Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005020

Physical Location & Seq

Genomic Coordinates Reverse (-)

20200157 .. 20203664

Gene Structure 3508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGGATTTGCCAACAACATAGGCAAGTACCAGCTGGGGCGGACGATCGGAGAAGGTACTTTTGCCAAGGTGAAGCTGGCACTCGACAGCACTAATGGAAAGTATGTTGCCATCAAGATCCTCGATAAGCATATGGTCATGGAAACCAATCTCATGAATCAGGTGCAGAGAGAAATTAGAACAATGAAGCTTCTAAATCACTCCAACATTGTGCGCATACATGAGGTTATTGGTACAAAGACAAAAATCTACATAGTAATGGAATATGTATCTGGGGGACAACTCTCAGACAAATTGTTGTACTCCAAAACATTAAGTGAAGGGGAGGCAAGAAAGATTTTTCAGCAATTGATAGATGCAGTGGACTACTGTCACAACAAAGGTGTATATCACAGAGATCTAAAGCCTGAAAACTTGCTTTTGACAAGTAATGGAGACCTCAAAATATCTGATTTTGGACTTAGCGCATTGCGTAAGCCTGGTGATTTGTTGTCAACTAAATGTGGTTCTCCAAGCTACGTAGCTCCTGAGCTACTTGCAAATAAGGGCTATGATGGAGCAGCTGCAGATGTTTGGTCTTGTGGAGTGATTCTTTTCGAATTACTTGCTGGTCATCTGCCATTTGATGACTCTAGCCTGATGAATTTGTACAAAAAGCGACTAACAATACCAGAAATTATAGAAAATGAATGGTTCCAAAAGGATTACATACCTACATGTGGAAATGATAGTGACGAGAAAATCTACTTAGATGATGTCAATGCTGCATTTGATTCAATCGAGTATAACAATAAGCAAAAAATAAGGCTTGGATCCCAGCACACAATCAATGAAACAATGAAGAAAATCGAAGCTGCTGCAATGGATGTGAGTCTTTCAGTAGCAAGAACAAACAACTTTAAGGTGATCGAAGTGGCTCCCGCACATTGTGTTGTAGAAATATCAAGATCCGCAGGGGAGCTTGGACCATACAACGAATTCTGTAAGAGTCTAACAAGTCAGCTGACAGAGGAATTAGGTGATTCATCACAAATGCAAGAGTCTGAGGTACACCACATCGAAAGCAAAAGTATTCAAGAAAGTGAAGGGTCGGAGAAGACGAAGACAAAATCCACGAGAATCGATGATCACCGTGGTTATTCATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0033554 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0098588 GO:0098805 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

383

Amino Acids

42.76

Weight (kDa)

5.93

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 223	1.2e-68	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 218	4.7e-38	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	38 - 155	8.5e-09	ABC1 atypical kinase-like domain
Kinase-like	PF14531	113 - 210	7.8e-06	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57630 AT5G57630 AT5G57630
fragaria_vesca	FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900 FvH4_4g08900
malus_domestica	MD13G1265500.v1.1
prunus_persica	Prupe.1G091700_v2.0.a1 Prupe.1G091700_v2.0.a1
pyrus_communis	pycom13g23580
rosa_chinensis	RchiOBHm_Chr4g0403561
rosa_laevigata	RLG00000008968 RLG00000017445
rosa_multiflora	Rmu_sc0007038.1_g000017
rosa_roxburghii	Rroxscaffold_2G00103160 Rroxscaffold_2G00117840 Rroxscaffold_5G00348210
rosa_rugosa	Rorug04G0044300 Rorug04G0044400
rosa_samantha	Rh1CG276800 Rh2CG037600 Rh4AG119500 Rh4BG112600 Rh4CG127500 Rh4DG112200 Rh5CG124600
rosa_wichuraiana	Rw4G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	215
AciI	CCGC	3 cut(s)	40, 921, 951
AclWI	GGATC	4 cut(s)	112, 807, 820, 942
AcsI	RAATTY	2 cut(s)	643, 977
AdeI	CACNNNGTG	1 cut(s)	929
AfaI	GTAC	6 cut(s)	29, 58, 235, 302, 650, 1050
AfiI	CCNNNNNNNGG	1 cut(s)	719
AflIII	ACRYGT	1 cut(s)	716
AgsI	TTSAA	2 cut(s)	777, 1076
AjnI	CCWGG	1 cut(s)	478
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	4 cut(s)	112, 807, 820, 942
ApeKI	GCWGC	5 cut(s)	560, 563, 764, 854, 857
ApoI	RAATTY	2 cut(s)	643, 977
AspLEI	GCGC	2 cut(s)	216, 467
AspS9I	GGNCC	1 cut(s)	965
AsuHPI	GGTGA	5 cut(s)	82, 494, 916, 1031, 1121
AsuII	TTCGAA	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	965
BamHI	GGATCC	1 cut(s)	812
BauI	CACGAG	1 cut(s)	1114
BbsI	GAAGAC	2 cut(s)	1103, 1109
BbvI	GCAGC	5 cut(s)	550, 572, 751, 841, 844
BccI	CCATC	2 cut(s)	119, 548
BcgI	CGANNNNNNTGC	4 cut(s)	587, 621, 839, 873
BciT130I	CCWGG	1 cut(s)	480
BclI	TGATCA	1 cut(s)	1126
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	564
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	5 cut(s)	561, 564, 765, 855, 858
BlsI	GCNGC	5 cut(s)	562, 565, 766, 856, 859
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	1 cut(s)	965
BmgT120I	GGNCC	1 cut(s)	965
BmiI	GGNNCC	3 cut(s)	695, 814, 918
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	1 cut(s)	346
BoxI	GACNNNNGTC	1 cut(s)	369
BpiI	GAAGAC	2 cut(s)	1103, 1109
Bpu10I	CCTNAGC	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	1122
BsaAI	YACGTR	1 cut(s)	520
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	2 cut(s)	66, 1132
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse3DI	GCAATG	2 cut(s)	467, 867
BseBI	CCWGG	1 cut(s)	480
BseCI	ATCGAT	1 cut(s)	1122
BseDI	CCNNGG	2 cut(s)	66, 1132
BseGI	GGATG	1 cut(s)	871
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMI	GCAATG	2 cut(s)	467, 867
BseMII	CTCAG	3 cut(s)	300, 519, 1035
BseXI	GCAGC	5 cut(s)	550, 572, 751, 841, 844
BseYI	CCCAGC	2 cut(s)	34, 816
BsgI	GTGCAG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	48
BshVI	ATCGAT	1 cut(s)	1122
BsiEI	CGRYCG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	291
Bso31I	GGTCTC	1 cut(s)	429
Bsp119I	TTCGAA	1 cut(s)	597
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	7 cut(s)	45, 117, 397, 812, 906, 947, 1126
BspACI	CCGC	3 cut(s)	40, 921, 951
BspCNI	CTCAG	3 cut(s)	299, 520, 1036
BspDI	ATCGAT	1 cut(s)	1122
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	695, 814, 918
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	4 cut(s)	112, 807, 820, 942
BspT104I	TTCGAA	1 cut(s)	597
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	2 cut(s)	467, 867
BsrGI	TGTACA	1 cut(s)	648
BssECI	CCNNGG	2 cut(s)	66, 1132
BssMI	GATC	7 cut(s)	45, 117, 397, 812, 906, 947, 1126
BssSI	CACGAG	1 cut(s)	1114
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	1114
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	371, 1133
BstAUI	TGTACA	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	520
BstBI	TTCGAA	1 cut(s)	597
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	5 cut(s)	286, 461, 528, 748, 1044
BstDSI	CCRYGG	1 cut(s)	1132
BstF5I	GGATG	1 cut(s)	871
BstHHI	GCGC	2 cut(s)	216, 467
BstKTI	GATC	7 cut(s)	48, 120, 400, 815, 909, 950, 1129
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	7 cut(s)	45, 117, 397, 812, 906, 947, 1126
BstMCI	CGRYCG	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	720
BstPAI	GACNNNNGTC	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	564
BstSNI	TACGTA	1 cut(s)	520
BstV1I	GCAGC	5 cut(s)	550, 572, 751, 841, 844
BstV2I	GAAGAC	2 cut(s)	1103, 1109
BstX2I	RGATCY	4 cut(s)	117, 397, 812, 947
BstYI	RGATCY	4 cut(s)	117, 397, 812, 947
Bsu15I	ATCGAT	1 cut(s)	1122
BsuTUI	ATCGAT	1 cut(s)	1122
BtgI	CCRYGG	1 cut(s)	1132
BtsCI	GGATG	1 cut(s)	871
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	153
CfoI	GCGC	2 cut(s)	216, 467
Cfr13I	GGNCC	1 cut(s)	965
ClaI	ATCGAT	1 cut(s)	1122
Csp6I	GTAC	6 cut(s)	28, 57, 234, 301, 649, 1049
CviAII	CATG	4 cut(s)	139, 154, 221, 717
CviQI	GTAC	6 cut(s)	28, 57, 234, 301, 649, 1049
DdeI	CTNAG	5 cut(s)	286, 461, 528, 748, 1044
DpnI	GATC	7 cut(s)	47, 119, 399, 814, 908, 949, 1128
DpnII	GATC	7 cut(s)	45, 117, 397, 812, 906, 947, 1126
DraIII	CACNNNGTG	1 cut(s)	929
EciI	GGCGGA	1 cut(s)	55
Eco105I	TACGTA	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	965
EcoRI	GAATTC	1 cut(s)	977
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	142, 157, 224, 720
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	4 cut(s)	138, 153, 220, 716
FauI	CCCGC	1 cut(s)	928
FauNDI	CATATG	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	1126
Fnu4HI	GCNGC	5 cut(s)	561, 564, 765, 855, 858
FokI	GGATG	1 cut(s)	878
Fsp4HI	GCNGC	5 cut(s)	561, 564, 765, 855, 858
FspAI	RTGCGCAY	1 cut(s)	215
FspBI	CTAG	1 cut(s)	633
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	2 cut(s)	215, 466
GluI	GCNGC	5 cut(s)	561, 564, 765, 855, 858
GsaI	CCCAGC	2 cut(s)	38, 820
HhaI	GCGC	2 cut(s)	216, 467
Hin1II	CATG	4 cut(s)	142, 157, 224, 720
Hin6I	GCGC	2 cut(s)	214, 465
HinP1I	GCGC	2 cut(s)	214, 465
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	9 cut(s)	157, 589, 629, 773, 871, 988, 1022, 1040, 1119
HphI	GGTGA	5 cut(s)	82, 494, 916, 1031, 1121
Hpy166II	GTNNAC	3 cut(s)	364, 495, 1051
Hpy188I	TCNGA	5 cut(s)	50, 289, 451, 1045, 1093
Hpy188III	TCNNGA	6 cut(s)	115, 154, 527, 945, 1076, 1149
Hpy8I	GTNNAC	3 cut(s)	364, 495, 1051
HpyAV	CCTTC	3 cut(s)	47, 314, 1079
HpyCH4III	ACNGT	2 cut(s)	371, 1133
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	7 cut(s)	166, 359, 539, 566, 767, 860, 1036
HpyF3I	CTNAG	5 cut(s)	286, 461, 528, 748, 1044
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	4 cut(s)	142, 157, 224, 720
HspAI	GCGC	2 cut(s)	214, 465
Ksp22I	TGATCA	1 cut(s)	1126
Kzo9I	GATC	7 cut(s)	45, 117, 397, 812, 906, 947, 1126
LmnI	GCTCC	4 cut(s)	529, 557, 922, 958
Lsp1109I	GCAGC	5 cut(s)	550, 572, 751, 841, 844
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	371, 731
MalI	GATC	7 cut(s)	47, 119, 399, 814, 908, 949, 1128
MboI	GATC	7 cut(s)	45, 117, 397, 812, 906, 947, 1126
MboII	GAAGA	4 cut(s)	853, 1108, 1114, 1137
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	4 cut(s)	117, 397, 812, 947
MluCI	AATT	8 cut(s)	174, 293, 347, 599, 643, 675, 977, 1013
MlyI	GAGTC	4 cut(s)	623, 880, 997, 1049
MmeI	TCCRAC	2 cut(s)	228, 1071
MnlI	CCTC	6 cut(s)	131, 217, 319, 449, 1003, 1039
MseI	TTAA	2 cut(s)	314, 900
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	3 cut(s)	34, 563, 1003
MspR9I	CCNGG	1 cut(s)	480
MunI	CAATTG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	480
NdeI	CATATG	1 cut(s)	132
NdeII	GATC	7 cut(s)	45, 117, 397, 812, 906, 947, 1126
NlaIII	CATG	4 cut(s)	142, 157, 224, 720
NlaIV	GGNNCC	3 cut(s)	695, 814, 918
NmuCI	GTSAC	2 cut(s)	371, 731
NsbI	TGCGCA	1 cut(s)	215
NspI	RCATGY	1 cut(s)	720
NspV	TTCGAA	1 cut(s)	597
PagI	TCATGA	1 cut(s)	153
PciI	ACATGT	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	1097
PfeI	GAWTC	5 cut(s)	157, 589, 773, 1022, 1119
PkrI	GCNGC	5 cut(s)	562, 565, 766, 856, 859
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	4 cut(s)	623, 879, 996, 1048
PpsI	GAGTC	4 cut(s)	623, 879, 996, 1048
Ppu21I	YACGTR	1 cut(s)	520
PscI	ACATGT	1 cut(s)	716
PshAI	GACNNNNGTC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	478
PspFI	CCCAGC	2 cut(s)	34, 816
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	3 cut(s)	695, 814, 918
PspPI	GGNCC	1 cut(s)	965
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	4 cut(s)	117, 397, 812, 947
PvuI	CGATCG	1 cut(s)	48
PvuII	CAGCTG	3 cut(s)	34, 563, 1003
RsaI	GTAC	6 cut(s)	29, 58, 235, 302, 650, 1050
RsaNI	GTAC	6 cut(s)	28, 57, 234, 301, 649, 1049
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	314, 900
SatI	GCNGC	5 cut(s)	561, 564, 765, 855, 858
Sau3AI	GATC	7 cut(s)	45, 117, 397, 812, 906, 947, 1126
Sau96I	GGNCC	1 cut(s)	965
SchI	GAGTC	4 cut(s)	623, 880, 997, 1049
ScrFI	CCNGG	1 cut(s)	480
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	564
SfuI	TTCGAA	1 cut(s)	597
SinI	GGWCC	1 cut(s)	965
SmiMI	CAYNNNNRTG	1 cut(s)	257
SnaBI	TACGTA	1 cut(s)	520
Sse9I	AATT	8 cut(s)	174, 293, 347, 599, 643, 675, 977, 1013
SsiI	CCGC	3 cut(s)	40, 921, 951
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	371, 1133
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	8 cut(s)	84, 123, 597, 780, 849, 909, 1059, 1122
TasI	AATT	8 cut(s)	174, 293, 347, 599, 643, 675, 977, 1013
TatI	WGTACW	2 cut(s)	300, 648
TfiI	GAWTC	5 cut(s)	157, 589, 773, 1022, 1119
Tru1I	TTAA	2 cut(s)	314, 900
Tru9I	TTAA	2 cut(s)	314, 900
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	2 cut(s)	371, 731
TseI	GCWGC	5 cut(s)	560, 563, 764, 854, 857
Tsp45I	GTSAC	2 cut(s)	371, 731
TspDTI	ATGAA	8 cut(s)	170, 200, 656, 702, 846, 854, 1014, 1131
TspRI	CASTG	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	965
XapI	RAATTY	2 cut(s)	643, 977
XceI	RCATGY	1 cut(s)	720
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.