Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001309

Physical Location & Seq

Genomic Coordinates Reverse (-)

6870519 .. 6872700

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0044400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTAGCTACCAACAGAAATGAGGTTCCAACCAACTATGACAGAAAACATGAACTAAAAGCTTTTGATGATACAAAGGAAGGTGTTAAAGGCCTTGTTGATGCTGGCATAACCGAGATTCCTCGAATTTTTTATCATCCACCTGATGAATATTCCATTGACAATACCTCTGATGCAGAAGAAGTCCGGTTTAGCATTCCAGTCATAGACCTCGAAGGCCTCTTCGATCCAACTAAAGGAAAGGAGATTGTTGCAGCAGTTGGAGAAGCATCAGCGACTTGGGGCTTCTTTCAAATTTCCAATCATGGAATACCTTTTGATGTGCTGGAGGAGATTAAGGATGGGGTACGTGGGTTTTATGAGCAGGATACTGAAATGAAGAAACAGTTTTATACTCGTGATCACTCCAGTGGTCCAGTCGTCTACAACAGCAACTTTGATCTGTATAGTGCACCGGTAACTAATTGGAGGGATAGTTTTTTGTGTTATATGGCTCCTACTCCTCCTAAGACAGAAGACTTGCCAGAAGTATGCAGAGAAATCCTTATTGAATACTCAAAGCAAGTAATGAAGTTGGGGAAGCTGTTGTTTGAGTTGTTGTCCGAGGCTCTTGGGCTAAATCCAAGTCACTTGAATGACATAGATTGCAGTGAGGGGCTTCTGGTTTTAGGGCATTACTATCCTGCTTGTCCACAACCAGAGTTAACAATAGGCACAAGCAAGCATGCAGATAATACCTTCATGACTGTCCTTCTGCAAGACAATATTGGTGGTCTTCAAGTCCTTCACCAGAACAAATGGATTGATGTACCCCATGTACCGGGTGCTTTAGTGGTTAACATTGGAGATCTTGTACAGCTTATATCAAATGATAGATTCAAGAGTGTAGAGCACAGGGTACTGGCAAACCATAGAGGTCCTAGGGTATCAGTTGCAAGCTTTTTCAGCACAGGAATGCTGCCATTGACAAAGCTCTACGGACCAATCAAGGAGTTATTATCAGAAGACTATCCTCCAAAGTACAGGGAGACTACTGTTAGGGACTATATTGCCTACTTCGATGAGAAAGGCCTTGATGGTACCTCTGCTTTGGCTCACTTTAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0033554 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071704 GO:0098588 GO:0098805 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

369

Amino Acids

41.5

Weight (kDa)

5.03

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	66 - 166	6.7e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	223 - 316	7.6e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01010 AT5G01010 AT5G01010 AT5G01010 AT5G01010
fragaria_vesca	FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090
malus_domestica	MD04G1181300.v1.1 MD12G1196200.v1.1
prunus_persica	Prupe.6G300700_v2.0.a1
pyrus_communis	pycom04g16010 pycom12g18240
rosa_chinensis	RchiOBHm_Chr1g0381551 RchiOBHm_Chr2g0142661 RchiOBHm_Chr3g0459311 RchiOBHm_Chr3g0481991 RchiOBHm_Chr3g0494831 RchiOBHm_Chr4g0423451
rosa_laevigata	RLG00000002838 RLG00000008948 RLG00000025092 RLG00000035380
rosa_multiflora	Rmu_sc0016591.1_g000001 Rmu_sc0031252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024690 Rroxscaffold_4G00328920 Rroxscaffold_6G00420280 Rroxscaffold_7G00187060
rosa_rugosa	Rorug03G0035200 Rorug03G0035300 Rorug03G0185700 Rorug03G0335300 Rorug04G0044400 Rorug04G0065300
rosa_samantha	Rh2BG436600 Rh3AG093200 Rh3AG317300 Rh3BG096200 Rh3CG097400 Rh3DG096800 Rh5AG160100 Rh5AG165100 Rh6BG240800
rosa_wichuraiana	Rw2G034970 Rw2G047080 Rw3G008020 Rw5G032380 Rw5G032430 Rw6G015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1079
AccB1I	GGYRCC	1 cut(s)	1079
AccI	GTMKAC	1 cut(s)	423
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	2 cut(s)	126, 294
AfaI	GTAC	7 cut(s)	348, 810, 819, 855, 900, 1022, 1081
AfiI	CCNNNNNNNGG	2 cut(s)	236, 820
AgeI	ACCGGT	1 cut(s)	454
AgsI	TTSAA	5 cut(s)	293, 551, 634, 779, 880
AleI	CACNNNNGTG	1 cut(s)	408
AluBI	AGCT	7 cut(s)	8, 62, 583, 859, 939, 973, 1105
AluI	AGCT	7 cut(s)	8, 62, 583, 859, 939, 973, 1105
Alw21I	GWGCWC	2 cut(s)	454, 894
Alw26I	GTCTC	1 cut(s)	1022
Alw44I	GTGCAC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	3 cut(s)	91, 217, 1069
ApaLI	GTGCAC	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	254, 958
ApoI	RAATTY	2 cut(s)	126, 294
AsiGI	ACCGGT	1 cut(s)	454
Asp718I	GGTACC	1 cut(s)	1079
AspA2I	CCTAGG	1 cut(s)	920
AspS9I	GGNCC	3 cut(s)	413, 917, 980
AsuC2I	CCSGG	1 cut(s)	822
AsuHPI	GGTGA	1 cut(s)	779
AvaII	GGWCC	3 cut(s)	413, 917, 980
AvrII	CCTAGG	1 cut(s)	920
BaeGI	GKGCMC	1 cut(s)	454
BaeI	ACNNNNGTAYC	2 cut(s)	338, 371
BanI	GGYRCC	1 cut(s)	1079
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	3 cut(s)	522, 767, 1011
Bbv12I	GWGCWC	2 cut(s)	454, 894
BbvI	GCAGC	2 cut(s)	266, 945
BccI	CCATC	2 cut(s)	335, 1070
BciVI	GTATCC	1 cut(s)	361
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	822
BcoDI	GTCTC	1 cut(s)	1022
BfaI	CTAG	1 cut(s)	921
BfuI	GTATCC	1 cut(s)	361
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	2 cut(s)	255, 959
BlnI	CCTAGG	1 cut(s)	920
BlsI	GCNGC	2 cut(s)	256, 960
Bme1390I	CCNGG	1 cut(s)	822
Bme18I	GGWCC	3 cut(s)	413, 917, 980
BmgT120I	GGNCC	3 cut(s)	413, 917, 980
BmiI	GGNNCC	3 cut(s)	27, 495, 1081
BmrFI	CCNGG	1 cut(s)	822
BmsI	GCATC	3 cut(s)	91, 163, 278
BpiI	GAAGAC	3 cut(s)	522, 767, 1011
BpmI	CTGGAG	2 cut(s)	347, 391
BpuMI	CCSGG	1 cut(s)	822
BsaAI	YACGTR	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	603, 920
BsaWI	WCCGGW	2 cut(s)	186, 454
BsaXI	ACNNNNNCTCC	4 cut(s)	460, 490, 837, 867
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 820
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	4 cut(s)	200, 408, 416, 906
BseDI	CCNNGG	2 cut(s)	603, 920
BseGI	GGATG	2 cut(s)	136, 346
BseLI	CCNNNNNNNGG	2 cut(s)	236, 820
BseNI	ACTGG	4 cut(s)	200, 408, 416, 906
BseRI	GAGGAG	2 cut(s)	344, 492
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	2 cut(s)	266, 945
BshFI	GGCC	3 cut(s)	93, 219, 1071
BshNI	GGYRCC	1 cut(s)	1079
BshTI	ACCGGT	1 cut(s)	454
BsiHKAI	GWGCWC	2 cut(s)	454, 894
BsiSI	CCGG	3 cut(s)	187, 455, 821
BslFI	GGGAC	1 cut(s)	1055
BslI	CCNNNNNNNGG	2 cut(s)	236, 820
BsmAI	GTCTC	1 cut(s)	1022
BsmFI	GGGAC	1 cut(s)	1055
BsmI	GAATGC	2 cut(s)	195, 960
BsnI	GGCC	3 cut(s)	93, 219, 1071
Bsp1286I	GDGCHC	2 cut(s)	454, 894
Bsp1407I	TGTACA	1 cut(s)	853
Bsp143I	GATC	4 cut(s)	226, 400, 439, 847
BspANI	GGCC	3 cut(s)	93, 219, 1071
BspHI	TCATGA	1 cut(s)	741
BspLI	GGNNCC	3 cut(s)	27, 495, 1081
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	1079
BsrFI	RCCGGY	1 cut(s)	454
BsrGI	TGTACA	1 cut(s)	853
BsrI	ACTGG	4 cut(s)	200, 408, 416, 906
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	603, 920
BssMI	GATC	4 cut(s)	226, 400, 439, 847
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	920
Bst2BI	CACGAG	1 cut(s)	396
Bst4CI	ACNGT	3 cut(s)	387, 748, 1036
Bst6I	CTCTTC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	853
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	4 cut(s)	106, 722, 726, 937
BstDEI	CTNAG	1 cut(s)	507
BstF5I	GGATG	2 cut(s)	136, 346
BstKTI	GATC	4 cut(s)	229, 403, 442, 850
BstMAI	GTCTC	1 cut(s)	1022
BstMBI	GATC	4 cut(s)	226, 400, 439, 847
BstMWI	GCNNNNNNNGC	1 cut(s)	945
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	820
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	266, 945
BstV2I	GAAGAC	3 cut(s)	522, 767, 1011
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	93, 219, 1071
BtsCI	GGATG	2 cut(s)	136, 346
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	2 cut(s)	415, 655
Cac8I	GCNNGC	4 cut(s)	106, 722, 726, 937
CciI	TCATGA	1 cut(s)	741
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	3 cut(s)	413, 917, 980
Csp6I	GTAC	7 cut(s)	347, 809, 818, 854, 899, 1021, 1080
CspAI	ACCGGT	1 cut(s)	454
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviAII	CATG	5 cut(s)	50, 305, 725, 742, 815
CviQI	GTAC	7 cut(s)	347, 809, 818, 854, 899, 1021, 1080
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	4 cut(s)	228, 402, 441, 849
DpnII	GATC	4 cut(s)	226, 400, 439, 847
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	920
Eco147I	AGGCCT	3 cut(s)	93, 219, 1071
Eco47I	GGWCC	3 cut(s)	413, 917, 980
EcoO109I	RGGNCCY	1 cut(s)	917
EcoT14I	CCWWGG	1 cut(s)	920
ErhI	CCWWGG	1 cut(s)	920
FaeI	CATG	5 cut(s)	53, 308, 728, 745, 818
FaqI	GGGAC	1 cut(s)	1055
FatI	CATG	5 cut(s)	49, 304, 724, 741, 814
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	255, 959
FokI	GGATG	2 cut(s)	123, 353
Fsp4HI	GCNGC	2 cut(s)	255, 959
FspBI	CTAG	1 cut(s)	921
GluI	GCNGC	2 cut(s)	255, 959
GsuI	CTGGAG	2 cut(s)	347, 391
HaeIII	GGCC	3 cut(s)	93, 219, 1071
HapII	CCGG	3 cut(s)	187, 455, 821
Hin1II	CATG	5 cut(s)	53, 308, 728, 745, 818
HincII	GTYRAC	2 cut(s)	705, 838
HindII	GTYRAC	2 cut(s)	705, 838
HindIII	AAGCTT	3 cut(s)	60, 937, 1103
HinfI	GANTC	2 cut(s)	118, 876
HpaI	GTTAAC	2 cut(s)	705, 838
HpaII	CCGG	3 cut(s)	187, 455, 821
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	5 cut(s)	424, 452, 692, 705, 838
Hpy188I	TCNGA	3 cut(s)	172, 604, 1003
Hpy188III	TCNNGA	3 cut(s)	398, 742, 880
Hpy8I	GTNNAC	5 cut(s)	424, 452, 692, 705, 838
HpyAV	CCTTC	5 cut(s)	74, 209, 748, 761, 794
HpyCH4III	ACNGT	3 cut(s)	387, 748, 1036
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	8 cut(s)	176, 254, 452, 534, 648, 728, 757, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	945
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	5 cut(s)	53, 308, 728, 745, 818
KpnI	GGTACC	1 cut(s)	1083
Ksp22I	TGATCA	1 cut(s)	400
KspAI	GTTAAC	2 cut(s)	705, 838
Kzo9I	GATC	4 cut(s)	226, 400, 439, 847
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	2 cut(s)	266, 945
LweI	GCATC	3 cut(s)	91, 163, 278
MaeI	CTAG	1 cut(s)	921
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	2 cut(s)	457, 626
MalI	GATC	4 cut(s)	228, 402, 441, 849
MboI	GATC	4 cut(s)	226, 400, 439, 847
MboII	GAAGA	6 cut(s)	191, 214, 391, 527, 767, 1016
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	2 cut(s)	454, 894
MluCI	AATT	3 cut(s)	126, 294, 463
MmeI	TCCRAC	3 cut(s)	53, 241, 254
MseI	TTAA	5 cut(s)	87, 336, 704, 837, 1101
MslI	CAYNNNNRTG	3 cut(s)	408, 633, 953
MspI	CCGG	3 cut(s)	187, 455, 821
MspR9I	CCNGG	1 cut(s)	822
Mva1269I	GAATGC	2 cut(s)	195, 960
MwoI	GCNNNNNNNGC	1 cut(s)	945
NciI	CCSGG	1 cut(s)	822
NdeII	GATC	4 cut(s)	226, 400, 439, 847
NlaIII	CATG	5 cut(s)	53, 308, 728, 745, 818
NlaIV	GGNNCC	3 cut(s)	27, 495, 1081
NmuCI	GTSAC	1 cut(s)	626
NspI	RCATGY	1 cut(s)	728
OliI	CACNNNNGTG	1 cut(s)	408
PaeI	GCATGC	1 cut(s)	728
PagI	TCATGA	1 cut(s)	741
PceI	AGGCCT	3 cut(s)	93, 219, 1071
PctI	GAATGC	2 cut(s)	195, 960
PfeI	GAWTC	2 cut(s)	118, 876
PinAI	ACCGGT	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	256, 960
Ppu21I	YACGTR	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	917
Psp5II	RGGWCCY	1 cut(s)	917
PspN4I	GGNNCC	3 cut(s)	27, 495, 1081
PspPI	GGNCC	3 cut(s)	413, 917, 980
PspPPI	RGGWCCY	1 cut(s)	917
PsuI	RGATCY	1 cut(s)	847
RsaI	GTAC	7 cut(s)	348, 810, 819, 855, 900, 1022, 1081
RsaNI	GTAC	7 cut(s)	347, 809, 818, 854, 899, 1021, 1080
RseI	CAYNNNNRTG	3 cut(s)	408, 633, 953
SaqAI	TTAA	5 cut(s)	87, 336, 704, 837, 1101
SatI	GCNGC	2 cut(s)	255, 959
Sau3AI	GATC	4 cut(s)	226, 400, 439, 847
Sau96I	GGNCC	3 cut(s)	413, 917, 980
ScrFI	CCNGG	1 cut(s)	822
SduI	GDGCHC	2 cut(s)	454, 894
SfaNI	GCATC	3 cut(s)	91, 163, 278
SinI	GGWCC	3 cut(s)	413, 917, 980
SmiMI	CAYNNNNRTG	3 cut(s)	408, 633, 953
SphI	GCATGC	1 cut(s)	728
Sse9I	AATT	3 cut(s)	126, 294, 463
SseBI	AGGCCT	3 cut(s)	93, 219, 1071
SspI	AATATT	2 cut(s)	152, 766
SspMI	CTAG	1 cut(s)	921
StuI	AGGCCT	3 cut(s)	93, 219, 1071
StyD4I	CCNGG	1 cut(s)	820
StyI	CCWWGG	1 cut(s)	920
TaaI	ACNGT	3 cut(s)	387, 748, 1036
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	4 cut(s)	124, 213, 225, 1059
TasI	AATT	3 cut(s)	126, 294, 463
TatI	WGTACW	2 cut(s)	853, 1020
TfiI	GAWTC	2 cut(s)	118, 876
Tru1I	TTAA	5 cut(s)	87, 336, 704, 837, 1101
Tru9I	TTAA	5 cut(s)	87, 336, 704, 837, 1101
TscAI	CASTG	2 cut(s)	415, 655
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	2 cut(s)	254, 958
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	5 cut(s)	66, 162, 392, 584, 730
TspGWI	ACGGA	1 cut(s)	993
TspRI	CASTG	2 cut(s)	415, 655
VneI	GTGCAC	1 cut(s)	450
VpaK11BI	GGWCC	3 cut(s)	413, 917, 980
XapI	RAATTY	2 cut(s)	126, 294
XceI	RCATGY	1 cut(s)	728
XmaJI	CCTAGG	1 cut(s)	920
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.