Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001309

Physical Location & Seq

Genomic Coordinates Forward (+)

27209392 .. 27213924

Gene Structure 4533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1181300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCTTCCACGGAGGGTATAGTACCAATAACCAGGGCTTTTCTCGCTTCCTACTACGACACATACCAATTCCCCCCTCTCTCAAACGACGTCGCTCGCCTCTCAGCCGAGATTCGATCCCTCACCGCCGATTTGCTCCGCCACTCTCCGGCGGCTCAAGGCGAGGAGAGATTGTTAGTGAGTGAATTGGAGACTGAACCTCCCCATAAAGTCGACGAAAACATGTGGAAGAATCGAGAGCATATGGAAGAGATACTATTTTTGCTTGAAAAACCCCATTGGCCTCAAACTCTTCGAATGCAGTTCAGTCCTGATGATGCTGAACTAGCTACCGTGATTGATCGCCTCCACCAGAAATTTCAAACCAGTTTGAAGACATTGGAGACTTTCCAAGCGAAAAATTCCGAACGTGTGTTCAACACGGTTATGACTTACATTCCACAGGATTTTCGGGGAAGGCTCATCAGACTACAGCGGGAGCGTTCAGAGAGGAATAAGCAAGCAGAGGTTGAAGCTTTGGTTAGTTCTGGAGCAACTATACGTGAACGTTATGCTCTCTTGTGGAACCAACAAATGGAGAGGAGGAGACTGTTAGCGCAGCTTGGTTCTGCAACTGGTGTCTACAAGACGCTTGTCAAGTACTTGGTGGGGGTTCCACAGGTTTTACTTGATTTTATTCGCCAGATAAATGATGATGATGGGCCCATGGAAGAGCAAAGACAACGTTATGGACCACCCTTATACAGCCTTACAACTATGGCCCTTCTTATACGACTCTTTATTTCGTTGTCTTGGGGGCGATTTGAGACTAGAAAATTAAGCAAGCAAGAGTTAGCAGTCTTGGAAGAAGTTGTTGATGTCTACACCACTGAATTTGTAAGGTTTATTACGTTCATCAGTGAGGTCTTTGCAAATTCCCCCTTTTTTATCCCAGCAGAGGTTGCGGGCGCATTACAAGGAAGGAATAACGATGATTACCAAGAGACCAGTGTTCCAGCTGGGAAAATTCATGAGGTTTCATTGGCTGTGGACGCAATAAATTCATATATTGCTTGGGATTTCTCGCTTGTACAAGGGAAGATAAACTTGGATATTGGATTTAGTGTTGAGTATACAAATCCTTCTGGGCAAAAATCTCTCATTTTACCTTACCGACGTTTCGAGTCTGACCAAGGGAACTTCTGCACATGCGAGGCGGGAAACTACAAACTGATTTGGGACAATTCCTATTCAAGTTTTTTTAAGAAGGTGCTGCGCTACAAGGTAGATTGCATACCGCCAGTCACAGAGCCGGTTGAACCTGCGACTGAAGTTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

441

Amino Acids

50.62

Weight (kDa)

5.25

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01010 AT5G01010 AT5G01010 AT5G01010 AT5G01010
fragaria_vesca	FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090
malus_domestica	MD04G1181300.v1.1 MD12G1196200.v1.1
prunus_persica	Prupe.6G300700_v2.0.a1
pyrus_communis	pycom04g16010 pycom12g18240
rosa_chinensis	RchiOBHm_Chr1g0381551 RchiOBHm_Chr2g0142661 RchiOBHm_Chr3g0459311 RchiOBHm_Chr3g0481991 RchiOBHm_Chr3g0494831 RchiOBHm_Chr4g0423451
rosa_laevigata	RLG00000002838 RLG00000008948 RLG00000025092 RLG00000035380
rosa_multiflora	Rmu_sc0016591.1_g000001 Rmu_sc0031252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024690 Rroxscaffold_4G00328920 Rroxscaffold_6G00420280 Rroxscaffold_7G00187060
rosa_rugosa	Rorug03G0035200 Rorug03G0035300 Rorug03G0185700 Rorug03G0335300 Rorug04G0044400 Rorug04G0065300
rosa_samantha	Rh2BG436600 Rh3AG093200 Rh3AG317300 Rh3BG096200 Rh3CG097400 Rh3DG096800 Rh5AG160100 Rh5AG165100 Rh6BG240800
rosa_wichuraiana	Rw2G034970 Rw2G047080 Rw3G008020 Rw5G032380 Rw5G032430 Rw6G015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	1309
AccB7I	CCANNNNNTGG	1 cut(s)	574
AccI	GTMKAC	4 cut(s)	213, 621, 861, 1112
AciI	CCGC	7 cut(s)	126, 139, 152, 475, 944, 1196, 1277
AclI	AACGTT	2 cut(s)	547, 724
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	6 cut(s)	356, 400, 872, 913, 1005, 1039
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	3 cut(s)	24, 641, 1071
AfiI	CCNNNNNNNGG	3 cut(s)	148, 574, 937
AflIII	ACRYGT	2 cut(s)	222, 409
AgsI	TTSAA	8 cut(s)	269, 362, 373, 418, 512, 1233, 1298, 1316
AjnI	CCWGG	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	1070, 1102
AluBI	AGCT	4 cut(s)	329, 515, 601, 998
AluI	AGCT	4 cut(s)	329, 515, 601, 998
Alw26I	GTCTC	5 cut(s)	185, 377, 580, 800, 977
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	3 cut(s)	281, 701, 759
ApaI	GGGCCC	1 cut(s)	705
ApeKI	GCWGC	2 cut(s)	598, 1252
ApoI	RAATTY	6 cut(s)	356, 400, 872, 913, 1005, 1039
AspLEI	GCGC	3 cut(s)	598, 950, 1257
AspS9I	GGNCC	4 cut(s)	701, 702, 731, 760
AsuHPI	GGTGA	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	731
BaeGI	GKGCMC	1 cut(s)	705
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	610, 1239
BccI	CCATC	1 cut(s)	692
BciT130I	CCWGG	1 cut(s)	34
BcoDI	GTCTC	5 cut(s)	185, 377, 580, 800, 977
BfaI	CTAG	2 cut(s)	326, 810
BfmI	CTRYAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	1309
BisI	GCNGC	3 cut(s)	153, 599, 1253
BlsI	GCNGC	3 cut(s)	154, 600, 1254
BmcAI	AGTACT	1 cut(s)	641
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	731
BmgT120I	GGNCC	4 cut(s)	701, 702, 731, 760
BmiI	GGNNCC	3 cut(s)	566, 654, 703
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	307
BoxI	GACNNNNGTC	1 cut(s)	632
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	549
Bpu14I	TTCGAA	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	977
BsaJI	CCNNGG	4 cut(s)	9, 33, 705, 1171
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 184, 188, 214
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 574, 937
Bse118I	RCCGGY	1 cut(s)	1291
Bse1I	ACTGG	4 cut(s)	366, 619, 987, 1280
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	4 cut(s)	9, 33, 705, 1171
BseLI	CCNNNNNNNGG	3 cut(s)	148, 574, 937
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	4 cut(s)	366, 619, 987, 1280
BseRI	GAGGAG	3 cut(s)	179, 595, 598
BseSI	GKGCMC	1 cut(s)	705
BseXI	GCAGC	2 cut(s)	610, 1239
BseYI	CCCAGC	2 cut(s)	931, 998
BsgI	GTGCAG	1 cut(s)	1168
BshFI	GGCC	3 cut(s)	283, 703, 761
BsiSI	CCGG	2 cut(s)	149, 1292
BslFI	GGGAC	1 cut(s)	1232
BslI	CCNNNNNNNGG	3 cut(s)	148, 574, 937
BsmAI	GTCTC	5 cut(s)	185, 377, 580, 800, 977
BsmFI	GGGAC	1 cut(s)	1232
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	3 cut(s)	283, 703, 761
Bso31I	GGTCTC	1 cut(s)	977
Bsp119I	TTCGAA	1 cut(s)	295
Bsp120I	GGGCCC	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp1407I	TGTACA	1 cut(s)	1069
Bsp143I	GATC	2 cut(s)	116, 340
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	7 cut(s)	126, 139, 152, 475, 944, 1196, 1277
BspANI	GGCC	3 cut(s)	283, 703, 761
BspCNI	CTCAG	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	3 cut(s)	566, 654, 703
BspMI	ACCTGC	1 cut(s)	1309
BspPI	GGATC	1 cut(s)	111
BspQI	GCTCTTC	1 cut(s)	705
BspT104I	TTCGAA	1 cut(s)	295
BspTNI	GGTCTC	1 cut(s)	977
BsrFI	RCCGGY	1 cut(s)	1291
BsrGI	TGTACA	1 cut(s)	1069
BsrI	ACTGG	4 cut(s)	366, 619, 987, 1280
BssAI	RCCGGY	1 cut(s)	1291
BssECI	CCNNGG	4 cut(s)	9, 33, 705, 1171
BssMI	GATC	2 cut(s)	116, 340
BssNAI	GTATAC	1 cut(s)	1113
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	705, 1171
Bst1107I	GTATAC	1 cut(s)	1113
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	3 cut(s)	334, 424, 591
Bst6I	CTCTTC	3 cut(s)	243, 297, 705
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstAUI	TGTACA	1 cut(s)	1069
BstBAI	YACGTR	1 cut(s)	542
BstBI	TTCGAA	1 cut(s)	295
BstC8I	GCNNGC	4 cut(s)	97, 501, 824, 946
BstDEI	CTNAG	1 cut(s)	103
BstDSI	CCRYGG	2 cut(s)	9, 705
BstHHI	GCGC	3 cut(s)	598, 950, 1257
BstKTI	GATC	2 cut(s)	119, 343
BstMAI	GTCTC	5 cut(s)	185, 377, 580, 800, 977
BstMBI	GATC	2 cut(s)	116, 340
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 326, 941, 1031
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	2 cut(s)	226, 1191
BstPAI	GACNNNNGTC	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	470
BstSLI	GKGCMC	1 cut(s)	705
BstV1I	GCAGC	2 cut(s)	610, 1239
BstV2I	GAAGAC	1 cut(s)	380
BstZ17I	GTATAC	1 cut(s)	1113
BsuRI	GGCC	3 cut(s)	283, 703, 761
BtgI	CCRYGG	2 cut(s)	9, 705
BtsIMutI	CAGTG	3 cut(s)	867, 904, 994
BveI	ACCTGC	1 cut(s)	1309
Cac8I	GCNNGC	4 cut(s)	97, 501, 824, 946
CciI	TCATGA	1 cut(s)	1009
CfoI	GCGC	3 cut(s)	598, 950, 1257
Cfr10I	RCCGGY	1 cut(s)	1291
Cfr13I	GGNCC	4 cut(s)	701, 702, 731, 760
CseI	GACGC	2 cut(s)	637, 1040
Csp6I	GTAC	3 cut(s)	23, 640, 1070
CspCI	CAANNNNNGTGG	2 cut(s)	856, 891
CviAII	CATG	4 cut(s)	223, 706, 1010, 1188
CviQI	GTAC	3 cut(s)	23, 640, 1070
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	2 cut(s)	118, 342
DpnII	GATC	2 cut(s)	116, 340
Eam1104I	CTCTTC	3 cut(s)	243, 297, 705
EarI	CTCTTC	3 cut(s)	243, 297, 705
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	2 cut(s)	705, 1171
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	1 cut(s)	977
Eco47I	GGWCC	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	2 cut(s)	705, 1171
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	2 cut(s)	705, 1171
FaeI	CATG	4 cut(s)	226, 709, 1013, 1191
FalI	AAGNNNNNCTT	2 cut(s)	1070, 1102
FaqI	GGGAC	1 cut(s)	1232
FatI	CATG	4 cut(s)	222, 705, 1009, 1187
FauI	CCCGC	3 cut(s)	468, 937, 1189
FauNDI	CATATG	1 cut(s)	243
FblI	GTMKAC	4 cut(s)	213, 621, 861, 1112
Fnu4HI	GCNGC	3 cut(s)	153, 599, 1253
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	3 cut(s)	153, 599, 1253
FspBI	CTAG	2 cut(s)	326, 810
GlaI	GCGC	3 cut(s)	597, 949, 1256
GluI	GCNGC	3 cut(s)	153, 599, 1253
GsaI	CCCAGC	2 cut(s)	935, 1002
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	3 cut(s)	283, 703, 761
HapII	CCGG	2 cut(s)	149, 1292
HgaI	GACGC	2 cut(s)	637, 1040
HhaI	GCGC	3 cut(s)	598, 950, 1257
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	226, 709, 1013, 1191
Hin6I	GCGC	3 cut(s)	596, 948, 1255
HinP1I	GCGC	3 cut(s)	596, 948, 1255
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	4 cut(s)	112, 232, 774, 1163
HpaII	CCGG	2 cut(s)	149, 1292
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	6 cut(s)	214, 545, 622, 862, 1030, 1113
Hpy188I	TCNGA	4 cut(s)	406, 467, 487, 1168
Hpy188III	TCNNGA	4 cut(s)	236, 311, 528, 1010
Hpy8I	GTNNAC	6 cut(s)	214, 545, 622, 862, 1030, 1113
Hpy99I	CGWCG	4 cut(s)	92, 95, 218, 1158
HpyAV	CCTTC	5 cut(s)	450, 773, 954, 1131, 1240
HpyCH4III	ACNGT	3 cut(s)	334, 424, 591
HpyCH4IV	ACGT	7 cut(s)	90, 409, 541, 547, 724, 890, 1156
HpyCH4V	TGCA	5 cut(s)	301, 611, 911, 1185, 1272
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 326, 941, 1031
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	7 cut(s)	90, 409, 541, 547, 724, 890, 1156
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	226, 709, 1013, 1191
HspAI	GCGC	3 cut(s)	596, 948, 1255
Kzo9I	GATC	2 cut(s)	116, 340
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	3 cut(s)	141, 478, 530
Lsp1109I	GCAGC	2 cut(s)	610, 1239
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	326, 810
MaeII	ACGT	7 cut(s)	90, 409, 541, 547, 724, 890, 1156
MaeIII	GTNAC	1 cut(s)	1282
MalI	GATC	2 cut(s)	118, 342
MboI	GATC	2 cut(s)	116, 340
MboII	GAAGA	7 cut(s)	241, 260, 284, 385, 722, 857, 1090
MhlI	GDGCHC	1 cut(s)	705
MlyI	GAGTC	2 cut(s)	768, 1172
MseI	TTAA	2 cut(s)	818, 1242
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	2 cut(s)	475, 998
MspI	CCGG	2 cut(s)	149, 1292
MspR9I	CCNGG	1 cut(s)	34
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	4 cut(s)	44, 326, 941, 1031
NcoI	CCATGG	1 cut(s)	705
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	2 cut(s)	116, 340
NlaIII	CATG	4 cut(s)	226, 709, 1013, 1191
NlaIV	GGNNCC	3 cut(s)	566, 654, 703
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	1282
NspI	RCATGY	2 cut(s)	226, 1191
NspV	TTCGAA	1 cut(s)	295
PagI	TCATGA	1 cut(s)	1009
PciI	ACATGT	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	705
PctI	GAATGC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	112, 232
PflMI	CCANNNNNTGG	1 cut(s)	574
PkrI	GCNGC	3 cut(s)	154, 600, 1254
PleI	GAGTC	2 cut(s)	768, 1171
PpsI	GAGTC	2 cut(s)	768, 1171
Ppu21I	YACGTR	1 cut(s)	542
PscI	ACATGT	1 cut(s)	222
PshAI	GACNNNNGTC	1 cut(s)	632
Psp1406I	AACGTT	2 cut(s)	547, 724
Psp6I	CCWGG	1 cut(s)	32
PspFI	CCCAGC	2 cut(s)	931, 998
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	3 cut(s)	566, 654, 703
PspOMI	GGGCCC	1 cut(s)	701
PspPI	GGNCC	4 cut(s)	701, 702, 731, 760
PvuII	CAGCTG	1 cut(s)	998
RsaI	GTAC	3 cut(s)	24, 641, 1071
RsaNI	GTAC	3 cut(s)	23, 640, 1070
RseI	CAYNNNNRTG	1 cut(s)	425
SalI	GTCGAC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	2 cut(s)	818, 1242
SatI	GCNGC	3 cut(s)	153, 599, 1253
Sau3AI	GATC	2 cut(s)	116, 340
Sau96I	GGNCC	4 cut(s)	701, 702, 731, 760
ScaI	AGTACT	1 cut(s)	641
SchI	GAGTC	2 cut(s)	768, 1172
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	705
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	470
SfuI	TTCGAA	1 cut(s)	295
SinI	GGWCC	1 cut(s)	731
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SsiI	CCGC	7 cut(s)	126, 139, 152, 475, 944, 1196, 1277
SspMI	CTAG	2 cut(s)	326, 810
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	2 cut(s)	705, 1171
TaaI	ACNGT	3 cut(s)	334, 424, 591
TaiI	ACGT	7 cut(s)	93, 412, 544, 550, 727, 893, 1159
TaqI	TCGA	5 cut(s)	115, 213, 235, 295, 1161
TatI	WGTACW	2 cut(s)	639, 1069
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	112, 232
Tru1I	TTAA	2 cut(s)	818, 1242
Tru9I	TTAA	2 cut(s)	818, 1242
TscAI	CASTG	3 cut(s)	874, 904, 994
TseFI	GTSAC	1 cut(s)	1282
TseI	GCWGC	2 cut(s)	598, 1252
Tsp45I	GTSAC	1 cut(s)	1282
TspDTI	ATGAA	4 cut(s)	883, 998, 1008, 1032
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	3 cut(s)	874, 904, 994
Van91I	CCANNNNNTGG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	731
XapI	RAATTY	6 cut(s)	356, 400, 872, 913, 1005, 1039
XceI	RCATGY	2 cut(s)	226, 1191
XmiI	GTMKAC	4 cut(s)	213, 621, 861, 1112
XspI	CTAG	2 cut(s)	326, 810
ZraI	GACGTC	1 cut(s)	91
ZrmI	AGTACT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.