Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001309

Physical Location & Seq

Genomic Coordinates Forward (+)

54688356 .. 54697846

Gene Structure 9491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAAAATTGCTTCATACAACATGTTTAAGGAGCTTCCGTTGTGCGAAGATGTTACAATTCAGAATTTTTTAGATAGAAAAACATTGTACAACACTTATAAGGATGATTCATTGTTAATTTTGATTGCGGAAATCAGCTATTGGGCTAAAAGAAATTTCATTCCCTCTCGATCGAGTCCTGAGGATGCTCAGCTTGCTACTTTTTTCACTTGCCTGCATCATAAGTTCAATACGACCTTGAAGTCATTGGAATCGTTTCAAGCTAAGAACTCTGAGCGTGTGTTCAATACAGTTATGACTTACATTCCTCAAGATTTTCGATGGAGGCTTATTAGACTGCAGAGGGAGCGATCCGAGAGGAATGGGATTGTTCATGGCCCTTCCAGGAGGAGACTATTGGCACAGCTTGGTTCTGCTACTTGTGTCTACAAAACCCTTGTCAAGTACTTGGTTGGGGTTCCACAGGTTTTACTAGATTTTGTTCGCCAAATAAATGATGATGATGGGCCCATGGAAGAGCAACGACAGCATTATGGACCACCTTTGTACCGCCTTACAACTTTGGTGCTTCTTATACGTCTGGCTATTTTGCTGTCTCGGGGGCGGTTTGAAACTAGAAAATTAAACAAGCAAGAGTTAGCTGTCTTGGAACAATCTGTTGATGTCTACACCACTGAGTTTGAAAGGTTTATTAGGTTTATCAAGAATAATGATGATTACAAAGAGACAACTGTTCCTGACGGTAAAACACATGAGGTTTCTCTGTCTGTGGACTTGATAAATTCGTATATTGCTTGGGATTTTTCGCTTGTGCAAGGGAAGATAAACTTGGTATCAATGGTTAACTCTATATACTTTTTTGTTTCATACATAAATGATCACTATATCAATTCGAAGTTAAACCTCACGGCATTTGCTTGCTTCCTCCACATAATTTCCTCCAATGATTTCTTGCCACATAAGCCCTATGAGGTGTCTTGTTTTGGCAAGCTTTCCTCTCTGGACAGGGTTTCCTGGTTGGACCAGGAAAACTTCTTTTCTTCTTTTTTTTTGCTCATTTCTCTATCACACAACAATGATAACACATACCTGTTGTTTGTGTGTTTCTCACACAACTGTGTTCCACCGGCTCACTCTACAATGGTGGGTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

384

Amino Acids

44.74

Weight (kDa)

8.08

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01010 AT5G01010 AT5G01010 AT5G01010 AT5G01010
fragaria_vesca	FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090 FvH4_6g09090
malus_domestica	MD04G1181300.v1.1 MD12G1196200.v1.1
prunus_persica	Prupe.6G300700_v2.0.a1
pyrus_communis	pycom04g16010 pycom12g18240
rosa_chinensis	RchiOBHm_Chr1g0381551 RchiOBHm_Chr2g0142661 RchiOBHm_Chr3g0459311 RchiOBHm_Chr3g0481991 RchiOBHm_Chr3g0494831 RchiOBHm_Chr4g0423451
rosa_laevigata	RLG00000002838 RLG00000008948 RLG00000025092 RLG00000035380
rosa_multiflora	Rmu_sc0016591.1_g000001 Rmu_sc0031252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024690 Rroxscaffold_4G00328920 Rroxscaffold_6G00420280 Rroxscaffold_7G00187060
rosa_rugosa	Rorug03G0035200 Rorug03G0035300 Rorug03G0185700 Rorug03G0335300 Rorug04G0044400 Rorug04G0065300
rosa_samantha	Rh2BG436600 Rh3AG093200 Rh3AG317300 Rh3BG096200 Rh3CG097400 Rh3DG096800 Rh5AG160100 Rh5AG165100 Rh6BG240800
rosa_wichuraiana	Rw2G034970 Rw2G047080 Rw3G008020 Rw5G032380 Rw5G032430 Rw6G015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	99
AasI	GACNNNNNNGTC	1 cut(s)	241
AccI	GTMKAC	2 cut(s)	426, 666
AciI	CCGC	3 cut(s)	128, 550, 604
AclWI	GGATC	1 cut(s)	345
AcsI	RAATTY	3 cut(s)	64, 154, 781
AfaI	GTAC	3 cut(s)	89, 446, 548
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	6 cut(s)	229, 241, 260, 286, 611, 683
AjnI	CCWGG	3 cut(s)	383, 1013, 1023
AjuI	GAANNNNNNNTTGG	2 cut(s)	812, 844
AleI	CACNNNNGTG	1 cut(s)	1116
AluBI	AGCT	7 cut(s)	34, 138, 193, 263, 406, 641, 991
AluI	AGCT	7 cut(s)	34, 138, 193, 263, 406, 641, 991
Alw26I	GTCTC	3 cut(s)	385, 600, 719
AlwI	GGATC	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	597
AoxI	GGCC	2 cut(s)	376, 506
ApaI	GGGCCC	1 cut(s)	510
ApoI	RAATTY	3 cut(s)	64, 154, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	423, 455
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	5 cut(s)	377, 506, 507, 536, 1021
AsuII	TTCGAA	1 cut(s)	893
AvaI	CYCGRG	1 cut(s)	597
AvaII	GGWCC	2 cut(s)	536, 1021
AxyI	CCTNAGG	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	510
BaeI	ACNNNNGTAYC	2 cut(s)	530, 563
BanII	GRGCYC	1 cut(s)	510
BccI	CCATC	2 cut(s)	315, 497
BceAI	ACGGC	1 cut(s)	924
BciT130I	CCWGG	3 cut(s)	385, 1015, 1025
BclI	TGATCA	1 cut(s)	877
BcoDI	GTCTC	3 cut(s)	385, 600, 719
BfaI	CTAG	2 cut(s)	473, 615
BfmI	CTRYAG	1 cut(s)	338
BlpI	GCTNAGC	1 cut(s)	189
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	3 cut(s)	385, 1015, 1025
Bme18I	GGWCC	2 cut(s)	536, 1021
BmeT110I	CYCGRG	1 cut(s)	597
BmgT120I	GGNCC	5 cut(s)	377, 506, 507, 536, 1021
BmiI	GGNNCC	2 cut(s)	459, 508
BmrFI	CCNGG	3 cut(s)	385, 1015, 1025
BmsI	GCATC	2 cut(s)	175, 226
Bpu1102I	GCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	893
BpuEI	CTTGAG	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	510
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bse118I	RCCGGY	1 cut(s)	1126
Bse21I	CCTNAGG	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	385, 1015, 1025
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	109, 190
BseMII	CTCAG	4 cut(s)	171, 203, 264, 666
BseRI	GAGGAG	1 cut(s)	403
BseSI	GKGCMC	1 cut(s)	510
Bsh1285I	CGRYCG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	378, 508
BsiEI	CGRYCG	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	1 cut(s)	1127
BsmAI	GTCTC	3 cut(s)	385, 600, 719
BsnI	GGCC	2 cut(s)	378, 508
BsoBI	CYCGRG	1 cut(s)	597
Bsp119I	TTCGAA	1 cut(s)	893
Bsp120I	GGGCCC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	170, 350, 877
Bsp1720I	GCTNAGC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	3 cut(s)	128, 550, 604
BspANI	GGCC	2 cut(s)	378, 508
BspCNI	CTCAG	4 cut(s)	172, 202, 265, 667
BspLI	GGNNCC	2 cut(s)	459, 508
BspMAI	CTGCAG	1 cut(s)	342
BspPI	GGATC	1 cut(s)	345
BspQI	GCTCTTC	1 cut(s)	510
BspT104I	TTCGAA	1 cut(s)	893
BsrFI	RCCGGY	1 cut(s)	1126
BsrGI	TGTACA	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	1126
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	3 cut(s)	170, 350, 877
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	3 cut(s)	385, 1015, 1025
Bst4CI	ACNGT	4 cut(s)	292, 733, 743, 1118
Bst6I	CTCTTC	1 cut(s)	510
BstAUI	TGTACA	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	893
BstC8I	GCNNGC	4 cut(s)	195, 215, 919, 989
BstDEI	CTNAG	5 cut(s)	180, 189, 264, 273, 675
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	2 cut(s)	109, 190
BstKTI	GATC	3 cut(s)	173, 353, 880
BstMAI	GTCTC	3 cut(s)	385, 600, 719
BstMBI	GATC	3 cut(s)	170, 350, 877
BstMCI	CGRYCG	1 cut(s)	173
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 346, 526, 961
BstNI	CCWGG	3 cut(s)	385, 1015, 1025
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	383, 1013, 1023
BstSFI	CTRYAG	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	510
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	378, 508
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	109, 190
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	4 cut(s)	195, 215, 919, 989
Cfr10I	RCCGGY	1 cut(s)	1126
Cfr13I	GGNCC	5 cut(s)	377, 506, 507, 536, 1021
Csp6I	GTAC	3 cut(s)	88, 445, 547
CspCI	CAANNNNNGTGG	2 cut(s)	661, 696
CviAII	CATG	4 cut(s)	22, 374, 511, 752
CviQI	GTAC	3 cut(s)	88, 445, 547
DdeI	CTNAG	5 cut(s)	180, 189, 264, 273, 675
DpnI	GATC	3 cut(s)	172, 352, 879
DpnII	GATC	3 cut(s)	170, 350, 877
DrdI	GACNNNNNNGTC	1 cut(s)	241
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	510
Eco47I	GGWCC	2 cut(s)	536, 1021
Eco81I	CCTNAGG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	597
EcoRII	CCWGG	3 cut(s)	383, 1013, 1023
EcoT14I	CCWWGG	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	4 cut(s)	25, 377, 514, 755
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FatI	CATG	4 cut(s)	21, 373, 510, 751
FbaI	TGATCA	1 cut(s)	877
FblI	GTMKAC	2 cut(s)	426, 666
FokI	GGATG	2 cut(s)	116, 197
FriOI	GRGCYC	1 cut(s)	510
FspBI	CTAG	2 cut(s)	473, 615
HaeIII	GGCC	2 cut(s)	378, 508
HapII	CCGG	1 cut(s)	1127
Hin1II	CATG	4 cut(s)	25, 377, 514, 755
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HindIII	AAGCTT	1 cut(s)	989
HinfI	GANTC	3 cut(s)	107, 175, 251
HpaI	GTTAAC	1 cut(s)	844
HpaII	CCGG	1 cut(s)	1127
Hpy166II	GTNNAC	4 cut(s)	427, 667, 772, 844
Hpy188I	TCNGA	3 cut(s)	63, 274, 355
Hpy188III	TCNNGA	6 cut(s)	168, 179, 311, 703, 737, 1001
Hpy8I	GTNNAC	4 cut(s)	427, 667, 772, 844
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	4 cut(s)	292, 733, 743, 1118
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	3 cut(s)	217, 340, 814
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 346, 526, 961
HpyF3I	CTNAG	5 cut(s)	180, 189, 264, 273, 675
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	4 cut(s)	25, 377, 514, 755
Ksp22I	TGATCA	1 cut(s)	877
KspAI	GTTAAC	1 cut(s)	844
Kzo9I	GATC	3 cut(s)	170, 350, 877
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	2 cut(s)	31, 346
LweI	GCATC	2 cut(s)	175, 226
MaeI	CTAG	2 cut(s)	473, 615
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	172, 352, 879
MboI	GATC	3 cut(s)	170, 350, 877
MboII	GAAGA	4 cut(s)	59, 527, 832, 1032
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	9 cut(s)	6, 57, 64, 117, 154, 620, 781, 889, 933
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	999
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	5 cut(s)	27, 116, 623, 843, 899
MslI	CAYNNNNRTG	2 cut(s)	1074, 1116
MspI	CCGG	1 cut(s)	1127
MspR9I	CCNGG	3 cut(s)	385, 1015, 1025
MvaI	CCWGG	3 cut(s)	385, 1015, 1025
MwoI	GCNNNNNNNGC	4 cut(s)	194, 346, 526, 961
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	3 cut(s)	170, 350, 877
NlaIII	CATG	4 cut(s)	25, 377, 514, 755
NlaIV	GGNNCC	2 cut(s)	459, 508
NspI	RCATGY	1 cut(s)	25
NspV	TTCGAA	1 cut(s)	893
OliI	CACNNNNGTG	1 cut(s)	1116
PciI	ACATGT	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	107, 251
PfoI	TCCNGGA	1 cut(s)	383
Ple19I	CGATCG	1 cut(s)	173
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PscI	ACATGT	1 cut(s)	21
PsiI	TTATAA	1 cut(s)	99
Psp6I	CCWGG	3 cut(s)	383, 1013, 1023
PspGI	CCWGG	3 cut(s)	383, 1013, 1023
PspN4I	GGNNCC	2 cut(s)	459, 508
PspOMI	GGGCCC	1 cut(s)	506
PspPI	GGNCC	5 cut(s)	377, 506, 507, 536, 1021
PstI	CTGCAG	1 cut(s)	342
PvuI	CGATCG	1 cut(s)	173
RsaI	GTAC	3 cut(s)	89, 446, 548
RsaNI	GTAC	3 cut(s)	88, 445, 547
RseI	CAYNNNNRTG	2 cut(s)	1074, 1116
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	5 cut(s)	27, 116, 623, 843, 899
Sau3AI	GATC	3 cut(s)	170, 350, 877
Sau96I	GGNCC	5 cut(s)	377, 506, 507, 536, 1021
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	3 cut(s)	385, 1015, 1025
SduI	GDGCHC	1 cut(s)	510
SfaNI	GCATC	2 cut(s)	175, 226
SfcI	CTRYAG	1 cut(s)	338
SfuI	TTCGAA	1 cut(s)	893
SinI	GGWCC	2 cut(s)	536, 1021
SmiMI	CAYNNNNRTG	2 cut(s)	1074, 1116
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	9 cut(s)	6, 57, 64, 117, 154, 620, 781, 889, 933
SsiI	CCGC	3 cut(s)	128, 550, 604
SspMI	CTAG	2 cut(s)	473, 615
StyD4I	CCNGG	3 cut(s)	383, 1013, 1023
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	4 cut(s)	292, 733, 743, 1118
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	4 cut(s)	169, 173, 319, 893
TasI	AATT	9 cut(s)	6, 57, 64, 117, 154, 620, 781, 889, 933
TatI	WGTACW	2 cut(s)	87, 444
TfiI	GAWTC	2 cut(s)	107, 251
Tru1I	TTAA	5 cut(s)	27, 116, 623, 843, 899
Tru9I	TTAA	5 cut(s)	27, 116, 623, 843, 899
TscAI	CASTG	1 cut(s)	679
TspDTI	ATGAA	5 cut(s)	17, 99, 148, 362, 855
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	679
VpaK11BI	GGWCC	2 cut(s)	536, 1021
XapI	RAATTY	3 cut(s)	64, 154, 781
XceI	RCATGY	1 cut(s)	25
XmiI	GTMKAC	2 cut(s)	426, 666
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	2 cut(s)	473, 615
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.