Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005020

Physical Location & Seq

Genomic Coordinates Reverse (-)

21065310 .. 21066783

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g23580.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGCTTATACAAAAAGATATCCAGAGCAGAATACACAATTCCGCGGTGGTTTACAGAAAGCCAGAAGAAGCTCATCTCCAGAATACTTGATCCAAATCCTGGAACGCGGATAACGATACCAGAGATTATCGAAAATGAATGGTTTCAACAAGATTATGTGGCCACATATGGAAACGATAGTGACGAAAAAATCTACCTTGATGATGTTAATGCTGCGTTTGATTCGATTGAGGAGAATGTGGCGGAGACAAAAATTCCAAAATCCTCAAGTTTTATAAATGCATTCCAATTGATAGCCATGTCAAATGATCTCGATCTGTCAGGTCTCTTCGAGGAACAGGACGAGAACAAGCAGAAAACAAGGATTGGATCCAAGCATACCATTACTGAAACCATGAAGAAAATAGAAGCTGCTGCAACAGATGCGAGCCTTTCAGTAGCAAGAACAAACAACTTCAGGATGAAAATGCATGCAAAACAGATTATGACTAGATGCTGTAGATCATATATTGACATATCAGCAGAGGTGATTGAAGTTGCTCCTACGAATTGTGTCGTTGAAATATCAAGATCTGCAGGGGAGCTTAGACTGTACAAAGAATTCTGTAAAAGTTTATCAAGTCAGCTGACAGACAAAGCCGCTGCTTCATCACCGAAGCAAGAATCTGAGGCTGTCAACACTGATAGAGAAAGTATCGAAGAAAAAGAACGCTCTGAGGAGACGAATTCCAGAACAATCAAAGACTACCGCGGTTATTCATCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0033554 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0098588 GO:0098805 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

257

Amino Acids

29.11

Weight (kDa)

5.18

Isoelectric Point (pI)

57.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57630 AT5G57630 AT5G57630
fragaria_vesca	FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900
malus_domestica	MD13G1265500.v1.1
prunus_persica	Prupe.1G091700_v2.0.a1 Prupe.1G091700_v2.0.a1
pyrus_communis	pycom13g23580
rosa_chinensis	RchiOBHm_Chr4g0403561
rosa_laevigata	RLG00000008968 RLG00000017445
rosa_multiflora	Rmu_sc0007038.1_g000017
rosa_roxburghii	Rroxscaffold_2G00103160 Rroxscaffold_2G00117840 Rroxscaffold_5G00348210
rosa_rugosa	Rorug04G0044300 Rorug04G0044400
rosa_samantha	Rh1CG276800 Rh2CG037600 Rh4AG119500 Rh4BG112600 Rh4CG127500 Rh4DG112200 Rh5CG124600
rosa_wichuraiana	Rw4G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccII	CGCG	3 cut(s)	46, 109, 753
AciI	CCGC	7 cut(s)	44, 46, 109, 245, 642, 751, 753
AclWI	GGATC	3 cut(s)	86, 366, 379
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	3 cut(s)	255, 602, 727
AcuI	CTGAAG	1 cut(s)	442
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	149, 536, 563
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	5 cut(s)	6, 73, 413, 586, 628
AluI	AGCT	5 cut(s)	6, 73, 413, 586, 628
Alw26I	GTCTC	3 cut(s)	242, 332, 716
AlwI	GGATC	3 cut(s)	86, 366, 379
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	4 cut(s)	215, 413, 416, 644
ApoI	RAATTY	3 cut(s)	255, 602, 727
Asp700I	GAANNNNTTC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	541, 645
BalI	TGGCCA	1 cut(s)	164
BamHI	GGATCC	1 cut(s)	371
BbvI	GCAGC	4 cut(s)	202, 400, 403, 631
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	3 cut(s)	242, 332, 716
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	2 cut(s)	499, 576
BglII	AGATCT	1 cut(s)	572
BisI	GCNGC	5 cut(s)	216, 414, 417, 642, 645
BlsI	GCNGC	5 cut(s)	217, 415, 418, 643, 646
Bme1390I	CCNGG	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	415, 485
BpmI	CTGGAG	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	253
BsaBI	GATNNNNATC	2 cut(s)	96, 315
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	44, 751
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse8I	GATNNNNATC	2 cut(s)	96, 315
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	44, 751
BseGI	GGATG	1 cut(s)	468
BseJI	GATNNNNATC	2 cut(s)	96, 315
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	660, 708
BseRI	GAGGAG	2 cut(s)	248, 734
BseXI	GCAGC	4 cut(s)	202, 400, 403, 631
Bsh1236I	CGCG	3 cut(s)	46, 109, 753
BshFI	GGCC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	3 cut(s)	242, 332, 716
BsmBI	CGTCTC	1 cut(s)	716
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	332
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	6 cut(s)	91, 310, 316, 371, 503, 572
BspACI	CCGC	7 cut(s)	44, 46, 109, 245, 642, 751, 753
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	661, 709
BspFNI	CGCG	3 cut(s)	46, 109, 753
BspLI	GGNNCC	1 cut(s)	373
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	3 cut(s)	86, 366, 379
BspTNI	GGTCTC	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	594
BssECI	CCNNGG	2 cut(s)	44, 751
BssMI	GATC	6 cut(s)	91, 310, 316, 371, 503, 572
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	594
Bst6I	CTCTTC	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	594
BstC8I	GCNNGC	2 cut(s)	430, 474
BstDEI	CTNAG	3 cut(s)	587, 669, 717
BstDSI	CCRYGG	2 cut(s)	44, 751
BstF5I	GGATG	1 cut(s)	468
BstFNI	CGCG	3 cut(s)	46, 109, 753
BstKTI	GATC	6 cut(s)	94, 313, 319, 374, 506, 575
BstMAI	GTCTC	3 cut(s)	242, 332, 716
BstMBI	GATC	6 cut(s)	91, 310, 316, 371, 503, 572
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	2 cut(s)	499, 576
BstUI	CGCG	3 cut(s)	46, 109, 753
BstV1I	GCAGC	4 cut(s)	202, 400, 403, 631
BstX2I	RGATCY	2 cut(s)	371, 572
BstYI	RGATCY	2 cut(s)	371, 572
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	2 cut(s)	44, 751
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	681
Cac8I	GCNNGC	2 cut(s)	430, 474
Cfr42I	CCGCGG	2 cut(s)	47, 754
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	3 cut(s)	301, 397, 473
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	3 cut(s)	587, 669, 717
DpnI	GATC	6 cut(s)	93, 312, 318, 373, 505, 574
DpnII	GATC	6 cut(s)	91, 310, 316, 371, 503, 572
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	442
EcoRI	GAATTC	2 cut(s)	602, 727
EcoRII	CCWGG	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	21
EcoT22I	ATGCAT	2 cut(s)	286, 474
Esp3I	CGTCTC	1 cut(s)	716
FaeI	CATG	3 cut(s)	304, 400, 476
FatI	CATG	3 cut(s)	300, 396, 472
FauNDI	CATATG	1 cut(s)	169
Fnu4HI	GCNGC	5 cut(s)	216, 414, 417, 642, 645
FokI	GGATG	1 cut(s)	475
Fsp4HI	GCNGC	5 cut(s)	216, 414, 417, 642, 645
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	5 cut(s)	216, 414, 417, 642, 645
GsuI	CTGGAG	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	164
Hin1II	CATG	3 cut(s)	304, 400, 476
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	2 cut(s)	224, 665
HphI	GGTGA	2 cut(s)	541, 645
Hpy166II	GTNNAC	2 cut(s)	54, 679
Hpy188I	TCNGA	2 cut(s)	670, 718
Hpy188III	TCNNGA	7 cut(s)	24, 81, 314, 460, 570, 732, 768
Hpy8I	GTNNAC	2 cut(s)	54, 679
HpyCH4III	ACNGT	1 cut(s)	594
HpyCH4V	TGCA	5 cut(s)	284, 419, 472, 476, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	3 cut(s)	587, 669, 717
Hsp92II	CATG	3 cut(s)	304, 400, 476
KspI	CCGCGG	2 cut(s)	47, 754
Kzo9I	GATC	6 cut(s)	91, 310, 316, 371, 503, 572
LmnI	GCTCC	2 cut(s)	547, 583
Lsp1109I	GCAGC	4 cut(s)	202, 400, 403, 631
LweI	GCATC	2 cut(s)	415, 485
MaeI	CTAG	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	6 cut(s)	93, 312, 318, 373, 505, 574
MboI	GATC	6 cut(s)	91, 310, 316, 371, 503, 572
MboII	GAAGA	4 cut(s)	79, 322, 412, 713
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	2 cut(s)	371, 572
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	6 cut(s)	39, 255, 290, 550, 602, 727
MluNI	TGGCCA	1 cut(s)	164
MnlI	CCTC	6 cut(s)	226, 277, 328, 520, 664, 712
Mox20I	TGGCCA	1 cut(s)	164
Mph1103I	ATGCAT	2 cut(s)	286, 474
MroXI	GAANNNNTTC	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	164
MspA1I	CMGCKG	4 cut(s)	46, 628, 644, 753
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	102
MvnI	CGCG	3 cut(s)	46, 109, 753
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	6 cut(s)	91, 310, 316, 371, 503, 572
NlaIII	CATG	3 cut(s)	304, 400, 476
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	2 cut(s)	286, 474
NspI	RCATGY	1 cut(s)	476
PaeI	GCATGC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	2 cut(s)	113, 183
PctI	GAATGC	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	224, 665
PflMI	CCANNNNNTGG	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	5 cut(s)	217, 415, 418, 643, 646
PsiI	TTATAA	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	371, 572
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
SacII	CCGCGG	2 cut(s)	47, 754
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	5 cut(s)	216, 414, 417, 642, 645
Sau3AI	GATC	6 cut(s)	91, 310, 316, 371, 503, 572
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	8 cut(s)	8, 75, 201, 328, 415, 531, 588, 630
SfaNI	GCATC	2 cut(s)	415, 485
SfcI	CTRYAG	2 cut(s)	499, 576
Sfr303I	CCGCGG	2 cut(s)	47, 754
SgrBI	CCGCGG	2 cut(s)	47, 754
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	6 cut(s)	39, 255, 290, 550, 602, 727
SsiI	CCGC	7 cut(s)	44, 46, 109, 245, 642, 751, 753
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	594
TaqI	TCGA	5 cut(s)	132, 227, 315, 333, 699
TasI	AATT	6 cut(s)	39, 255, 290, 550, 602, 727
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	2 cut(s)	224, 665
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	4 cut(s)	215, 413, 416, 644
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	5 cut(s)	153, 413, 479, 639, 750
TspRI	CASTG	1 cut(s)	688
Van91I	CCANNNNNTGG	1 cut(s)	101
XapI	RAATTY	3 cut(s)	255, 602, 727
XceI	RCATGY	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	1 cut(s)	492
Zsp2I	ATGCAT	2 cut(s)	286, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.