Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001309

Physical Location & Seq

Genomic Coordinates Forward (+)

43474259 .. 43505666

Gene Structure 31408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG317300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTTCTTCCACGGAGAGTCTGGTGCCCATGACCAGGGCTTTTCTCACTTCTTATTATGACACCTACAAATTCCTTCCTCTCTCCGATGACATCCCCCGCCTCTCCTCTGAGATTCGATCCCTTACCGCCGATTTGCTCTCCAACTCTTCGGCCACTCCAGGAGAAGAGAGATTAGTAGTGGATGAACTAGAGAGTCCTCCGCCGCATAAAGTGGATGAGAGTATGTGGAAGAATCGGGAGCATATGGAAGAGGTAGTCCTTTTACTTGATAGGCCTCATTGGCCTCAATCGATCCCTCCTCCTCCAAATCTTCCTCGTCCTTCGTCTCCTTCAAACCTTCACGGTAGCCCTCACAAAATTAACAACTGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

14.07

Weight (kDa)

5.25

Isoelectric Point (pI)

66.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01010 AT5G01010 AT5G01010 AT5G01010 AT5G01010
fragaria_vesca	FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090
malus_domestica	MD04G1181300.v1.1 MD12G1196200.v1.1
prunus_persica	Prupe.6G300700_v2.0.a1
pyrus_communis	pycom04g16010 pycom12g18240
rosa_chinensis	RchiOBHm_Chr1g0381551 RchiOBHm_Chr2g0142661 RchiOBHm_Chr3g0459311 RchiOBHm_Chr3g0481991 RchiOBHm_Chr3g0494831 RchiOBHm_Chr4g0423451
rosa_laevigata	RLG00000002838 RLG00000008948 RLG00000025092 RLG00000035380
rosa_multiflora	Rmu_sc0016591.1_g000001 Rmu_sc0031252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024690 Rroxscaffold_4G00328920 Rroxscaffold_6G00420280 Rroxscaffold_7G00187060
rosa_rugosa	Rorug03G0035200 Rorug03G0035300 Rorug03G0185700 Rorug03G0335300 Rorug04G0044400 Rorug04G0065300
rosa_samantha	Rh2BG436600 Rh3AG093200 Rh3AG317300 Rh3BG096200 Rh3CG097400 Rh3DG096800 Rh5AG160100 Rh5AG165100 Rh6BG240800
rosa_wichuraiana	Rw2G034970 Rw2G047080 Rw3G008020 Rw5G032380 Rw5G032430 Rw6G015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AciI	CCGC	4 cut(s)	100, 129, 203, 206
AclWI	GGATC	2 cut(s)	114, 289
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	336
AjnI	CCWGG	2 cut(s)	35, 160
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	2 cut(s)	114, 289
AoxI	GGCC	3 cut(s)	153, 275, 284
ApoI	RAATTY	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	37, 162
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	191
BglI	GCCNNNNNGGC	1 cut(s)	283
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	2 cut(s)	37, 162
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	37, 162
BpmI	CTGGAG	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	12, 36
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	37, 162
BseCI	ATCGAT	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	12, 36
BseGI	GGATG	3 cut(s)	93, 190, 223
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	3 cut(s)	97, 291, 294
BseSI	GKGCMC	1 cut(s)	30
BshFI	GGCC	3 cut(s)	155, 277, 286
BshNI	GGYRCC	1 cut(s)	25
BshVI	ATCGAT	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	333
BsmBI	CGTCTC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	155, 277, 286
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	119, 294
BspACI	CCGC	4 cut(s)	100, 129, 203, 206
BspANI	GGCC	3 cut(s)	155, 277, 286
BspCNI	CTCAG	1 cut(s)	103
BspDI	ATCGAT	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	114, 289
BspT107I	GGYRCC	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	12, 36
BssMI	GATC	2 cut(s)	119, 294
Bst2UI	CCWGG	2 cut(s)	37, 162
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	3 cut(s)	154, 162, 246
BstDEI	CTNAG	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	93, 190, 223
BstKTI	GATC	2 cut(s)	122, 297
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	2 cut(s)	119, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNI	CCWGG	2 cut(s)	37, 162
BstSCI	CCNGG	2 cut(s)	35, 160
BstSLI	GKGCMC	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	293
BsuRI	GGCC	3 cut(s)	155, 277, 286
BsuTUI	ATCGAT	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	93, 190, 223
ClaI	ATCGAT	1 cut(s)	293
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	6 cut(s)	5, 41, 155, 277, 286, 351
CviKI_1	RGCY	6 cut(s)	5, 41, 155, 277, 286, 351
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	121, 296
DpnII	GATC	2 cut(s)	119, 294
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	3 cut(s)	154, 162, 246
EarI	CTCTTC	3 cut(s)	154, 162, 246
EciI	GGCGGA	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	35, 160
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	1 cut(s)	34
FaiI	YATR	7 cut(s)	32, 60, 210, 227, 246, 248, 376
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	3 cut(s)	80, 197, 230
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	155, 277, 286
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	4 cut(s)	19, 115, 196, 235
Hpy188I	TCNGA	2 cut(s)	88, 112
Hpy188III	TCNNGA	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	86, 333, 342, 350
HpyCH4III	ACNGT	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	119, 294
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	5 cut(s)	8, 22, 49, 147, 174
MaeI	CTAG	1 cut(s)	191
MalI	GATC	2 cut(s)	121, 296
MboI	GATC	2 cut(s)	119, 294
MboII	GAAGA	5 cut(s)	141, 179, 244, 263, 305
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	71, 360
MlyI	GAGTC	2 cut(s)	28, 205
MmeI	TCCRAC	1 cut(s)	168
MseI	TTAA	1 cut(s)	363
MspR9I	CCNGG	2 cut(s)	37, 162
MvaI	CCWGG	2 cut(s)	37, 162
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeI	CATATG	1 cut(s)	246
NdeII	GATC	2 cut(s)	119, 294
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	115, 235
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	2 cut(s)	27, 204
PpsI	GAGTC	2 cut(s)	27, 204
Psp6I	CCWGG	2 cut(s)	35, 160
PspGI	CCWGG	2 cut(s)	35, 160
PspN4I	GGNNCC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	119, 294
SchI	GAGTC	2 cut(s)	28, 205
ScrFI	CCNGG	2 cut(s)	37, 162
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	3 cut(s)	68, 258, 342
SfiI	GGCCNNNNNGGCC	1 cut(s)	283
Sse9I	AATT	2 cut(s)	71, 360
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	4 cut(s)	100, 129, 203, 206
SspMI	CTAG	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	35, 160
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	2 cut(s)	118, 293
TasI	AATT	2 cut(s)	71, 360
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	115, 235
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	1 cut(s)	29
XapI	RAATTY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.