Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005020

Physical Location & Seq

Genomic Coordinates Forward (+)

16867618 .. 16868979

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017445

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTTAAGGTCATCCGCCCCAAGCAGCACTGGGATTATGAGGCCCTCACCGTCCAATGGGAGACCAAAACCAAGTGAAGGGGAGGCAAGAAAGCTTTTTCAGCAATTGATAGATGCAGTGGACTACTGTCACAATAAAGGTGTATATCACAGAGAACTAAAGCCAGAAAACTTGCTTTTGACTAGTAATGGAATGGAGATCTCAAAATATCTGATTTTGGACTTACCTGGTGACTTGTTGTCAACTAAATGTGGTTCTCCTAGCTATGTAGCTCCTGAAATACTTGTAAATAAGGGCTATCATGGAGCAGCTGCAGATGTTTCGTCTTGTGGAGTGATTCTTTTCGAATTACTTGTTGGTCATCTGCCATTTGATGACTCTAGCCCGATGAATTTGTACAAAAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0033554 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0098588 GO:0098805 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

137

Amino Acids

14.82

Weight (kDa)

6.89

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 134	6.3e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	28 - 135	3.4e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57630 AT5G57630 AT5G57630
fragaria_vesca	FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900
malus_domestica	MD13G1265500.v1.1
prunus_persica	Prupe.1G091700_v2.0.a1 Prupe.1G091700_v2.0.a1
pyrus_communis	pycom13g23580
rosa_chinensis	RchiOBHm_Chr4g0403561
rosa_laevigata	RLG00000008968 RLG00000017445
rosa_multiflora	Rmu_sc0007038.1_g000017
rosa_roxburghii	Rroxscaffold_2G00103160 Rroxscaffold_2G00117840 Rroxscaffold_5G00348210
rosa_rugosa	Rorug04G0044300 Rorug04G0044400
rosa_samantha	Rh1CG276800 Rh2CG037600 Rh4AG119500 Rh4BG112600 Rh4CG127500 Rh4DG112200 Rh5CG124600
rosa_wichuraiana	Rw4G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	391
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	56, 77
AhdI	GACNNNNNGTC	1 cut(s)	238
AhlI	ACTAGT	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	339, 371
AluBI	AGCT	4 cut(s)	94, 264, 272, 311
AluI	AGCT	4 cut(s)	94, 264, 272, 311
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	24, 308, 311
ApoI	RAATTY	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	39, 242
AsuII	TTCGAA	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	36, 298, 320
BcgI	CGANNNNNNTGC	2 cut(s)	303, 337
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	55
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	3 cut(s)	183, 261, 381
BfmI	CTRYAG	1 cut(s)	312
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	3 cut(s)	25, 309, 312
BlsI	GCNGC	3 cut(s)	26, 310, 313
Bme1390I	CCNGG	1 cut(s)	228
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	39
BoxI	GACNNNNGTC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 77
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	56, 77
BseNI	ACTGG	1 cut(s)	34
BseXI	GCAGC	3 cut(s)	36, 298, 320
BshFI	GGCC	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	56, 77
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	43
Bso31I	GGTCTC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	345
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	316
BspT104I	TTCGAA	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	51, 128
BstAUI	TGTACA	1 cut(s)	396
BstBI	TTCGAA	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	228
BstPAI	GACNNNNGTC	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	36, 298, 320
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	27, 123
Cfr13I	GGNCC	1 cut(s)	42
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	8 cut(s)	43, 94, 163, 264, 272, 297, 311, 384
CviKI_1	RGCY	8 cut(s)	43, 94, 163, 264, 272, 297, 311, 384
CviQI	GTAC	1 cut(s)	397
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
DriI	GACNNNNNGTC	1 cut(s)	238
Eam1105I	GACNNNNNGTC	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	4
Eco31I	GGTCTC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	226
FaeI	CATG	1 cut(s)	305
FaiI	YATR	4 cut(s)	38, 145, 267, 303
FatI	CATG	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	25, 309, 312
Fsp4HI	GCNGC	3 cut(s)	25, 309, 312
FspBI	CTAG	3 cut(s)	183, 261, 381
GluI	GCNGC	3 cut(s)	25, 309, 312
HaeIII	GGCC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	337, 377
HphI	GGTGA	2 cut(s)	39, 242
Hpy166II	GTNNAC	2 cut(s)	121, 243
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	2 cut(s)	121, 243
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	51, 128
HpyCH4V	TGCA	2 cut(s)	116, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	2 cut(s)	277, 305
LpnPI	CCDG	5 cut(s)	15, 177, 213, 240, 288
Lsp1109I	GCAGC	3 cut(s)	36, 298, 320
LweI	GCATC	1 cut(s)	103
MabI	ACCWGGT	1 cut(s)	226
MaeI	CTAG	3 cut(s)	183, 261, 381
MaeIII	GTNAC	2 cut(s)	128, 230
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MfeI	CAATTG	1 cut(s)	104
MflI	RGATCY	1 cut(s)	198
MluCI	AATT	3 cut(s)	104, 347, 391
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	3 cut(s)	33, 55, 76
MseI	TTAA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	228
MunI	CAATTG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	1 cut(s)	305
NmuCI	GTSAC	2 cut(s)	128, 230
NspV	TTCGAA	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	3 cut(s)	26, 310, 313
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PshAI	GACNNNNGTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	3 cut(s)	25, 309, 312
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	7 cut(s)	11, 96, 142, 229, 266, 274, 313
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	312
SfuI	TTCGAA	1 cut(s)	345
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	3 cut(s)	104, 347, 391
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	3 cut(s)	183, 261, 381
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	51, 128
TaqI	TCGA	1 cut(s)	345
TasI	AATT	3 cut(s)	104, 347, 391
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	2 cut(s)	34, 123
TseFI	GTSAC	2 cut(s)	128, 230
TseI	GCWGC	3 cut(s)	24, 308, 311
Tsp45I	GTSAC	2 cut(s)	128, 230
TspDTI	ATGAA	1 cut(s)	404
TspRI	CASTG	2 cut(s)	34, 123
XapI	RAATTY	1 cut(s)	391
XspI	CTAG	3 cut(s)	183, 261, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.