Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005020

Physical Location & Seq

Genomic Coordinates Reverse (-)

23340746 .. 23343489

Gene Structure 2744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGTTTGTTTGGAACGAAGAAGATCGGGAAGTATGAGATAGGAAGAACAATCGGAGAAGGGAATTTCGCAAAAGTGAAACTTGGTTACGACACGACCAATGGTACTTACGTAGCTGTCAAAATCATAGACAAGGCTTTGGTTATTCAAAAGGGTCTTGAGTCTCAAGTCAAGAGAGAGATACGAACGATGAAGCTTCTTAACCATCCCAACATCGTCCAAATACACGAGGTGATTGGAACCAAGACAAAGATCTGTATAGTTATGGAATACGTTTCAGGTGGTCAGCTTTCAGACAGACTTGGAAGACAGAAAATGAAAGAATCAGATGCTAGAAAACTTTTCCAACAATTGATTGATGCTGTTGATTATTGTCATAACAGAGGAGTTTATCATAGAGATCTTAAGCCACAAAACTTGTTACTAGATTCAAAGGGTAATCTCAAAGTTTCTGACTTTGGATTAAGTGCAGTTCCTAAATCGGGGGATATGCTCTCTACAGCTTGTGGCTCTCCATGTTATATAGCACCAGAGTTGATTATGAACAAAGGCTACTCAGGAGCAGCAGTAGATGTATGGTCTTGTGGAGTGATTCTATTTGAATTGCTTGCTGGTTATCCACCTTTCGATGATCATACACTTCCGGTTTTGTATAAGAAGATACTCAGAGCAGATTACACGTTCCCACCTGGATTCACTGGAGAGCAGAAGAGGCTAATCTTTAACATTCTTGACCCAAATCCTCTAAGTCGTATAACACTAGCTGAGATAATCATCAAAGATTCTTGGTTCAAGATAGGTTATACACCAGTTTATCATCAACTTTCAGACTCAATCAAGGACAATGTCGCGGAGATAAATGCAGCAACCGCGTCATCAAATTTCATAAATGCTTTTCAGATAATAGCAATGTCTAGTGATCTAGATTTGTCAGGTCTCTTCGAAGAAAATGATGATAAGAGATATAAAACAAGAATTGGGTCCAAGAACACAGCACAAGAAACAATCAAGAAGATTGAAGCTGCAGCAACTTATGTTAGTTTATCAGTTGAGAGAATAAAGCACTTCAAGGTTAAGATTCAGCCAAAGGAGATAAGATCAAGATCTTCTTATGACTTATTATCAGCAGAGGTGATAGAGGTGACTCCAACAAATTGTGTTATAGAAATATCGAAATCCGCAGGCGAGTTAAGACTATACATGGAGTTTTGCCAGAGCTTATCAAGCTTACTTACCGCGGAAGTAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0033554 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0098588 GO:0098805 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

416

Amino Acids

46.34

Weight (kDa)

8.72

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 264	1.1e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 258	1.5e-40	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	65 - 157	1.4e-06	ABC1 atypical kinase-like domain
NAF	PF03822	294 - 351	1.3e-17	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57630 AT5G57630 AT5G57630
fragaria_vesca	FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900
malus_domestica	MD13G1265500.v1.1
prunus_persica	Prupe.1G091700_v2.0.a1 Prupe.1G091700_v2.0.a1
pyrus_communis	pycom13g23580
rosa_chinensis	RchiOBHm_Chr4g0403561
rosa_laevigata	RLG00000008968 RLG00000017445
rosa_multiflora	Rmu_sc0007038.1_g000017
rosa_roxburghii	Rroxscaffold_2G00103160 Rroxscaffold_2G00117840 Rroxscaffold_5G00348210
rosa_rugosa	Rorug04G0044300 Rorug04G0044400
rosa_samantha	Rh1CG276800 Rh2CG037600 Rh4AG119500 Rh4BG112600 Rh4CG127500 Rh4DG112200 Rh5CG124600
rosa_wichuraiana	Rw4G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	851, 872, 1238
AciI	CCGC	5 cut(s)	851, 870, 1179, 1236, 1238
AcsI	RAATTY	2 cut(s)	64, 880
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	482
AflII	CTTAAG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	6 cut(s)	149, 432, 602, 793, 1019, 1069
AjnI	CCWGG	1 cut(s)	688
AluBI	AGCT	9 cut(s)	116, 196, 289, 503, 764, 1022, 1218, 1227, 1248
AluI	AGCT	9 cut(s)	116, 196, 289, 503, 764, 1022, 1218, 1227, 1248
Alw26I	GTCTC	2 cut(s)	168, 941
ApeKI	GCWGC	4 cut(s)	563, 863, 1022, 1025
ApoI	RAATTY	2 cut(s)	64, 880
AspS9I	GGNCC	1 cut(s)	981
AsuHPI	GGTGA	3 cut(s)	244, 1144, 1153
AsuII	TTCGAA	1 cut(s)	942
AvaII	GGWCC	1 cut(s)	981
BaeI	ACNNNNGTAYC	2 cut(s)	96, 129
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	313
BbvI	GCAGC	4 cut(s)	575, 875, 1009, 1037
BccI	CCATC	1 cut(s)	213
BciT130I	CCWGG	1 cut(s)	690
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	2 cut(s)	168, 941
BfaI	CTAG	5 cut(s)	333, 425, 761, 915, 923
BfmI	CTRYAG	2 cut(s)	498, 1023
BfrI	CTTAAG	1 cut(s)	404
BglII	AGATCT	3 cut(s)	252, 400, 1103
BisI	GCNGC	4 cut(s)	564, 864, 1023, 1026
BlsI	GCNGC	4 cut(s)	565, 865, 1024, 1027
Bme1390I	CCNGG	1 cut(s)	690
Bme18I	GGWCC	1 cut(s)	981
BmgT120I	GGNCC	1 cut(s)	981
BmiI	GGNNCC	2 cut(s)	241, 982
BmrFI	CCNGG	1 cut(s)	690
BmsI	GCATC	2 cut(s)	319, 349
BpiI	GAAGAC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	720
Bpu14I	TTCGAA	1 cut(s)	942
BpuEI	CTTGAG	2 cut(s)	150, 179
BsaAI	YACGTR	1 cut(s)	112
BsaBI	GATNNNNATC	2 cut(s)	773, 1102
BsaI	GGTCTC	1 cut(s)	941
BsaJI	CCNNGG	1 cut(s)	1236
BsaWI	WCCGGW	1 cut(s)	643
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	703, 809
Bse3DI	GCAATG	1 cut(s)	915
Bse8I	GATNNNNATC	2 cut(s)	773, 1102
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	1 cut(s)	1236
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	2 cut(s)	773, 1102
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	1 cut(s)	915
BseMII	CTCAG	3 cut(s)	570, 679, 756
BseNI	ACTGG	2 cut(s)	703, 809
BseRI	GAGGAG	1 cut(s)	399
BseXI	GCAGC	4 cut(s)	575, 875, 1009, 1037
BsgI	GTGCAG	1 cut(s)	489
Bsh1236I	CGCG	3 cut(s)	851, 872, 1238
BsiSI	CCGG	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	2 cut(s)	168, 941
Bso31I	GGTCTC	1 cut(s)	941
Bsp119I	TTCGAA	1 cut(s)	942
Bsp143I	GATC	7 cut(s)	24, 252, 400, 631, 919, 1097, 1103
BspACI	CCGC	5 cut(s)	851, 870, 1179, 1236, 1238
BspCNI	CTCAG	3 cut(s)	569, 678, 757
BspFNI	CGCG	3 cut(s)	851, 872, 1238
BspLI	GGNNCC	2 cut(s)	241, 982
BspMAI	CTGCAG	1 cut(s)	1027
BspT104I	TTCGAA	1 cut(s)	942
BspTI	CTTAAG	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	941
BsrDI	GCAATG	1 cut(s)	915
BsrI	ACTGG	2 cut(s)	703, 809
BssECI	CCNNGG	1 cut(s)	1236
BssMI	GATC	7 cut(s)	24, 252, 400, 631, 919, 1097, 1103
BssSI	CACGAG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	690
Bst6I	CTCTTC	2 cut(s)	704, 944
BstAFI	CTTAAG	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	942
BstC8I	GCNNGC	2 cut(s)	609, 1183
BstDEI	CTNAG	4 cut(s)	556, 665, 746, 765
BstDSI	CCRYGG	1 cut(s)	1236
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	3 cut(s)	851, 872, 1238
BstKTI	GATC	7 cut(s)	27, 255, 403, 634, 922, 1100, 1106
BstMAI	GTCTC	2 cut(s)	168, 941
BstMBI	GATC	7 cut(s)	24, 252, 400, 631, 919, 1097, 1103
BstMWI	GCNNNNNNNGC	3 cut(s)	712, 869, 1224
BstNI	CCWGG	1 cut(s)	690
BstSCI	CCNGG	1 cut(s)	688
BstSFI	CTRYAG	2 cut(s)	498, 1023
BstSNI	TACGTA	1 cut(s)	112
BstUI	CGCG	3 cut(s)	851, 872, 1238
BstV1I	GCAGC	4 cut(s)	575, 875, 1009, 1037
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	3 cut(s)	252, 400, 1103
BstYI	RGATCY	3 cut(s)	252, 400, 1103
BtgI	CCRYGG	1 cut(s)	1236
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	2 cut(s)	609, 1183
Cfr13I	GGNCC	1 cut(s)	981
Cfr42I	CCGCGG	1 cut(s)	1239
CseI	GACGC	1 cut(s)	861
Csp6I	GTAC	1 cut(s)	105
CspCI	CAANNNNNGTGG	2 cut(s)	399, 434
CviAII	CATG	2 cut(s)	516, 1201
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	4 cut(s)	556, 665, 746, 765
DpnI	GATC	7 cut(s)	26, 254, 402, 633, 921, 1099, 1105
DpnII	GATC	7 cut(s)	24, 252, 400, 631, 919, 1097, 1103
DraIII	CACNNNGTG	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	704, 944
EarI	CTCTTC	2 cut(s)	704, 944
Eco105I	TACGTA	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	941
Eco47I	GGWCC	1 cut(s)	981
EcoRII	CCWGG	1 cut(s)	688
FaeI	CATG	2 cut(s)	519, 1204
FalI	AAGNNNNNCTT	4 cut(s)	66, 98, 1093, 1125
FatI	CATG	2 cut(s)	515, 1200
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	4 cut(s)	564, 864, 1023, 1026
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	4 cut(s)	564, 864, 1023, 1026
FspBI	CTAG	5 cut(s)	333, 425, 761, 915, 923
GluI	GCNGC	4 cut(s)	564, 864, 1023, 1026
GsuI	CTGGAG	1 cut(s)	720
HapII	CCGG	1 cut(s)	644
HgaI	GACGC	1 cut(s)	861
Hin1II	CATG	2 cut(s)	519, 1204
HindIII	AAGCTT	2 cut(s)	194, 1225
HinfI	GANTC	9 cut(s)	161, 323, 428, 592, 693, 782, 830, 1078, 1144
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	3 cut(s)	244, 1144, 1153
Hpy188I	TCNGA	7 cut(s)	56, 295, 328, 454, 668, 829, 900
Hpy188III	TCNNGA	9 cut(s)	28, 158, 172, 558, 731, 793, 923, 1009, 1101
HpyAV	CCTTC	1 cut(s)	53
HpyCH4IV	ACGT	3 cut(s)	111, 273, 680
HpyCH4V	TGCA	3 cut(s)	470, 863, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	712, 869, 1224
HpyF3I	CTNAG	4 cut(s)	556, 665, 746, 765
HpySE526I	ACGT	3 cut(s)	111, 273, 680
Hsp92II	CATG	2 cut(s)	519, 1204
Ksp22I	TGATCA	1 cut(s)	631
KspI	CCGCGG	1 cut(s)	1239
Kzo9I	GATC	7 cut(s)	24, 252, 400, 631, 919, 1097, 1103
LmnI	GCTCC	1 cut(s)	560
Lsp1109I	GCAGC	4 cut(s)	575, 875, 1009, 1037
LweI	GCATC	2 cut(s)	319, 349
MaeI	CTAG	5 cut(s)	333, 425, 761, 915, 923
MaeII	ACGT	3 cut(s)	111, 273, 680
MaeIII	GTNAC	3 cut(s)	86, 420, 1141
MalI	GATC	7 cut(s)	26, 254, 402, 633, 921, 1099, 1105
MboI	GATC	7 cut(s)	24, 252, 400, 631, 919, 1097, 1103
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	3 cut(s)	252, 400, 1103
MluCI	AATT	6 cut(s)	64, 350, 602, 880, 975, 1153
MlyI	GAGTC	3 cut(s)	170, 824, 1138
MmeI	TCCRAC	2 cut(s)	370, 1172
MnlI	CCTC	6 cut(s)	223, 377, 705, 753, 1123, 1132
MseI	TTAA	6 cut(s)	201, 405, 464, 723, 1074, 1190
MspA1I	CMGCKG	1 cut(s)	1238
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	1 cut(s)	690
MunI	CAATTG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	690
MvnI	CGCG	3 cut(s)	851, 872, 1238
MwoI	GCNNNNNNNGC	3 cut(s)	712, 869, 1224
NdeII	GATC	7 cut(s)	24, 252, 400, 631, 919, 1097, 1103
NlaIII	CATG	2 cut(s)	519, 1204
NlaIV	GGNNCC	2 cut(s)	241, 982
NmuCI	GTSAC	1 cut(s)	1141
NspV	TTCGAA	1 cut(s)	942
PfeI	GAWTC	6 cut(s)	323, 428, 592, 693, 782, 1078
PflFI	GACNNNGTC	1 cut(s)	845
PkrI	GCNGC	4 cut(s)	565, 865, 1024, 1027
PleI	GAGTC	3 cut(s)	169, 824, 1138
PpsI	GAGTC	3 cut(s)	169, 824, 1138
Ppu21I	YACGTR	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	2 cut(s)	241, 982
PspPI	GGNCC	1 cut(s)	981
PsrI	GAACNNNNNNTAC	2 cut(s)	536, 568
PstI	CTGCAG	1 cut(s)	1027
PsuI	RGATCY	3 cut(s)	252, 400, 1103
PsyI	GACNNNGTC	1 cut(s)	845
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SacII	CCGCGG	1 cut(s)	1239
SaqAI	TTAA	6 cut(s)	201, 405, 464, 723, 1074, 1190
SatI	GCNGC	4 cut(s)	564, 864, 1023, 1026
Sau3AI	GATC	7 cut(s)	24, 252, 400, 631, 919, 1097, 1103
Sau96I	GGNCC	1 cut(s)	981
SchI	GAGTC	3 cut(s)	170, 824, 1138
ScrFI	CCNGG	1 cut(s)	690
SfaNI	GCATC	2 cut(s)	319, 349
SfcI	CTRYAG	2 cut(s)	498, 1023
Sfr303I	CCGCGG	1 cut(s)	1239
SfuI	TTCGAA	1 cut(s)	942
SgrBI	CCGCGG	1 cut(s)	1239
SinI	GGWCC	1 cut(s)	981
SmlI	CTYRAG	3 cut(s)	158, 165, 404
SmoI	CTYRAG	3 cut(s)	158, 165, 404
SnaBI	TACGTA	1 cut(s)	112
Sse9I	AATT	6 cut(s)	64, 350, 602, 880, 975, 1153
SsiI	CCGC	5 cut(s)	851, 870, 1179, 1236, 1238
SspMI	CTAG	5 cut(s)	333, 425, 761, 915, 923
StyD4I	CCNGG	1 cut(s)	688
TaiI	ACGT	3 cut(s)	114, 276, 683
TaqI	TCGA	3 cut(s)	627, 942, 1172
TasI	AATT	6 cut(s)	64, 350, 602, 880, 975, 1153
TfiI	GAWTC	6 cut(s)	323, 428, 592, 693, 782, 1078
Tru1I	TTAA	6 cut(s)	201, 405, 464, 723, 1074, 1190
Tru9I	TTAA	6 cut(s)	201, 405, 464, 723, 1074, 1190
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	1 cut(s)	1141
TseI	GCWGC	4 cut(s)	563, 863, 1022, 1025
Tsp45I	GTSAC	1 cut(s)	1141
TspDTI	ATGAA	4 cut(s)	206, 332, 557, 874
TspRI	CASTG	1 cut(s)	703
Tth111I	GACNNNGTC	1 cut(s)	845
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	981
XapI	RAATTY	2 cut(s)	64, 880
XbaI	TCTAGA	1 cut(s)	922
XspI	CTAG	5 cut(s)	333, 425, 761, 915, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.