) 168, 306, 1390
FaeI CATG 2 cut(s) 1139, 1270
FaqI GGGAC 3 cut(s) 21, 889, 931
FatI CATG 2 cut(s) 1135, 1266
FauI CCCGC 1 cut(s) 1327
FauNDI CATATG 1 cut(s) 73
Fnu4HI GCNGC 7 cut(s) 218, 233, 629, 825, 1124, 1127, 1241
Fsp4HI GCNGC 7 cut(s) 218, 233, 629, 825, 1124, 1127, 1241
FspBI CTAG 6 cut(s) 98, 251, 371, 498, 851, 1374
GlaI GCGC 6 cut(s) 78, 576, 645, 1087, 1167, 1311
GluI GCNGC 7 cut(s) 218, 233, 629, 825, 1124, 1127, 1241
GsuI CTGGAG 3 cut(s) 626, 639, 1046
HaeII RGCGCY 3 cut(s) 578, 647, 1169
HaeIII GGCC 5 cut(s) 631, 801, 938, 969, 1326
HapII CCGG 3 cut(s) 438, 585, 719
HhaI GCGC 6 cut(s) 79, 577, 646, 1088, 1168, 1312
Hin1II CATG 2 cut(s) 1139, 1270
Hin6I GCGC 6 cut(s) 77, 575, 644, 1086, 1166, 1310
HinP1I GCGC 6 cut(s) 77, 575, 644, 1086, 1166, 1310
HincII GTYRAC 1 cut(s) 443
HindII GTYRAC 1 cut(s) 443
HinfI GANTC 4 cut(s) 29, 131, 360, 1333
HpaII CCGG 3 cut(s) 438, 585, 719
HphI GGTGA 1 cut(s) 1274
Hpy166II GTNNAC 2 cut(s) 443, 1219
Hpy188I TCNGA 3 cut(s) 110, 136, 597
Hpy188III TCNNGA 4 cut(s) 98, 656, 891, 1063
Hpy8I GTNNAC 2 cut(s) 443, 1219
HpyAV CCTTC 3 cut(s) 263, 1338, 1377
HpyCH4III ACNGT 4 cut(s) 210, 248, 1248, 1410
HpyCH4IV ACGT 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 1092, 1196
HpyF3I CTNAG 4 cut(s) 450, 462, 521, 579
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 2 cut(s) 1139, 1270
HspAI GCGC 6 cut(s) 77, 575, 644, 1086, 1166, 1310
KpnI GGTACC 1 cut(s) 1280
Kzo9I GATC 6 cut(s) 161, 490, 780, 790, 893, 1138
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 4 cut(s) 9, 197, 214, 931
Lsp1109I GCAGC 6 cut(s) 229, 244, 811, 1135, 1138, 1252
LweI GCATC 2 cut(s) 394, 463
MaeI CTAG 6 cut(s) 98, 251, 371, 498, 851, 1374
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 943
MalI GATC 6 cut(s) 163, 492, 782, 792, 895, 1140
MbiI CCGCTC 1 cut(s) 628
MboI GATC 6 cut(s) 161, 490, 780, 790, 893, 1138
MflI RGATCY 1 cut(s) 490
MluCI AATT 7 cut(s) 9, 16, 286, 831, 864, 898, 986
MlyI GAGTC 2 cut(s) 23, 140
MmeI TCCRAC 2 cut(s) 192, 539
MseI TTAA 4 cut(s) 21, 320, 333, 411
MslI CAYNNNNRTG 1 cut(s) 1271
MspI CCGG 3 cut(s) 438, 585, 719
MspR9I CCNGG 3 cut(s) 159, 797, 941
Mva1269I GAATGC 1 cut(s) 1072
MvaI CCWGG 3 cut(s) 159, 797, 941
MvnI CGCG 1 cut(s) 1088
MwoI GCNNNNNNNGC 3 cut(s) 413, 1092, 1196
NdeI CATATG 1 cut(s) 73
NdeII GATC 6 cut(s) 161, 490, 780, 790, 893, 1138
NlaIII CATG 2 cut(s) 1139, 1270
NlaIV GGNNCC 3 cut(s) 714, 970, 1278
NspV TTCGAA 1 cut(s) 1331
PciSI GCTCTTC 1 cut(s) 618
PctI GAATGC 1 cut(s) 1072
PfeI GAWTC 2 cut(s) 360, 1333
PflMI CCANNNNNTGG 1 cut(s) 890
PkrI GCNGC 7 cut(s) 219, 234, 630, 826, 1125, 1128, 1242
PleI GAGTC 2 cut(s) 23, 139
PpsI GAGTC 2 cut(s) 23, 139
PshAI GACNNNNGTC 1 cut(s) 33
PsiI TTATAA 1 cut(s) 282
Psp6I CCWGG 3 cut(s) 157, 795, 939
PspEI GGTNACC 1 cut(s) 943
PspGI CCWGG 3 cut(s) 157, 795, 939
PspN4I GGNNCC 3 cut(s) 714, 970, 1278
PspPI GGNCC 4 cut(s) 799, 937, 968, 1325
PstI CTGCAG 2 cut(s) 234, 829
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 5 cut(s) 563, 611, 1134, 1218, 1278
RsaNI GTAC 5 cut(s) 562, 610, 1133, 1217, 1277
RseI CAYNNNNRTG 1 cut(s) 1271
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 4 cut(s) 21, 320, 333, 411
SatI GCNGC 7 cut(s) 218, 233, 629, 825, 1124, 1127, 1241
Sau3AI GATC 6 cut(s) 161, 490, 780, 790, 893, 1138
Sau96I GGNCC 4 cut(s) 799, 937, 968, 1325
SchI GAGTC 2 cut(s) 23, 140
ScrFI CCNGG 3 cut(s) 159, 797, 941
SfaNI GCATC 2 cut(s) 394, 463
SfcI CTRYAG 3 cut(s) 230, 825, 1409
SfuI TTCGAA 1 cut(s) 1331
SmiMI CAYNNNNRTG 1 cut(s) 1271
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 7 cut(s) 9, 16, 286, 831, 864, 898, 986
SsiI CCGC 3 cut(s) 533, 628, 1320
SspI AATATT 1 cut(s) 424
SspMI CTAG 6 cut(s) 98, 251, 371, 498, 851, 1374
StyD4I CCNGG 3 cut(s) 157, 795, 939
StyI CCWWGG 3 cut(s) 168, 306, 1390
TaaI ACNGT 4 cut(s) 210, 248, 1248, 1410
TaiI ACGT 1 cut(s) 97
TaqI TCGA 3 cut(s) 783, 1017, 1331
TasI AATT 7 cut(s) 9, 16, 286, 831, 864, 898, 986
TatI WGTACW 3 cut(s) 561, 1132, 1216
TauI GCSGC 1 cut(s) 631
TfiI GAWTC 2 cut(s) 360, 1333
Tru1I TTAA 4 cut(s) 21, 320, 333, 411
Tru9I TTAA 4 cut(s) 21, 320, 333, 411
TscAI CASTG 2 cut(s) 234, 525
TseI GCWGC 6 cut(s) 217, 232, 824, 1123, 1126, 1240
TspDTI ATGAA 3 cut(s) 219, 822, 1044
TspRI CASTG 2 cut(s) 234, 525
Van91I CCANNNNNTGG 1 cut(s) 890
XagI CCTNNNNNAGG 1 cut(s) 1389
XapI RAATTY 2 cut(s) 9, 898
XbaI TCTAGA 1 cut(s) 97
XspI CTAG 6 cut(s) 98, 251, 371, 498, 851, 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.